RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 N4BP2Q86UW6 1770 aaPredicted RBP12.64□□□□□ -0.39
SYNE2-209ENST00000553308 WASHC2AQ641Q2 1341 aa12.63□□□□□ -0.39
SYNE2-209ENST00000553308 ATG3Q9NT62 314 aa12.63□□□□□ -0.39
SYNE2-209ENST00000553308 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.63□□□□□ -0.39
SYNE2-209ENST00000553308 KDRP35968 1356 aa12.63□□□□□ -0.39
SYNE2-209ENST00000553308 CEP350Q5VT06 3117 aa12.63□□□□□ -0.39
SYNE2-209ENST00000553308 IFNL2Q8IZJ0 200 aa12.62□□□□□ -0.39
SYNE2-209ENST00000553308 C10orf71Q711Q0 1435 aa12.62□□□□□ -0.39
SYNE2-209ENST00000553308 SLC4A9Q96Q91 983 aa12.61□□□□□ -0.39
SYNE2-209ENST00000553308 POLKQ9UBT6 870 aa12.61□□□□□ -0.39
SYNE2-209ENST00000553308 COL5A3P25940 1745 aaPredicted RBP12.6□□□□□ -0.39
SYNE2-209ENST00000553308 EIF4A2Q14240 407 aaKnown RBP12.6□□□□□ -0.39
SYNE2-209ENST00000553308 BCS1LQ9Y276 419 aa12.6□□□□□ -0.39
SYNE2-209ENST00000553308 ZNF831Q5JPB2 1677 aa12.6□□□□□ -0.39
SYNE2-209ENST00000553308 C4AP0C0L4 1744 aa12.59□□□□□ -0.39
SYNE2-209ENST00000553308 A0A0G2JLW4 131 aa12.59□□□□□ -0.39
SYNE2-209ENST00000553308 RTCBQ9Y3I0 505 aaKnown RBP12.59□□□□□ -0.39
SYNE2-209ENST00000553308 BRCA1P38398 1863 aaKnown RBP12.58□□□□□ -0.4
SYNE2-209ENST00000553308 TNNT2P45379 298 aaPredicted RBP12.58□□□□□ -0.4
SYNE2-209ENST00000553308 TGFB2P61812 414 aa12.58□□□□□ -0.4
SYNE2-209ENST00000553308 TRAPPC3LQ5T215 181 aa12.58□□□□□ -0.4
SYNE2-209ENST00000553308 ARHGEF1Q92888 912 aaKnown RBP12.58□□□□□ -0.4
SYNE2-209ENST00000553308 RBM42Q9BTD8 480 aaKnown RBP12.58□□□□□ -0.4
SYNE2-209ENST00000553308 KDM6AO15550 1401 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-209ENST00000553308 GYS1P13807 737 aa12.57□□□□□ -0.4
SYNE2-209ENST00000553308 DPEP1P16444 411 aa12.57□□□□□ -0.4
SYNE2-209ENST00000553308 NLGN1Q8N2Q7 840 aa12.57□□□□□ -0.4
SYNE2-209ENST00000553308 NMRK2Q9NPI5 230 aa12.57□□□□□ -0.4
SYNE2-209ENST00000553308 CNTNAP4Q9C0A0 1308 aa12.57□□□□□ -0.4
SYNE2-209ENST00000553308 PLEKHG2Q9H7P9 1386 aa12.56□□□□□ -0.4
SYNE2-209ENST00000553308 ADRA2BP18089 450 aa12.56□□□□□ -0.4
SYNE2-209ENST00000553308 APLP1P51693 650 aa12.56□□□□□ -0.4
SYNE2-209ENST00000553308 ARHGAP27Q6ZUM4 889 aa12.56□□□□□ -0.4
SYNE2-209ENST00000553308 CCDC87Q9NVE4 849 aa12.56□□□□□ -0.4
SYNE2-209ENST00000553308 MYH14Q7Z406 1995 aaKnown RBP12.56□□□□□ -0.4
SYNE2-209ENST00000553308 ERVV-2B6SEH9 535 aa12.55□□□□□ -0.4
SYNE2-209ENST00000553308 RPS6KA4O75676 772 aa12.55□□□□□ -0.4
SYNE2-209ENST00000553308 TOMM70O94826 608 aa12.55□□□□□ -0.4
SYNE2-209ENST00000553308 FCHSD2O94868 740 aa12.55□□□□□ -0.4
SYNE2-209ENST00000553308 RC3H1Q5TC82 1133 aaKnown RBP12.55□□□□□ -0.4
SYNE2-209ENST00000553308 DCAF5Q96JK2 942 aa12.55□□□□□ -0.4
SYNE2-209ENST00000553308 POLR3GLQ9BT43 218 aa12.55□□□□□ -0.4
SYNE2-209ENST00000553308 PARP3Q9Y6F1 533 aa12.55□□□□□ -0.4
SYNE2-209ENST00000553308 ARFGEF1Q9Y6D6 1849 aa12.54□□□□□ -0.4
SYNE2-209ENST00000553308 RFC4P35249 363 aa12.54□□□□□ -0.4
SYNE2-209ENST00000553308 ZNF530Q6P9A1 599 aaPredicted RBP12.54□□□□□ -0.4
SYNE2-209ENST00000553308 TJP1Q07157 1748 aa12.54□□□□□ -0.4
SYNE2-209ENST00000553308 WDR90Q96KV7 1748 aa12.54□□□□□ -0.4
SYNE2-209ENST00000553308 HSP90AB1P08238 724 aaKnown RBP12.53□□□□□ -0.4
SYNE2-209ENST00000553308 KCNA3P22001 575 aa12.53□□□□□ -0.4
SYNE2-209ENST00000553308 CABP4P57796 275 aa12.53□□□□□ -0.4
SYNE2-209ENST00000553308 DNAJC5GQ8N7S2 189 aa12.53□□□□□ -0.4
SYNE2-209ENST00000553308 PTCD1O75127 700 aaKnown RBP12.52□□□□□ -0.41
SYNE2-209ENST00000553308 CRKLP46109 303 aaKnown RBP12.52□□□□□ -0.41
SYNE2-209ENST00000553308 PLEKHO1Q53GL0 409 aaPredicted RBP12.52□□□□□ -0.41
SYNE2-209ENST00000553308 C9orf131Q5VYM1 1079 aa12.52□□□□□ -0.41
SYNE2-209ENST00000553308 AEBP1Q8IUX7 1158 aa12.52□□□□□ -0.41
SYNE2-209ENST00000553308 SRP68Q9UHB9 627 aaKnown RBP12.52□□□□□ -0.41
SYNE2-209ENST00000553308 KCPQ6ZWJ8 1503 aa12.52□□□□□ -0.41
SYNE2-209ENST00000553308 DDR1Q08345 913 aa12.51□□□□□ -0.41
SYNE2-209ENST00000553308 FKBP8Q14318 412 aa12.51□□□□□ -0.41
SYNE2-209ENST00000553308 ADAMTS7Q9UKP4 1686 aa12.51□□□□□ -0.41
SYNE2-209ENST00000553308 MTHFSP49914 203 aa12.5□□□□□ -0.41
SYNE2-209ENST00000553308 HTRA3P83110 453 aa12.5□□□□□ -0.41
SYNE2-209ENST00000553308 AMOTQ4VCS5 1084 aa12.5□□□□□ -0.41
SYNE2-209ENST00000553308 RBM46Q8TBY0 533 aaKnown RBP12.5□□□□□ -0.41
SYNE2-209ENST00000553308 PIM2Q9P1W9 311 aa12.5□□□□□ -0.41
SYNE2-209ENST00000553308 USP42Q9H9J4 1324 aaKnown RBP12.5□□□□□ -0.41
SYNE2-209ENST00000553308 CHRNA5P30532 468 aa12.49□□□□□ -0.41
SYNE2-209ENST00000553308 C1orf141Q5JVX7 400 aa12.49□□□□□ -0.41
SYNE2-209ENST00000553308 NFATC2IPQ8NCF5 419 aa12.49□□□□□ -0.41
SYNE2-209ENST00000553308 DALRD3Q5D0E6 543 aaKnown RBP12.48□□□□□ -0.41
SYNE2-209ENST00000553308 C16orf71Q8IYS4 520 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-209ENST00000553308 RNF181Q9P0P0 153 aa12.48□□□□□ -0.41
SYNE2-209ENST00000553308 SCN11AQ9UI33 1791 aa12.48□□□□□ -0.41
SYNE2-209ENST00000553308 TNRC6CQ9HCJ0 1690 aaKnown RBP12.48□□□□□ -0.41
SYNE2-209ENST00000553308 POLRMTO00411 1230 aaKnown RBP12.47□□□□□ -0.41
SYNE2-209ENST00000553308 INTS5Q6P9B9 1019 aaKnown RBP12.47□□□□□ -0.41
SYNE2-209ENST00000553308 PANK3Q9H999 370 aa12.47□□□□□ -0.41
SYNE2-209ENST00000553308 SBF1O95248 1867 aa12.46□□□□□ -0.41
SYNE2-209ENST00000553308 KDM2BQ8NHM5 1336 aa12.46□□□□□ -0.41
SYNE2-209ENST00000553308 SULT6B1Q6IMI4 303 aa12.46□□□□□ -0.41
SYNE2-209ENST00000553308 DNAJC10Q8IXB1 793 aa12.46□□□□□ -0.41
SYNE2-209ENST00000553308 KLRG1Q96E93 195 aa12.46□□□□□ -0.41
SYNE2-209ENST00000553308 TM4SF1P30408 202 aa12.45□□□□□ -0.42
SYNE2-209ENST00000553308 RASSF7Q02833 373 aa12.45□□□□□ -0.42
SYNE2-209ENST00000553308 FSTL1Q12841 308 aa12.45□□□□□ -0.42
SYNE2-209ENST00000553308 USPL1Q5W0Q7 1092 aa12.45□□□□□ -0.42
SYNE2-209ENST00000553308 RRAGCQ9HB90 399 aa12.45□□□□□ -0.42
SYNE2-209ENST00000553308 AFDNP55196 1824 aaKnown RBP12.44□□□□□ -0.42
SYNE2-209ENST00000553308 SOS1Q07889 1333 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-209ENST00000553308 TRIM26Q12899 539 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-209ENST00000553308 MORC1Q86VD1 984 aa12.44□□□□□ -0.42
SYNE2-209ENST00000553308 JMYQ8N9B5 988 aa12.44□□□□□ -0.42
SYNE2-209ENST00000553308 TIMELESSQ9UNS1 1208 aa12.44□□□□□ -0.42
SYNE2-209ENST00000553308 MRC1P22897 1456 aa12.44□□□□□ -0.42
SYNE2-209ENST00000553308 NRXN2Q9P2S2 1712 aa12.43□□□□□ -0.42
SYNE2-209ENST00000553308 ZPR1O75312 459 aa12.43□□□□□ -0.42
SYNE2-209ENST00000553308 HSPA5P11021 654 aaKnown RBP12.43□□□□□ -0.42
SYNE2-209ENST00000553308 IL13P35225 146 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms