RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 RGPD8O14715 1765 aaPredicted RBP16.58■□□□□ 0.25
SHMT2-222ENST00000555774 F6X3S4 739 aa16.58■□□□□ 0.25
SHMT2-222ENST00000555774 SALL3Q9BXA9 1300 aa16.58■□□□□ 0.24
SHMT2-222ENST00000555774 SSFA2P28290 1259 aa16.57■□□□□ 0.24
SHMT2-222ENST00000555774 FOXD4L1Q9NU39 408 aa16.57■□□□□ 0.24
SHMT2-222ENST00000555774 IBTKQ9P2D0 1353 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-222ENST00000555774 FER1L4A9Z1Z3 1794 aa16.57■□□□□ 0.24
SHMT2-222ENST00000555774 ATP8B2P98198 1209 aa16.57■□□□□ 0.24
SHMT2-222ENST00000555774 LRRCC1Q9C099 1032 aa16.57■□□□□ 0.24
SHMT2-222ENST00000555774 APBB1O00213 710 aa16.56■□□□□ 0.24
SHMT2-222ENST00000555774 TAF7Q15545 349 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-222ENST00000555774 CACNA1FO60840 1977 aa16.56■□□□□ 0.24
SHMT2-222ENST00000555774 BAG4O95429 457 aaKnown RBP16.56■□□□□ 0.24
SHMT2-222ENST00000555774 CYP2E1P05181 493 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-222ENST00000555774 FKBP5Q13451 457 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-222ENST00000555774 SRCIN1Q9C0H9 1055 aa16.56■□□□□ 0.24
SHMT2-222ENST00000555774 AOX1Q06278 1338 aa16.55■□□□□ 0.24
SHMT2-222ENST00000555774 CHMP4AQ9BY43 222 aa16.55■□□□□ 0.24
SHMT2-222ENST00000555774 KLHL40Q2TBA0 621 aa16.54■□□□□ 0.24
SHMT2-222ENST00000555774 PLPPR3Q6T4P5 718 aa16.54■□□□□ 0.24
SHMT2-222ENST00000555774 PANK2Q9BZ23 570 aa16.54■□□□□ 0.24
SHMT2-222ENST00000555774 STAP2Q9UGK3 403 aa16.54■□□□□ 0.24
SHMT2-222ENST00000555774 EPB41L2O43491 1005 aaKnown RBP16.53■□□□□ 0.24
SHMT2-222ENST00000555774 MCM2P49736 904 aa16.53■□□□□ 0.24
SHMT2-222ENST00000555774 IL17REQ8NFR9 667 aa16.53■□□□□ 0.24
SHMT2-222ENST00000555774 MX1P20591 662 aa16.53■□□□□ 0.24
SHMT2-222ENST00000555774 TUBGCP6Q96RT7 1819 aa16.52■□□□□ 0.24
SHMT2-222ENST00000555774 MED1Q15648 1581 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-222ENST00000555774 MCCP23508 829 aa16.52■□□□□ 0.24
SHMT2-222ENST00000555774 ARXQ96QS3 562 aa16.52■□□□□ 0.24
SHMT2-222ENST00000555774 HOXB7P09629 217 aa16.52■□□□□ 0.23
SHMT2-222ENST00000555774 KCNA6P17658 529 aa16.52■□□□□ 0.23
SHMT2-222ENST00000555774 ANAPC15P60006 121 aa16.52■□□□□ 0.23
SHMT2-222ENST00000555774 ABTB2Q8N961 1025 aa16.52■□□□□ 0.23
SHMT2-222ENST00000555774 IL17RAQ96F46 866 aa16.52■□□□□ 0.23
SHMT2-222ENST00000555774 RRAGDQ9NQL2 400 aaPredicted RBP16.52■□□□□ 0.23
SHMT2-222ENST00000555774 EXOC6BQ9Y2D4 811 aa16.52■□□□□ 0.23
SHMT2-222ENST00000555774 CEMIPQ8WUJ3 1361 aa16.52■□□□□ 0.23
SHMT2-222ENST00000555774 ESYT1Q9BSJ8 1104 aa16.51■□□□□ 0.23
SHMT2-222ENST00000555774 PNMA6EA0A0J9YXQ4 647 aa16.5■□□□□ 0.23
SHMT2-222ENST00000555774 RAB11FIP3O75154 756 aa16.5■□□□□ 0.23
SHMT2-222ENST00000555774 ADGRL3Q9HAR2 1447 aa16.49■□□□□ 0.23
SHMT2-222ENST00000555774 UBTFL1P0CB47 393 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-222ENST00000555774 HDGFL1Q5TGJ6 251 aa16.49■□□□□ 0.23
SHMT2-222ENST00000555774 IP6K1Q92551 441 aa16.49■□□□□ 0.23
SHMT2-222ENST00000555774 LRRFIP2Q9Y608 721 aaKnown RBP16.49■□□□□ 0.23
SHMT2-222ENST00000555774 DDX49Q9Y6V7 483 aaKnown RBP16.49■□□□□ 0.23
SHMT2-222ENST00000555774 NFAT5O94916 1531 aa16.49■□□□□ 0.23
SHMT2-222ENST00000555774 GAS2L3Q86XJ1 694 aa16.48■□□□□ 0.23
SHMT2-222ENST00000555774 SSH3Q8TE77 659 aa16.48■□□□□ 0.23
SHMT2-222ENST00000555774 USP44Q9H0E7 712 aa16.48■□□□□ 0.23
SHMT2-222ENST00000555774 PHRF1Q9P1Y6 1649 aaKnown RBP16.48■□□□□ 0.23
SHMT2-222ENST00000555774 CLCN1P35523 988 aa16.48■□□□□ 0.23
SHMT2-222ENST00000555774 PHF8Q9UPP1 1060 aa16.48■□□□□ 0.23
SHMT2-222ENST00000555774 CHMLP26374 656 aa16.47■□□□□ 0.23
SHMT2-222ENST00000555774 ANO8Q9HCE9 1232 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-222ENST00000555774 ZNF445P59923 1031 aa16.47■□□□□ 0.23
SHMT2-222ENST00000555774 POLA2Q14181 598 aa16.46■□□□□ 0.23
SHMT2-222ENST00000555774 NUTM2GQ5VZR2 741 aa16.46■□□□□ 0.23
SHMT2-222ENST00000555774 LTN1O94822 1766 aa16.46■□□□□ 0.23
SHMT2-222ENST00000555774 MCTP1Q6DN14 999 aa16.46■□□□□ 0.23
SHMT2-222ENST00000555774 LMBRD1Q9NUN5 540 aa16.46■□□□□ 0.23
SHMT2-222ENST00000555774 KDM3BQ7LBC6 1761 aa16.45■□□□□ 0.22
SHMT2-222ENST00000555774 KCNH5Q8NCM2 988 aa16.45■□□□□ 0.22
SHMT2-222ENST00000555774 NECTIN2Q92692 538 aa16.45■□□□□ 0.22
SHMT2-222ENST00000555774 LTV1Q96GA3 475 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-222ENST00000555774 EIF4A1P60842 406 aaKnown RBP16.45■□□□□ 0.22
SHMT2-222ENST00000555774 CUL4AQ13619 759 aa16.45■□□□□ 0.22
SHMT2-222ENST00000555774 INTS4Q96HW7 963 aaKnown RBP16.45■□□□□ 0.22
SHMT2-222ENST00000555774 OVOS2A0A0G2JMS6 1433 aa16.44■□□□□ 0.22
SHMT2-222ENST00000555774 TRIM6-TRIM34B2RNG4 842 aa16.44■□□□□ 0.22
SHMT2-222ENST00000555774 NEK4P51957 841 aa16.44■□□□□ 0.22
SHMT2-222ENST00000555774 CCDC173Q0VFZ6 552 aa16.44■□□□□ 0.22
SHMT2-222ENST00000555774 ZGPATQ8N5A5 531 aaKnown RBP16.44■□□□□ 0.22
SHMT2-222ENST00000555774 LMO7Q8WWI1 1683 aa16.44■□□□□ 0.22
SHMT2-222ENST00000555774 NCAPD2Q15021 1401 aa16.44■□□□□ 0.22
SHMT2-222ENST00000555774 CHD2O14647 1828 aaKnown RBP16.44■□□□□ 0.22
SHMT2-222ENST00000555774 TMX3Q96JJ7 454 aa16.44■□□□□ 0.22
SHMT2-222ENST00000555774 HSP90AB4PQ58FF6 505 aa16.43■□□□□ 0.22
SHMT2-222ENST00000555774 RILPL2Q969X0 211 aa16.43■□□□□ 0.22
SHMT2-222ENST00000555774 TSHZ3Q63HK5 1081 aa16.42■□□□□ 0.22
SHMT2-222ENST00000555774 TRIM44Q96DX7 344 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-222ENST00000555774 ANO2Q9NQ90 1003 aa16.42■□□□□ 0.22
SHMT2-222ENST00000555774 ZDHHC9Q9Y397 364 aa16.42■□□□□ 0.22
SHMT2-222ENST00000555774 PKP1Q13835 747 aa16.42■□□□□ 0.22
SHMT2-222ENST00000555774 AKAP4Q5JQC9 854 aa16.42■□□□□ 0.22
SHMT2-222ENST00000555774 ANP32BQ92688 251 aaKnown RBP16.42■□□□□ 0.22
SHMT2-222ENST00000555774 KIF1BPQ96EK5 621 aa16.42■□□□□ 0.22
SHMT2-222ENST00000555774 PPP1R9BQ96SB3 815 aa16.42■□□□□ 0.22
SHMT2-222ENST00000555774 PHAXQ9H814 394 aaKnown RBP16.42■□□□□ 0.22
SHMT2-222ENST00000555774 NASPP49321 788 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-222ENST00000555774 PPP1R42Q7Z4L9 355 aa16.41■□□□□ 0.22
SHMT2-222ENST00000555774 C14orf37Q86TY3 774 aa16.41■□□□□ 0.22
SHMT2-222ENST00000555774 USHBP1Q8N6Y0 703 aa16.41■□□□□ 0.22
SHMT2-222ENST00000555774 AMOTQ4VCS5 1084 aa16.41■□□□□ 0.22
SHMT2-222ENST00000555774 NBPF6Q5VWK0 638 aa16.41■□□□□ 0.22
SHMT2-222ENST00000555774 DNAAF4Q8WXU2 420 aa16.41■□□□□ 0.22
SHMT2-222ENST00000555774 NBPF4Q96M43 638 aa16.41■□□□□ 0.22
SHMT2-222ENST00000555774 LMTK3Q96Q04 1460 aa16.41■□□□□ 0.22
SHMT2-222ENST00000555774 ESPNB1AK53 854 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms