RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 PER1O15534 1290 aaPredicted RBP11.24□□□□□ -0.61
PSEN1-209ENST00000553855 USHBP1Q8N6Y0 703 aa11.24□□□□□ -0.61
PSEN1-209ENST00000553855 ZCRB1Q8TBF4 217 aaKnown RBP11.24□□□□□ -0.61
PSEN1-209ENST00000553855 DDX54Q8TDD1 881 aaKnown RBP11.24□□□□□ -0.61
PSEN1-209ENST00000553855 ARHGEF1Q92888 912 aaKnown RBP11.24□□□□□ -0.61
PSEN1-209ENST00000553855 TMEM106CQ9BVX2 250 aa11.24□□□□□ -0.61
PSEN1-209ENST00000553855 NPC1L1Q9UHC9 1359 aa11.24□□□□□ -0.61
PSEN1-209ENST00000553855 ANKRD26Q9UPS8 1709 aa11.23□□□□□ -0.61
PSEN1-209ENST00000553855 BRWD3Q6RI45 1802 aa11.23□□□□□ -0.61
PSEN1-209ENST00000553855 TULP1O00294 542 aaPredicted RBP11.23□□□□□ -0.61
PSEN1-209ENST00000553855 APBA3O96018 575 aa11.23□□□□□ -0.61
PSEN1-209ENST00000553855 TMEM132AQ24JP5 1023 aa11.23□□□□□ -0.61
PSEN1-209ENST00000553855 CFAP53Q96M91 514 aa11.23□□□□□ -0.61
PSEN1-209ENST00000553855 BMP2KQ9NSY1 1161 aaPredicted RBP11.23□□□□□ -0.61
PSEN1-209ENST00000553855 GTF3C3Q9Y5Q9 886 aa11.23□□□□□ -0.61
PSEN1-209ENST00000553855 DISP2A7MBM2 1401 aa11.23□□□□□ -0.61
PSEN1-209ENST00000553855 TNS2Q63HR2 1409 aa11.23□□□□□ -0.61
PSEN1-209ENST00000553855 PARP4Q9UKK3 1724 aaKnown RBP11.23□□□□□ -0.61
PSEN1-209ENST00000553855 ATMINO43313 823 aaPredicted RBP11.22□□□□□ -0.61
PSEN1-209ENST00000553855 POTEIP0CG38 1075 aa11.22□□□□□ -0.61
PSEN1-209ENST00000553855 EIF4A2Q14240 407 aaKnown RBP11.22□□□□□ -0.61
PSEN1-209ENST00000553855 MARCH10Q8NA82 808 aaPredicted RBP11.22□□□□□ -0.61
PSEN1-209ENST00000553855 SPG7Q9UQ90 795 aa11.22□□□□□ -0.61
PSEN1-209ENST00000553855 MTHFSP49914 203 aa11.21□□□□□ -0.61
PSEN1-209ENST00000553855 E2F4Q16254 413 aa11.21□□□□□ -0.61
PSEN1-209ENST00000553855 ASTLQ6HA08 431 aaPredicted RBP11.21□□□□□ -0.61
PSEN1-209ENST00000553855 EYA1Q99502 592 aa11.21□□□□□ -0.61
PSEN1-209ENST00000553855 LRRC37A3O60309 1634 aa11.2□□□□□ -0.62
PSEN1-209ENST00000553855 PCDH11XQ9BZA7 1347 aa11.2□□□□□ -0.62
PSEN1-209ENST00000553855 PCDH11YQ9BZA8 1340 aa11.2□□□□□ -0.62
PSEN1-209ENST00000553855 TTLL13PA6NNM8 815 aa11.2□□□□□ -0.62
PSEN1-209ENST00000553855 DEFB132Q7Z7B7 95 aa11.2□□□□□ -0.62
PSEN1-209ENST00000553855 PEAK1Q9H792 1746 aa11.19□□□□□ -0.62
PSEN1-209ENST00000553855 DIAPH1O60610 1272 aaKnown RBP11.19□□□□□ -0.62
PSEN1-209ENST00000553855 ATN1P54259 1190 aaPredicted RBP11.19□□□□□ -0.62
PSEN1-209ENST00000553855 EN1Q05925 392 aaPredicted RBP11.19□□□□□ -0.62
PSEN1-209ENST00000553855 DDX10Q13206 875 aaKnown RBP11.19□□□□□ -0.62
PSEN1-209ENST00000553855 SYTL4Q96C24 671 aaPredicted RBP11.19□□□□□ -0.62
PSEN1-209ENST00000553855 NUDCQ9Y266 331 aa11.19□□□□□ -0.62
PSEN1-209ENST00000553855 MAP2P11137 1827 aaKnown RBP11.19□□□□□ -0.62
PSEN1-209ENST00000553855 RGPD1P0DJD0 1748 aa11.18□□□□□ -0.62
PSEN1-209ENST00000553855 PARD3Q8TEW0 1356 aa11.18□□□□□ -0.62
PSEN1-209ENST00000553855 PLEKHO1Q53GL0 409 aaPredicted RBP11.18□□□□□ -0.62
PSEN1-209ENST00000553855 NBPF14Q5TI25 921 aa11.18□□□□□ -0.62
PSEN1-209ENST00000553855 ACSBG1Q96GR2 724 aa11.18□□□□□ -0.62
PSEN1-209ENST00000553855 WNK3Q9BYP7 1800 aa11.18□□□□□ -0.62
PSEN1-209ENST00000553855 BCL9O00512 1426 aa11.18□□□□□ -0.62
PSEN1-209ENST00000553855 IGSF1Q8N6C5 1336 aa11.17□□□□□ -0.62
PSEN1-209ENST00000553855 U2SURPO15042 1029 aaKnown RBP11.17□□□□□ -0.62
PSEN1-209ENST00000553855 GOLGA2Q08379 1002 aa11.17□□□□□ -0.62
PSEN1-209ENST00000553855 AMOTQ4VCS5 1084 aa11.17□□□□□ -0.62
PSEN1-209ENST00000553855 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.17□□□□□ -0.626e-6■□□□□ 8.9
PSEN1-209ENST00000553855 MEGF6O75095 1541 aa11.16□□□□□ -0.62
PSEN1-209ENST00000553855 HSP90AB1P08238 724 aaKnown RBP11.16□□□□□ -0.62
PSEN1-209ENST00000553855 EZH2Q15910 746 aaKnown RBP11.16□□□□□ -0.62
PSEN1-209ENST00000553855 SULT6B1Q6IMI4 303 aa11.16□□□□□ -0.62
PSEN1-209ENST00000553855 IFNL2Q8IZJ0 200 aa11.16□□□□□ -0.62
PSEN1-209ENST00000553855 PLEKHG2Q9H7P9 1386 aa11.16□□□□□ -0.62
PSEN1-209ENST00000553855 PLSCR1O15162 318 aa11.15□□□□□ -0.62
PSEN1-209ENST00000553855 HMGB2P26583 209 aaKnown RBP11.15□□□□□ -0.62
PSEN1-209ENST00000553855 IL13P35225 146 aa11.15□□□□□ -0.62
PSEN1-209ENST00000553855 RALBP1Q15311 655 aa11.15□□□□□ -0.62
PSEN1-209ENST00000553855 C1orf141Q5JVX7 400 aa11.15□□□□□ -0.62
PSEN1-209ENST00000553855 TRIM35Q9UPQ4 493 aa11.15□□□□□ -0.62
PSEN1-209ENST00000553855 ZNF316A6NFI3 1004 aaPredicted RBP11.14□□□□□ -0.63
PSEN1-209ENST00000553855 NEFMP07197 916 aa11.14□□□□□ -0.63
PSEN1-209ENST00000553855 PPP2R1AP30153 589 aa11.14□□□□□ -0.63
PSEN1-209ENST00000553855 PRIM1P49642 420 aaKnown RBP11.14□□□□□ -0.63
PSEN1-209ENST00000553855 PELP1Q8IZL8 1130 aaKnown RBP11.14□□□□□ -0.63
PSEN1-209ENST00000553855 CAMKK2Q96RR4 588 aa11.14□□□□□ -0.63
PSEN1-209ENST00000553855 NCAPD2Q15021 1401 aa11.13□□□□□ -0.63
PSEN1-209ENST00000553855 TESPA1A2RU30 521 aaPredicted RBP11.13□□□□□ -0.63
PSEN1-209ENST00000553855 KCNQ2O43526 872 aa11.13□□□□□ -0.63
PSEN1-209ENST00000553855 ZNF530Q6P9A1 599 aaPredicted RBP11.13□□□□□ -0.63
PSEN1-209ENST00000553855 SLC39A7Q92504 469 aa11.13□□□□□ -0.63
PSEN1-209ENST00000553855 HMOX1P09601 288 aa11.12□□□□□ -0.63
PSEN1-209ENST00000553855 ERICH6Q7L0X2 663 aa11.12□□□□□ -0.63
PSEN1-209ENST00000553855 RGPD2P0DJD1 1756 aa11.12□□□□□ -0.63
PSEN1-209ENST00000553855 SEMA3EO15041 775 aa11.11□□□□□ -0.63
PSEN1-209ENST00000553855 CYP27B1O15528 508 aa11.11□□□□□ -0.63
PSEN1-209ENST00000553855 U2AF1L5P0DN76 240 aaPredicted RBP11.11□□□□□ -0.63
PSEN1-209ENST00000553855 C7P10643 843 aa11.11□□□□□ -0.63
PSEN1-209ENST00000553855 PHKG2P15735 406 aa11.11□□□□□ -0.63
PSEN1-209ENST00000553855 PDE4AP27815 886 aa11.11□□□□□ -0.63
PSEN1-209ENST00000553855 U2AF1Q01081 240 aaKnown RBP eCLIP11.11□□□□□ -0.63
PSEN1-209ENST00000553855 AEBP1Q8IUX7 1158 aa11.11□□□□□ -0.63
PSEN1-209ENST00000553855 ZC3H15Q8WU90 426 aaKnown RBP11.11□□□□□ -0.63
PSEN1-209ENST00000553855 MS4A4AQ96JQ5 239 aa11.11□□□□□ -0.63
PSEN1-209ENST00000553855 MKRN3Q13064 507 aaKnown RBP11.1□□□□□ -0.63
PSEN1-209ENST00000553855 TXNRD1Q16881 649 aa11.1□□□□□ -0.63
PSEN1-209ENST00000553855 MPRIPQ6WCQ1 1025 aa11.1□□□□□ -0.63
PSEN1-209ENST00000553855 SMARCC1Q92922 1105 aaPredicted RBP11.1□□□□□ -0.63
PSEN1-209ENST00000553855 DCAF5Q96JK2 942 aa11.1□□□□□ -0.63
PSEN1-209ENST00000553855 LARP6Q9BRS8 491 aaKnown RBP11.1□□□□□ -0.63
PSEN1-209ENST00000553855 PNNQ9H307 717 aaKnown RBP11.1□□□□□ -0.63
PSEN1-209ENST00000553855 STK32BQ9NY57 414 aa11.1□□□□□ -0.63
PSEN1-209ENST00000553855 TMOD3Q9NYL9 352 aa11.1□□□□□ -0.63
PSEN1-209ENST00000553855 TNS1Q9HBL0 1735 aaKnown RBP11.09□□□□□ -0.63
PSEN1-209ENST00000553855 KDRP35968 1356 aa11.09□□□□□ -0.63
PSEN1-209ENST00000553855 SEC24BO95487 1268 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms