RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PROCP04070 461 aa9.33□□□□□ -0.92
SCFD1-216ENST00000555550 NEUROD2Q15784 382 aa9.33□□□□□ -0.92
SCFD1-216ENST00000555550 KLRG1Q96E93 195 aa9.33□□□□□ -0.92
SCFD1-216ENST00000555550 CFHR5Q9BXR6 569 aa9.33□□□□□ -0.92
SCFD1-216ENST00000555550 LRRC4BQ9NT99 713 aa9.33□□□□□ -0.92
SCFD1-216ENST00000555550 ZNF330Q9Y3S2 320 aaPredicted RBP9.33□□□□□ -0.92
SCFD1-216ENST00000555550 CCDC85AQ96PX6 553 aaPredicted RBP9.32□□□□□ -0.92
SCFD1-216ENST00000555550 ZSCAN10Q96SZ4 725 aaPredicted RBP9.32□□□□□ -0.92
SCFD1-216ENST00000555550 CEP126Q9P2H0 1117 aa9.32□□□□□ -0.92
SCFD1-216ENST00000555550 MAP2K3P46734 347 aa9.31□□□□□ -0.92
SCFD1-216ENST00000555550 TSGA10IPQ3SY00 556 aa9.31□□□□□ -0.92
SCFD1-216ENST00000555550 MTMR14Q8NCE2 650 aa9.31□□□□□ -0.92
SCFD1-216ENST00000555550 RUBCNLQ9H714 662 aa9.31□□□□□ -0.92
SCFD1-216ENST00000555550 SNRKQ9NRH2 765 aa9.31□□□□□ -0.92
SCFD1-216ENST00000555550 KRBA1A5PL33 1030 aa9.3□□□□□ -0.92
SCFD1-216ENST00000555550 STAU1O95793 577 aaKnown RBP9.3□□□□□ -0.92
SCFD1-216ENST00000555550 TMEM214Q6NUQ4 689 aaKnown RBP9.3□□□□□ -0.92
SCFD1-216ENST00000555550 XAGE2Q96GT9 111 aa9.3□□□□□ -0.92
SCFD1-216ENST00000555550 RRAGCQ9HB90 399 aa9.3□□□□□ -0.92
SCFD1-216ENST00000555550 HRH3Q9Y5N1 445 aa9.3□□□□□ -0.92
SCFD1-216ENST00000555550 UBAP2LQ14157 1087 aaKnown RBP9.29□□□□□ -0.92
SCFD1-216ENST00000555550 C4orf17Q53FE4 359 aa9.29□□□□□ -0.92
SCFD1-216ENST00000555550 EDARADDQ8WWZ3 215 aa9.29□□□□□ -0.92
SCFD1-216ENST00000555550 ZNF592Q92610 1267 aa9.29□□□□□ -0.92
SCFD1-216ENST00000555550 A0A1B0GTH6 734 aa9.28□□□□□ -0.92
SCFD1-216ENST00000555550 C2CD2LO14523 706 aa9.28□□□□□ -0.92
SCFD1-216ENST00000555550 MYCP01106 439 aaPredicted RBP9.28□□□□□ -0.92
SCFD1-216ENST00000555550 XP32Q5T750 250 aa9.28□□□□□ -0.92
SCFD1-216ENST00000555550 BANK1Q8NDB2 785 aa9.28□□□□□ -0.92
SCFD1-216ENST00000555550 FHDC1Q9C0D6 1143 aaPredicted RBP9.28□□□□□ -0.92
SCFD1-216ENST00000555550 PHF24Q9UPV7 400 aa9.28□□□□□ -0.92
SCFD1-216ENST00000555550 NDUFB9Q9Y6M9 179 aa9.28□□□□□ -0.92
SCFD1-216ENST00000555550 COL8A1P27658 744 aa9.27□□□□□ -0.93
SCFD1-216ENST00000555550 MSX1P28360 303 aa9.27□□□□□ -0.93
SCFD1-216ENST00000555550 MKL2Q9ULH7 1088 aa9.27□□□□□ -0.93
SCFD1-216ENST00000555550 CSB-PGBD3P0DP91 1061 aa9.26□□□□□ -0.93
SCFD1-216ENST00000555550 GTF2E1P29083 439 aaPredicted RBP9.26□□□□□ -0.93
SCFD1-216ENST00000555550 CTBSQ01459 385 aa9.26□□□□□ -0.93
SCFD1-216ENST00000555550 GNASQ5JWF2 1037 aa9.26□□□□□ -0.93
SCFD1-216ENST00000555550 PGBD3Q8N328 593 aa9.26□□□□□ -0.93
SCFD1-216ENST00000555550 ABHD17AQ96GS6 310 aa9.26□□□□□ -0.93
SCFD1-216ENST00000555550 BNIP3LO60238 219 aa9.24□□□□□ -0.93
SCFD1-216ENST00000555550 BMP4P12644 408 aa9.24□□□□□ -0.93
SCFD1-216ENST00000555550 BAG6P46379 1132 aa9.24□□□□□ -0.93
SCFD1-216ENST00000555550 SUV39H2Q9H5I1 410 aa9.24□□□□□ -0.93
SCFD1-216ENST00000555550 GDF2Q9UK05 429 aaPredicted RBP9.24□□□□□ -0.93
SCFD1-216ENST00000555550 AMPD1P23109 780 aa9.23□□□□□ -0.93
SCFD1-216ENST00000555550 EFHC2Q5JST6 749 aa9.23□□□□□ -0.93
SCFD1-216ENST00000555550 ETNK1Q9HBU6 452 aa9.23□□□□□ -0.93
SCFD1-216ENST00000555550 GGA1Q9UJY5 639 aa9.23□□□□□ -0.93
SCFD1-216ENST00000555550 K7ELQ4 463 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-216ENST00000555550 FURINP09958 794 aa9.22□□□□□ -0.93
SCFD1-216ENST00000555550 HOXB4P17483 251 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-216ENST00000555550 GRIN2CQ14957 1233 aa9.22□□□□□ -0.93
SCFD1-216ENST00000555550 ESCO1Q5FWF5 840 aa9.22□□□□□ -0.93
SCFD1-216ENST00000555550 LINC00114Q6XXX2 140 aa9.22□□□□□ -0.93
SCFD1-216ENST00000555550 GOLGA6L1Q8N7Z2 621 aa9.22□□□□□ -0.93
SCFD1-216ENST00000555550 ATXN7L1Q9ULK2 861 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-216ENST00000555550 FGFR3P22607 806 aa9.21□□□□□ -0.94
SCFD1-216ENST00000555550 USP4Q13107 963 aa9.21□□□□□ -0.94
SCFD1-216ENST00000555550 LBRQ14739 615 aaKnown RBP9.21□□□□□ -0.94
SCFD1-216ENST00000555550 PPARGC1BQ86YN6 1023 aaKnown RBP9.21□□□□□ -0.94
SCFD1-216ENST00000555550 PHTF2Q8N3S3 785 aa9.21□□□□□ -0.94
SCFD1-216ENST00000555550 TLR1Q15399 786 aa9.2□□□□□ -0.94
SCFD1-216ENST00000555550 RHBDD1Q8TEB9 315 aa9.2□□□□□ -0.94
SCFD1-216ENST00000555550 BTBD6Q96KE9 485 aa9.2□□□□□ -0.94
SCFD1-216ENST00000555550 NDFIP2Q9NV92 336 aa9.2□□□□□ -0.94
SCFD1-216ENST00000555550 DOLKQ9UPQ8 538 aa9.2□□□□□ -0.94
SCFD1-216ENST00000555550 TBC1D2BQ9UPU7 963 aa9.2□□□□□ -0.94
SCFD1-216ENST00000555550 SOCS7O14512 581 aa9.19□□□□□ -0.94
SCFD1-216ENST00000555550 BRPF1P55201 1214 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-216ENST00000555550 OXLD1Q5BKU9 147 aa9.19□□□□□ -0.94
SCFD1-216ENST00000555550 ZCCHC2Q9C0B9 1178 aaKnown RBP9.19□□□□□ -0.94
SCFD1-216ENST00000555550 PLA2G4AP47712 749 aa9.18□□□□□ -0.94
SCFD1-216ENST00000555550 AIDAQ96BJ3 306 aa9.18□□□□□ -0.94
SCFD1-216ENST00000555550 NEURL1BA8MQ27 555 aa9.17□□□□□ -0.94
SCFD1-216ENST00000555550 APBB1O00213 710 aa9.17□□□□□ -0.94
SCFD1-216ENST00000555550 SLFNL1Q499Z3 407 aa9.17□□□□□ -0.94
SCFD1-216ENST00000555550 SLCO4C1Q6ZQN7 724 aa9.17□□□□□ -0.94
SCFD1-216ENST00000555550 CRISPLD1Q9H336 500 aa9.17□□□□□ -0.94
SCFD1-216ENST00000555550 C1QTNF9BB2RNN3 333 aa9.16□□□□□ -0.94
SCFD1-216ENST00000555550 EPXP11678 715 aa9.16□□□□□ -0.94
SCFD1-216ENST00000555550 EIF4G2P78344 907 aaKnown RBP eCLIP9.16□□□□□ -0.94
SCFD1-216ENST00000555550 TBC1D9Q6ZT07 1266 aa9.16□□□□□ -0.94
SCFD1-216ENST00000555550 RNF135Q8IUD6 432 aa9.16□□□□□ -0.94
SCFD1-216ENST00000555550 IRF5Q13568 498 aa9.15□□□□□ -0.94
SCFD1-216ENST00000555550 ALYREFQ86V81 257 aaKnown RBP9.15□□□□□ -0.94
SCFD1-216ENST00000555550 DNAAF2Q9NVR5 837 aaKnown RBP9.15□□□□□ -0.94
SCFD1-216ENST00000555550 HCN2Q9UL51 889 aa9.15□□□□□ -0.94
SCFD1-216ENST00000555550 PCDHGC4Q9Y5F7 938 aa9.15□□□□□ -0.94
SCFD1-216ENST00000555550 SCNN1DP51172 638 aa9.14□□□□□ -0.95
SCFD1-216ENST00000555550 GNB5O14775 395 aa9.13□□□□□ -0.95
SCFD1-216ENST00000555550 INHAP05111 366 aa9.13□□□□□ -0.95
SCFD1-216ENST00000555550 ARAFP10398 606 aa9.13□□□□□ -0.95
SCFD1-216ENST00000555550 GDF10P55107 478 aa9.13□□□□□ -0.95
SCFD1-216ENST00000555550 FIGNL1Q6PIW4 674 aa9.13□□□□□ -0.95
SCFD1-216ENST00000555550 CD163Q86VB7 1156 aa9.13□□□□□ -0.95
SCFD1-216ENST00000555550 SERTAD1Q9UHV2 236 aa9.13□□□□□ -0.95
SCFD1-216ENST00000555550 KLF15Q9UIH9 416 aa9.13□□□□□ -0.95
SCFD1-216ENST00000555550 DCDC2BA2VCK2 349 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms