RNA–Protein interactions for RNA: ENST00000554508.5

ACTN1-213, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-213ENST00000554508 COL23A1Q86Y22 540 aaPredicted RBP11.76□□□□□ -0.53
ACTN1-213ENST00000554508 ATG3Q9NT62 314 aa11.76□□□□□ -0.53
ACTN1-213ENST00000554508 MSH5O43196 834 aa11.75□□□□□ -0.53
ACTN1-213ENST00000554508 HMOX1P09601 288 aa11.75□□□□□ -0.53
ACTN1-213ENST00000554508 AK7Q96M32 723 aa11.75□□□□□ -0.53
ACTN1-213ENST00000554508 SYT17Q9BSW7 474 aa11.75□□□□□ -0.53
ACTN1-213ENST00000554508 KDM6AO15550 1401 aaPredicted RBP11.75□□□□□ -0.53
ACTN1-213ENST00000554508 CFAP53Q96M91 514 aa11.74□□□□□ -0.53
ACTN1-213ENST00000554508 FHDC1Q9C0D6 1143 aaPredicted RBP11.74□□□□□ -0.53
ACTN1-213ENST00000554508 MAP3K5Q99683 1374 aa11.74□□□□□ -0.53
ACTN1-213ENST00000554508 COL3A1P02461 1466 aaPredicted RBP11.74□□□□□ -0.53
ACTN1-213ENST00000554508 U2SURPO15042 1029 aaKnown RBP11.73□□□□□ -0.53
ACTN1-213ENST00000554508 SSFA2P28290 1259 aa11.73□□□□□ -0.53
ACTN1-213ENST00000554508 NFATC2IPQ8NCF5 419 aa11.73□□□□□ -0.53
ACTN1-213ENST00000554508 LINC00116Q8NCU8 138 aa11.73□□□□□ -0.53
ACTN1-213ENST00000554508 RBM42Q9BTD8 480 aaKnown RBP11.73□□□□□ -0.53
ACTN1-213ENST00000554508 ITPK1Q13572 414 aa11.72□□□□□ -0.53
ACTN1-213ENST00000554508 RC3H1Q5TC82 1133 aaKnown RBP11.72□□□□□ -0.53
ACTN1-213ENST00000554508 NUDCQ9Y266 331 aa11.72□□□□□ -0.53
ACTN1-213ENST00000554508 COL5A3P25940 1745 aaPredicted RBP11.72□□□□□ -0.53
ACTN1-213ENST00000554508 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.71□□□□□ -0.53
ACTN1-213ENST00000554508 RNMTO43148 476 aaKnown RBP11.71□□□□□ -0.53
ACTN1-213ENST00000554508 PPP2R1AP30153 589 aa11.71□□□□□ -0.53
ACTN1-213ENST00000554508 MTHFSDQ2M296 383 aaKnown RBP11.71□□□□□ -0.53
ACTN1-213ENST00000554508 MYH14Q7Z406 1995 aaKnown RBP11.7□□□□□ -0.54
ACTN1-213ENST00000554508 SLC4A9Q96Q91 983 aa11.7□□□□□ -0.54
ACTN1-213ENST00000554508 SLC52A2Q9HAB3 445 aa11.7□□□□□ -0.54
ACTN1-213ENST00000554508 LGR6Q9HBX8 967 aa11.7□□□□□ -0.54
ACTN1-213ENST00000554508 ADAMTS7Q9UKP4 1686 aa11.7□□□□□ -0.54
ACTN1-213ENST00000554508 CHD4Q14839 1912 aa11.7□□□□□ -0.54
ACTN1-213ENST00000554508 GNPATO15228 680 aa11.69□□□□□ -0.54
ACTN1-213ENST00000554508 PHF14O94880 888 aa11.69□□□□□ -0.54
ACTN1-213ENST00000554508 GAS2L2Q8NHY3 880 aa11.69□□□□□ -0.54
ACTN1-213ENST00000554508 RTCBQ9Y3I0 505 aaKnown RBP11.69□□□□□ -0.54
ACTN1-213ENST00000554508 CNTNAP4Q9C0A0 1308 aa11.68□□□□□ -0.54
ACTN1-213ENST00000554508 GNAT3A8MTJ3 354 aa11.68□□□□□ -0.54
ACTN1-213ENST00000554508 PTCD1O75127 700 aaKnown RBP11.68□□□□□ -0.54
ACTN1-213ENST00000554508 TRAPPC3LQ5T215 181 aa11.68□□□□□ -0.54
ACTN1-213ENST00000554508 MSL1Q68DK7 614 aa11.68□□□□□ -0.54
ACTN1-213ENST00000554508 AMIGO3Q86WK7 504 aa11.68□□□□□ -0.54
ACTN1-213ENST00000554508 MRC1P22897 1456 aa11.68□□□□□ -0.54
ACTN1-213ENST00000554508 CICQ96RK0 1608 aaPredicted RBP11.68□□□□□ -0.54
ACTN1-213ENST00000554508 RPS6KA4O75676 772 aa11.67□□□□□ -0.54
ACTN1-213ENST00000554508 FCHSD2O94868 740 aa11.67□□□□□ -0.54
ACTN1-213ENST00000554508 ADRA2BP18089 450 aa11.67□□□□□ -0.54
ACTN1-213ENST00000554508 KLHL34Q8N239 644 aa11.67□□□□□ -0.54
ACTN1-213ENST00000554508 TJP1Q07157 1748 aa11.66□□□□□ -0.54
ACTN1-213ENST00000554508 U2AF1L5P0DN76 240 aaPredicted RBP11.66□□□□□ -0.54
ACTN1-213ENST00000554508 U2AF1Q01081 240 aaKnown RBP eCLIP11.66□□□□□ -0.54
ACTN1-213ENST00000554508 SMIM5Q71RC9 77 aa11.66□□□□□ -0.54
ACTN1-213ENST00000554508 RSPH6AQ9H0K4 717 aa11.66□□□□□ -0.54
ACTN1-213ENST00000554508 CD2APQ9Y5K6 639 aa11.66□□□□□ -0.54
ACTN1-213ENST00000554508 SIPA1L3O60292 1781 aaPredicted RBP11.65□□□□□ -0.54
ACTN1-213ENST00000554508 YY1P25490 414 aa11.65□□□□□ -0.54
ACTN1-213ENST00000554508 PRKAR2BP31323 418 aa11.65□□□□□ -0.54
ACTN1-213ENST00000554508 TEFQ10587 303 aa11.65□□□□□ -0.54
ACTN1-213ENST00000554508 NLGN1Q8N2Q7 840 aa11.65□□□□□ -0.54
ACTN1-213ENST00000554508 ARHGEF1Q92888 912 aaKnown RBP11.65□□□□□ -0.54
ACTN1-213ENST00000554508 UBR2Q8IWV8 1755 aa11.64□□□□□ -0.55
ACTN1-213ENST00000554508 RFC4P35249 363 aa11.64□□□□□ -0.55
ACTN1-213ENST00000554508 CRKLP46109 303 aaKnown RBP11.64□□□□□ -0.55
ACTN1-213ENST00000554508 SLC39A6Q13433 755 aa11.64□□□□□ -0.55
ACTN1-213ENST00000554508 GPR162Q16538 588 aa11.64□□□□□ -0.55
ACTN1-213ENST00000554508 VSIG10Q8N0Z9 540 aa11.64□□□□□ -0.55
ACTN1-213ENST00000554508 IL17REQ8NFR9 667 aa11.64□□□□□ -0.55
ACTN1-213ENST00000554508 PHACTR3Q96KR7 559 aa11.64□□□□□ -0.55
ACTN1-213ENST00000554508 RALBP1Q15311 655 aa11.63□□□□□ -0.55
ACTN1-213ENST00000554508 TTC5Q8N0Z6 440 aa11.63□□□□□ -0.55
ACTN1-213ENST00000554508 NLGN2Q8NFZ4 835 aa11.63□□□□□ -0.55
ACTN1-213ENST00000554508 C4AP0C0L4 1744 aa11.63□□□□□ -0.55
ACTN1-213ENST00000554508 UTRNP46939 3433 aa11.62□□□□□ -0.55
ACTN1-213ENST00000554508 KCPQ6ZWJ8 1503 aa11.62□□□□□ -0.55
ACTN1-213ENST00000554508 HTATSF1O43719 755 aaKnown RBP11.62□□□□□ -0.55
ACTN1-213ENST00000554508 NEFMP07197 916 aa11.62□□□□□ -0.55
ACTN1-213ENST00000554508 INTS5Q6P9B9 1019 aaKnown RBP11.62□□□□□ -0.55
ACTN1-213ENST00000554508 DNAJC10Q8IXB1 793 aa11.62□□□□□ -0.55
ACTN1-213ENST00000554508 RTF1Q92541 710 aaKnown RBP11.62□□□□□ -0.55
ACTN1-213ENST00000554508 TEX13AQ9BXU3 409 aaPredicted RBP11.62□□□□□ -0.55
ACTN1-213ENST00000554508 PNNQ9H307 717 aaKnown RBP11.62□□□□□ -0.55
ACTN1-213ENST00000554508 CCDC87Q9NVE4 849 aa11.62□□□□□ -0.55
ACTN1-213ENST00000554508 CEMIPQ8WUJ3 1361 aa11.62□□□□□ -0.55
ACTN1-213ENST00000554508 KIF13BQ9NQT8 1826 aa11.61□□□□□ -0.55
ACTN1-213ENST00000554508 DLG5Q8TDM6 1919 aa11.61□□□□□ -0.55
ACTN1-213ENST00000554508 GRIN3BO60391 1043 aa11.61□□□□□ -0.55
ACTN1-213ENST00000554508 CYP19A1P11511 503 aaPredicted RBP11.61□□□□□ -0.55
ACTN1-213ENST00000554508 GYS1P13807 737 aa11.61□□□□□ -0.55
ACTN1-213ENST00000554508 DDX10Q13206 875 aaKnown RBP11.61□□□□□ -0.55
ACTN1-213ENST00000554508 ZNF790Q6PG37 636 aa11.61□□□□□ -0.55
ACTN1-213ENST00000554508 STARD3NLO95772 234 aa11.6□□□□□ -0.55
ACTN1-213ENST00000554508 MMP10P09238 476 aa11.6□□□□□ -0.55
ACTN1-213ENST00000554508 PELP1Q8IZL8 1130 aaKnown RBP11.6□□□□□ -0.55
ACTN1-213ENST00000554508 BTBD11A6QL63 1104 aa11.59□□□□□ -0.55
ACTN1-213ENST00000554508 ZPR1O75312 459 aa11.59□□□□□ -0.55
ACTN1-213ENST00000554508 FMNL2Q96PY5 1086 aa11.59□□□□□ -0.55
ACTN1-213ENST00000554508 PARP3Q9Y6F1 533 aa11.59□□□□□ -0.55
ACTN1-213ENST00000554508 SOS1Q07889 1333 aaPredicted RBP11.59□□□□□ -0.55
ACTN1-213ENST00000554508 USP42Q9H9J4 1324 aaKnown RBP11.59□□□□□ -0.55
ACTN1-213ENST00000554508 HEG1Q9ULI3 1381 aa11.58□□□□□ -0.56
ACTN1-213ENST00000554508 ZNF496Q96IT1 587 aaPredicted RBP11.58□□□□□ -0.56
ACTN1-213ENST00000554508 TGFB2P61812 414 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms