RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 CABP4P57796 275 aa17.32■□□□□ 0.36
LINC00643-202ENST00000553426 AMER1Q5JTC6 1135 aaPredicted RBP17.32■□□□□ 0.36
LINC00643-202ENST00000553426 COL24A1Q17RW2 1714 aa17.32■□□□□ 0.36
LINC00643-202ENST00000553426 TAF1LQ8IZX4 1826 aa17.31■□□□□ 0.36
LINC00643-202ENST00000553426 MTHFSP49914 203 aa17.31■□□□□ 0.36
LINC00643-202ENST00000553426 SULT6B1Q6IMI4 303 aa17.31■□□□□ 0.36
LINC00643-202ENST00000553426 LINC00116Q8NCU8 138 aa17.31■□□□□ 0.36
LINC00643-202ENST00000553426 ATG3Q9NT62 314 aa17.31■□□□□ 0.36
LINC00643-202ENST00000553426 GNPATO15228 680 aa17.3■□□□□ 0.36
LINC00643-202ENST00000553426 IFFO2Q5TF58 517 aa17.3■□□□□ 0.36
LINC00643-202ENST00000553426 AEBP1Q8IUX7 1158 aa17.3■□□□□ 0.36
LINC00643-202ENST00000553426 NLGN2Q8NFZ4 835 aa17.3■□□□□ 0.36
LINC00643-202ENST00000553426 RBM42Q9BTD8 480 aaKnown RBP17.3■□□□□ 0.36
LINC00643-202ENST00000553426 IL13P35225 146 aa17.29■□□□□ 0.36
LINC00643-202ENST00000553426 CD2APQ9Y5K6 639 aa17.29■□□□□ 0.36
LINC00643-202ENST00000553426 CEP350Q5VT06 3117 aa17.29■□□□□ 0.36
LINC00643-202ENST00000553426 GRIN3BO60391 1043 aa17.28■□□□□ 0.36
LINC00643-202ENST00000553426 ITPK1Q13572 414 aa17.28■□□□□ 0.36
LINC00643-202ENST00000553426 CC2D1BQ5T0F9 858 aaKnown RBP17.27■□□□□ 0.36
LINC00643-202ENST00000553426 RTCBQ9Y3I0 505 aaKnown RBP17.27■□□□□ 0.36
LINC00643-202ENST00000553426 KDRP35968 1356 aa17.27■□□□□ 0.35
LINC00643-202ENST00000553426 PER1O15534 1290 aaPredicted RBP17.25■□□□□ 0.35
LINC00643-202ENST00000553426 GIGYF1O75420 1035 aaPredicted RBP17.25■□□□□ 0.35
LINC00643-202ENST00000553426 TRAPPC3LQ5T215 181 aa17.25■□□□□ 0.35
LINC00643-202ENST00000553426 AMIGO3Q86WK7 504 aa17.25■□□□□ 0.35
LINC00643-202ENST00000553426 UBR3Q6ZT12 1888 aa17.24■□□□□ 0.35
LINC00643-202ENST00000553426 KDM6AO15550 1401 aaPredicted RBP17.24■□□□□ 0.35
LINC00643-202ENST00000553426 DIAPH1O60610 1272 aaKnown RBP17.24■□□□□ 0.35
LINC00643-202ENST00000553426 RC3H1Q5TC82 1133 aaKnown RBP17.24■□□□□ 0.35
LINC00643-202ENST00000553426 NFATC2IPQ8NCF5 419 aa17.24■□□□□ 0.35
LINC00643-202ENST00000553426 ADRA2BP18089 450 aa17.23■□□□□ 0.35
LINC00643-202ENST00000553426 AKAP4Q5JQC9 854 aa17.23■□□□□ 0.35
LINC00643-202ENST00000553426 SMIM5Q71RC9 77 aa17.23■□□□□ 0.35
LINC00643-202ENST00000553426 PTCD1O75127 700 aaKnown RBP17.22■□□□□ 0.35
LINC00643-202ENST00000553426 HMOX1P09601 288 aa17.22■□□□□ 0.35
LINC00643-202ENST00000553426 RFC4P35249 363 aa17.21■□□□□ 0.35
LINC00643-202ENST00000553426 CNGB1Q14028 1251 aaPredicted RBP17.21■□□□□ 0.35
LINC00643-202ENST00000553426 NLGN1Q8N2Q7 840 aa17.21■□□□□ 0.35
LINC00643-202ENST00000553426 SLC4A9Q96Q91 983 aa17.21■□□□□ 0.35
LINC00643-202ENST00000553426 CNTNAP4Q9C0A0 1308 aa17.21■□□□□ 0.34
LINC00643-202ENST00000553426 NPC1L1Q9UHC9 1359 aa17.2■□□□□ 0.34
LINC00643-202ENST00000553426 YBX3P16989 372 aaKnown RBP eCLIP17.2■□□□□ 0.34
LINC00643-202ENST00000553426 RPS6KA4O75676 772 aa17.19■□□□□ 0.34
LINC00643-202ENST00000553426 MMP10P09238 476 aa17.19■□□□□ 0.34
LINC00643-202ENST00000553426 ZNF831Q5JPB2 1677 aa17.19■□□□□ 0.34
LINC00643-202ENST00000553426 ARHGEF1Q92888 912 aaKnown RBP17.18■□□□□ 0.34
LINC00643-202ENST00000553426 SLC52A2Q9HAB3 445 aa17.18■□□□□ 0.34
LINC00643-202ENST00000553426 U2SURPO15042 1029 aaKnown RBP17.17■□□□□ 0.34
LINC00643-202ENST00000553426 RNMTO43148 476 aaKnown RBP17.16■□□□□ 0.34
LINC00643-202ENST00000553426 CRKLP46109 303 aaKnown RBP17.16■□□□□ 0.34
LINC00643-202ENST00000553426 CFAP53Q96M91 514 aa17.16■□□□□ 0.34
LINC00643-202ENST00000553426 MTHFSDQ2M296 383 aaKnown RBP17.15■□□□□ 0.34
LINC00643-202ENST00000553426 LGR6Q9HBX8 967 aa17.15■□□□□ 0.34
LINC00643-202ENST00000553426 PARP3Q9Y6F1 533 aa17.15■□□□□ 0.34
LINC00643-202ENST00000553426 CCDC87Q9NVE4 849 aa17.14■□□□□ 0.33
LINC00643-202ENST00000553426 SCN11AQ9UI33 1791 aa17.14■□□□□ 0.33
LINC00643-202ENST00000553426 COL5A3P25940 1745 aaPredicted RBP17.13■□□□□ 0.33
LINC00643-202ENST00000553426 GYS1P13807 737 aa17.13■□□□□ 0.33
LINC00643-202ENST00000553426 TGFB2P61812 414 aa17.13■□□□□ 0.33
LINC00643-202ENST00000553426 ATP10DQ9P241 1426 aa17.13■□□□□ 0.33
LINC00643-202ENST00000553426 TTC5Q8N0Z6 440 aa17.12■□□□□ 0.33
LINC00643-202ENST00000553426 GAS2L2Q8NHY3 880 aa17.12■□□□□ 0.33
LINC00643-202ENST00000553426 WWC3Q9ULE0 1092 aa17.12■□□□□ 0.33
LINC00643-202ENST00000553426 NUDCQ9Y266 331 aa17.12■□□□□ 0.33
LINC00643-202ENST00000553426 ZPR1O75312 459 aa17.11■□□□□ 0.33
LINC00643-202ENST00000553426 DNAJC10Q8IXB1 793 aa17.11■□□□□ 0.33
LINC00643-202ENST00000553426 GNAT3A8MTJ3 354 aa17.1■□□□□ 0.33
LINC00643-202ENST00000553426 TEFQ10587 303 aa17.1■□□□□ 0.33
LINC00643-202ENST00000553426 SLC39A6Q13433 755 aa17.1■□□□□ 0.33
LINC00643-202ENST00000553426 CICQ96RK0 1608 aaPredicted RBP17.1■□□□□ 0.33
LINC00643-202ENST00000553426 INTS5Q6P9B9 1019 aaKnown RBP17.09■□□□□ 0.33
LINC00643-202ENST00000553426 VSIG10Q8N0Z9 540 aa17.09■□□□□ 0.33
LINC00643-202ENST00000553426 USP42Q9H9J4 1324 aaKnown RBP17.09■□□□□ 0.33
LINC00643-202ENST00000553426 MRC1P22897 1456 aa17.09■□□□□ 0.33
LINC00643-202ENST00000553426 MYH14Q7Z406 1995 aaKnown RBP17.08■□□□□ 0.33
LINC00643-202ENST00000553426 COL3A1P02461 1466 aaPredicted RBP17.08■□□□□ 0.32
LINC00643-202ENST00000553426 SRP68Q9UHB9 627 aaKnown RBP17.08■□□□□ 0.32
LINC00643-202ENST00000553426 C10orf71Q711Q0 1435 aa17.07■□□□□ 0.32
LINC00643-202ENST00000553426 A0A0G2JLW4 131 aa17.07■□□□□ 0.32
LINC00643-202ENST00000553426 STARD3NLO95772 234 aa17.07■□□□□ 0.32
LINC00643-202ENST00000553426 CYP19A1P11511 503 aaPredicted RBP17.07■□□□□ 0.32
LINC00643-202ENST00000553426 BCS1LQ9Y276 419 aa17.07■□□□□ 0.32
LINC00643-202ENST00000553426 FKBP8Q14318 412 aa17.06■□□□□ 0.32
LINC00643-202ENST00000553426 GPBP1L1Q9HC44 474 aaPredicted RBP17.06■□□□□ 0.32
LINC00643-202ENST00000553426 C4AP0C0L4 1744 aa17.06■□□□□ 0.32
LINC00643-202ENST00000553426 TJP1Q07157 1748 aa17.06■□□□□ 0.32
LINC00643-202ENST00000553426 PXDNLA1KZ92 1463 aa17.05■□□□□ 0.32
LINC00643-202ENST00000553426 ADCY9O60503 1353 aa17.05■□□□□ 0.32
LINC00643-202ENST00000553426 SOS1Q07889 1333 aaPredicted RBP17.05■□□□□ 0.32
LINC00643-202ENST00000553426 DPEP1P16444 411 aa17.05■□□□□ 0.32
LINC00643-202ENST00000553426 PRKAR2BP31323 418 aa17.05■□□□□ 0.32
LINC00643-202ENST00000553426 ZNF526Q8TF50 670 aaPredicted RBP17.05■□□□□ 0.32
LINC00643-202ENST00000553426 TEX13AQ9BXU3 409 aaPredicted RBP17.05■□□□□ 0.32
LINC00643-202ENST00000553426 FCHSD2O94868 740 aa17.04■□□□□ 0.32
LINC00643-202ENST00000553426 U2AF1L5P0DN76 240 aaPredicted RBP17.04■□□□□ 0.32
LINC00643-202ENST00000553426 PPP2R1AP30153 589 aa17.04■□□□□ 0.32
LINC00643-202ENST00000553426 U2AF1Q01081 240 aaKnown RBP eCLIP17.04■□□□□ 0.32
LINC00643-202ENST00000553426 USPL1Q5W0Q7 1092 aa17.04■□□□□ 0.32
LINC00643-202ENST00000553426 NPM2Q86SE8 214 aaKnown RBP17.04■□□□□ 0.32
LINC00643-202ENST00000553426 NARFQ9UHQ1 456 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms