RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 MON2Q7Z3U7 1717 aa19.4■□□□□ 0.7
SHMT2-208ENST00000553868 USP31Q70CQ4 1352 aa19.4■□□□□ 0.7
SHMT2-208ENST00000553868 MEGF6O75095 1541 aa19.4■□□□□ 0.7
SHMT2-208ENST00000553868 PALLDQ8WX93 1383 aa19.39■□□□□ 0.69
SHMT2-208ENST00000553868 RGPD2P0DJD1 1756 aa19.39■□□□□ 0.69
SHMT2-208ENST00000553868 FAM208AQ9UK61 1670 aaKnown RBP19.38■□□□□ 0.69
SHMT2-208ENST00000553868 FYB1O15117 783 aa19.37■□□□□ 0.69
SHMT2-208ENST00000553868 PPP2R1AP30153 589 aa19.37■□□□□ 0.69
SHMT2-208ENST00000553868 PKD1L3Q7Z443 1732 aa19.37■□□□□ 0.69
SHMT2-208ENST00000553868 FCHSD2O94868 740 aa19.36■□□□□ 0.69
SHMT2-208ENST00000553868 KIF13BQ9NQT8 1826 aa19.36■□□□□ 0.69
SHMT2-208ENST00000553868 MMP10P09238 476 aa19.35■□□□□ 0.69
SHMT2-208ENST00000553868 SMC1BQ8NDV3 1235 aa19.35■□□□□ 0.69
SHMT2-208ENST00000553868 IP6K1Q92551 441 aa19.35■□□□□ 0.69
SHMT2-208ENST00000553868 KIF20BQ96Q89 1820 aa19.35■□□□□ 0.69
SHMT2-208ENST00000553868 ANKRD26Q9UPS8 1709 aa19.34■□□□□ 0.69
SHMT2-208ENST00000553868 KDM2BQ8NHM5 1336 aa19.34■□□□□ 0.69
SHMT2-208ENST00000553868 DPEP1P16444 411 aa19.34■□□□□ 0.69
SHMT2-208ENST00000553868 MPRIPQ6WCQ1 1025 aa19.34■□□□□ 0.69
SHMT2-208ENST00000553868 GGNBP2Q9H3C7 697 aa19.34■□□□□ 0.69
SHMT2-208ENST00000553868 PLEKHG2Q9H7P9 1386 aa19.33■□□□□ 0.69
SHMT2-208ENST00000553868 PCDH10Q9P2E7 1040 aa19.33■□□□□ 0.68
SHMT2-208ENST00000553868 TGFB2P61812 414 aa19.32■□□□□ 0.68
SHMT2-208ENST00000553868 FAM161AQ3B820 660 aa19.32■□□□□ 0.68
SHMT2-208ENST00000553868 COG3Q96JB2 828 aa19.32■□□□□ 0.68
SHMT2-208ENST00000553868 BRCA1P38398 1863 aaKnown RBP19.31■□□□□ 0.68
SHMT2-208ENST00000553868 CCDC184Q52MB2 194 aa19.31■□□□□ 0.68
SHMT2-208ENST00000553868 LINC00116Q8NCU8 138 aa19.31■□□□□ 0.68
SHMT2-208ENST00000553868 RNF181Q9P0P0 153 aa19.31■□□□□ 0.68
SHMT2-208ENST00000553868 C10orf71Q711Q0 1435 aa19.31■□□□□ 0.68
SHMT2-208ENST00000553868 TNRC6CQ9HCJ0 1690 aaKnown RBP19.3■□□□□ 0.68
SHMT2-208ENST00000553868 FBLN1P23142 703 aa19.3■□□□□ 0.68
SHMT2-208ENST00000553868 SSFA2P28290 1259 aa19.3■□□□□ 0.68
SHMT2-208ENST00000553868 USHBP1Q8N6Y0 703 aa19.3■□□□□ 0.68
SHMT2-208ENST00000553868 CFAP53Q96M91 514 aa19.29■□□□□ 0.68
SHMT2-208ENST00000553868 YTHDC1Q96MU7 727 aaKnown RBP19.28■□□□□ 0.68
SHMT2-208ENST00000553868 GNPATO15228 680 aa19.27■□□□□ 0.68
SHMT2-208ENST00000553868 TNNT2P45379 298 aaPredicted RBP19.27■□□□□ 0.68
SHMT2-208ENST00000553868 ITGB4P16144 1822 aa19.26■□□□□ 0.67
SHMT2-208ENST00000553868 ARFGEF1Q9Y6D6 1849 aa19.26■□□□□ 0.67
SHMT2-208ENST00000553868 FOXN1O15353 648 aa19.26■□□□□ 0.67
SHMT2-208ENST00000553868 KCNA3P22001 575 aa19.26■□□□□ 0.67
SHMT2-208ENST00000553868 HOXC9P31274 260 aa19.26■□□□□ 0.67
SHMT2-208ENST00000553868 FAM9BQ8IZU0 186 aa19.26■□□□□ 0.67
SHMT2-208ENST00000553868 PNISRQ8TF01 805 aaKnown RBP19.26■□□□□ 0.67
SHMT2-208ENST00000553868 NBPF6Q5VWK0 638 aa19.25■□□□□ 0.67
SHMT2-208ENST00000553868 NBPF4Q96M43 638 aa19.25■□□□□ 0.67
SHMT2-208ENST00000553868 MAP2P11137 1827 aaKnown RBP19.25■□□□□ 0.67
SHMT2-208ENST00000553868 MAP3K19Q56UN5 1328 aa19.25■□□□□ 0.67
SHMT2-208ENST00000553868 SBF1O95248 1867 aa19.24■□□□□ 0.67
SHMT2-208ENST00000553868 MKRN1Q9UHC7 482 aaKnown RBP19.24■□□□□ 0.67
SHMT2-208ENST00000553868 HMGB2P26583 209 aaKnown RBP19.23■□□□□ 0.67
SHMT2-208ENST00000553868 MTHFSP49914 203 aa19.23■□□□□ 0.67
SHMT2-208ENST00000553868 ITPK1Q13572 414 aa19.23■□□□□ 0.67
SHMT2-208ENST00000553868 WDR43Q15061 677 aaKnown RBP eCLIP19.23■□□□□ 0.67
SHMT2-208ENST00000553868 PIGBQ92521 554 aa19.23■□□□□ 0.67
SHMT2-208ENST00000553868 SMARCC1Q92922 1105 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-208ENST00000553868 LOC102724428A0A0B4J2F2 783 aa19.22■□□□□ 0.67
SHMT2-208ENST00000553868 SIK1P57059 783 aa19.22■□□□□ 0.67
SHMT2-208ENST00000553868 DCAF5Q96JK2 942 aa19.22■□□□□ 0.67
SHMT2-208ENST00000553868 INSRP06213 1382 aa19.21■□□□□ 0.67
SHMT2-208ENST00000553868 AMPHP49418 695 aa19.21■□□□□ 0.67
SHMT2-208ENST00000553868 CCDC87Q9NVE4 849 aa19.21■□□□□ 0.67
SHMT2-208ENST00000553868 C4AP0C0L4 1744 aa19.2■□□□□ 0.66
SHMT2-208ENST00000553868 CYP27B1O15528 508 aa19.2■□□□□ 0.66
SHMT2-208ENST00000553868 CENPBP07199 599 aaPredicted RBP19.2■□□□□ 0.66
SHMT2-208ENST00000553868 RAPGEF4Q8WZA2 1011 aa19.2■□□□□ 0.66
SHMT2-208ENST00000553868 RASSF7Q02833 373 aa19.19■□□□□ 0.66
SHMT2-208ENST00000553868 PIM2Q9P1W9 311 aa19.19■□□□□ 0.66
SHMT2-208ENST00000553868 PCDH11XQ9BZA7 1347 aa19.19■□□□□ 0.66
SHMT2-208ENST00000553868 PCDH11YQ9BZA8 1340 aa19.19■□□□□ 0.66
SHMT2-208ENST00000553868 VEGFAP15692 232 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-208ENST00000553868 TATP17735 454 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-208ENST00000553868 DALRD3Q5D0E6 543 aaKnown RBP19.18■□□□□ 0.66
SHMT2-208ENST00000553868 PRDM10Q9NQV6 1147 aa19.18■□□□□ 0.66
SHMT2-208ENST00000553868 SMG6Q86US8 1419 aaKnown RBP19.17■□□□□ 0.66
SHMT2-208ENST00000553868 NLGN1Q8N2Q7 840 aa19.17■□□□□ 0.66
SHMT2-208ENST00000553868 NUDCQ9Y266 331 aa19.17■□□□□ 0.66
SHMT2-208ENST00000553868 ATP6V1AP38606 617 aa19.16■□□□□ 0.66
SHMT2-208ENST00000553868 ABHD8Q96I13 439 aa19.16■□□□□ 0.66
SHMT2-208ENST00000553868 POLKQ9UBT6 870 aa19.16■□□□□ 0.66
SHMT2-208ENST00000553868 ASAP1Q9ULH1 1129 aa19.16■□□□□ 0.66
SHMT2-208ENST00000553868 CHRNA5P30532 468 aa19.15■□□□□ 0.66
SHMT2-208ENST00000553868 HNRNPUQ00839 825 aaKnown RBP eCLIP19.15■□□□□ 0.66
SHMT2-208ENST00000553868 TRAPPC3LQ5T215 181 aa19.15■□□□□ 0.66
SHMT2-208ENST00000553868 PARP3Q9Y6F1 533 aa19.15■□□□□ 0.66
SHMT2-208ENST00000553868 GYS1P13807 737 aa19.14■□□□□ 0.65
SHMT2-208ENST00000553868 RRS1Q15050 365 aaKnown RBP19.14■□□□□ 0.65
SHMT2-208ENST00000553868 GLTPD2A6NH11 291 aa19.13■□□□□ 0.65
SHMT2-208ENST00000553868 POTECB2RU33 542 aa19.13■□□□□ 0.65
SHMT2-208ENST00000553868 PPM1GO15355 546 aaPredicted RBP19.13■□□□□ 0.65
SHMT2-208ENST00000553868 ARHGEF1Q92888 912 aaKnown RBP19.13■□□□□ 0.65
SHMT2-208ENST00000553868 KIF24Q5T7B8 1368 aa19.12■□□□□ 0.65
SHMT2-208ENST00000553868 DIAPH1O60610 1272 aaKnown RBP19.12■□□□□ 0.65
SHMT2-208ENST00000553868 CTCFP49711 727 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-208ENST00000553868 LBX1P52954 281 aa19.12■□□□□ 0.65
SHMT2-208ENST00000553868 CREBZFQ9NS37 354 aa19.12■□□□□ 0.65
SHMT2-208ENST00000553868 RTCBQ9Y3I0 505 aaKnown RBP19.12■□□□□ 0.65
SHMT2-208ENST00000553868 MLLT1Q03111 559 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-208ENST00000553868 ADAMTS8Q9UP79 889 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms