RNA–Protein interactions for RNA: ENST00000553290.1

ACTN1-207, Transcript of actinin alpha 1, humanhuman

TSL 5

Gene ACTN1, Length 619 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-207ENST00000553290 SYT17Q9BSW7 474 aa17.48■□□□□ 0.39
ACTN1-207ENST00000553290 ATP6V1AP38606 617 aa17.47■□□□□ 0.39
ACTN1-207ENST00000553290 AKAP4Q5JQC9 854 aa17.47■□□□□ 0.39
ACTN1-207ENST00000553290 COL3A1P02461 1466 aaPredicted RBP17.46■□□□□ 0.39
ACTN1-207ENST00000553290 MAP3K5Q99683 1374 aa17.46■□□□□ 0.39
ACTN1-207ENST00000553290 LINC00116Q8NCU8 138 aa17.45■□□□□ 0.38
ACTN1-207ENST00000553290 SCN11AQ9UI33 1791 aa17.45■□□□□ 0.38
ACTN1-207ENST00000553290 ZNF831Q5JPB2 1677 aa17.45■□□□□ 0.38
ACTN1-207ENST00000553290 UBR3Q6ZT12 1888 aa17.44■□□□□ 0.38
ACTN1-207ENST00000553290 ITPK1Q13572 414 aa17.44■□□□□ 0.38
ACTN1-207ENST00000553290 CFAP53Q96M91 514 aa17.44■□□□□ 0.38
ACTN1-207ENST00000553290 U2SURPO15042 1029 aaKnown RBP17.43■□□□□ 0.38
ACTN1-207ENST00000553290 SSFA2P28290 1259 aa17.43■□□□□ 0.38
ACTN1-207ENST00000553290 NFATC2IPQ8NCF5 419 aa17.43■□□□□ 0.38
ACTN1-207ENST00000553290 RBM42Q9BTD8 480 aaKnown RBP17.43■□□□□ 0.38
ACTN1-207ENST00000553290 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.41■□□□□ 0.38
ACTN1-207ENST00000553290 MTHFSDQ2M296 383 aaKnown RBP17.41■□□□□ 0.38
ACTN1-207ENST00000553290 GNPATO15228 680 aa17.4■□□□□ 0.38
ACTN1-207ENST00000553290 RNMTO43148 476 aaKnown RBP17.4■□□□□ 0.38
ACTN1-207ENST00000553290 PHF14O94880 888 aa17.4■□□□□ 0.38
ACTN1-207ENST00000553290 PPP2R1AP30153 589 aa17.4■□□□□ 0.38
ACTN1-207ENST00000553290 MSL1Q68DK7 614 aa17.4■□□□□ 0.38
ACTN1-207ENST00000553290 AMIGO3Q86WK7 504 aa17.4■□□□□ 0.38
ACTN1-207ENST00000553290 SLC4A9Q96Q91 983 aa17.4■□□□□ 0.38
ACTN1-207ENST00000553290 SLC52A2Q9HAB3 445 aa17.4■□□□□ 0.38
ACTN1-207ENST00000553290 NUDCQ9Y266 331 aa17.4■□□□□ 0.38
ACTN1-207ENST00000553290 RC3H1Q5TC82 1133 aaKnown RBP17.39■□□□□ 0.37
ACTN1-207ENST00000553290 KLHL34Q8N239 644 aa17.39■□□□□ 0.37
ACTN1-207ENST00000553290 LGR6Q9HBX8 967 aa17.39■□□□□ 0.37
ACTN1-207ENST00000553290 VIRMAQ69YN4 1812 aaKnown RBP17.39■□□□□ 0.37
ACTN1-207ENST00000553290 PTCD1O75127 700 aaKnown RBP17.38■□□□□ 0.37
ACTN1-207ENST00000553290 COL5A3P25940 1745 aaPredicted RBP17.38■□□□□ 0.37
ACTN1-207ENST00000553290 ADAMTS7Q9UKP4 1686 aa17.37■□□□□ 0.37
ACTN1-207ENST00000553290 GAS2L2Q8NHY3 880 aa17.37■□□□□ 0.37
ACTN1-207ENST00000553290 RTCBQ9Y3I0 505 aaKnown RBP17.37■□□□□ 0.37
ACTN1-207ENST00000553290 CNTNAP4Q9C0A0 1308 aa17.37■□□□□ 0.37
ACTN1-207ENST00000553290 MRC1P22897 1456 aa17.37■□□□□ 0.37
ACTN1-207ENST00000553290 SMIM5Q71RC9 77 aa17.36■□□□□ 0.37
ACTN1-207ENST00000553290 ADRA2BP18089 450 aa17.35■□□□□ 0.37
ACTN1-207ENST00000553290 TRAPPC3LQ5T215 181 aa17.35■□□□□ 0.37
ACTN1-207ENST00000553290 CICQ96RK0 1608 aaPredicted RBP17.35■□□□□ 0.37
ACTN1-207ENST00000553290 GNAT3A8MTJ3 354 aa17.34■□□□□ 0.37
ACTN1-207ENST00000553290 RPS6KA4O75676 772 aa17.34■□□□□ 0.37
ACTN1-207ENST00000553290 YY1P25490 414 aa17.34■□□□□ 0.37
ACTN1-207ENST00000553290 RSPH6AQ9H0K4 717 aa17.34■□□□□ 0.37
ACTN1-207ENST00000553290 U2AF1L5P0DN76 240 aaPredicted RBP17.33■□□□□ 0.36
ACTN1-207ENST00000553290 PRKAR2BP31323 418 aa17.33■□□□□ 0.36
ACTN1-207ENST00000553290 U2AF1Q01081 240 aaKnown RBP eCLIP17.33■□□□□ 0.36
ACTN1-207ENST00000553290 CD2APQ9Y5K6 639 aa17.33■□□□□ 0.36
ACTN1-207ENST00000553290 MYH14Q7Z406 1995 aaKnown RBP17.33■□□□□ 0.36
ACTN1-207ENST00000553290 FCHSD2O94868 740 aa17.32■□□□□ 0.36
ACTN1-207ENST00000553290 CRKLP46109 303 aaKnown RBP17.32■□□□□ 0.36
ACTN1-207ENST00000553290 GPR162Q16538 588 aa17.32■□□□□ 0.36
ACTN1-207ENST00000553290 NLGN2Q8NFZ4 835 aa17.32■□□□□ 0.36
ACTN1-207ENST00000553290 TJP1Q07157 1748 aa17.32■□□□□ 0.36
ACTN1-207ENST00000553290 SLC39A6Q13433 755 aa17.31■□□□□ 0.36
ACTN1-207ENST00000553290 ARHGEF1Q92888 912 aaKnown RBP17.31■□□□□ 0.36
ACTN1-207ENST00000553290 PHACTR3Q96KR7 559 aa17.31■□□□□ 0.36
ACTN1-207ENST00000553290 RFC4P35249 363 aa17.3■□□□□ 0.36
ACTN1-207ENST00000553290 TEFQ10587 303 aa17.3■□□□□ 0.36
ACTN1-207ENST00000553290 NLGN1Q8N2Q7 840 aa17.3■□□□□ 0.36
ACTN1-207ENST00000553290 IL17REQ8NFR9 667 aa17.3■□□□□ 0.36
ACTN1-207ENST00000553290 DNAJC10Q8IXB1 793 aa17.29■□□□□ 0.36
ACTN1-207ENST00000553290 TTC5Q8N0Z6 440 aa17.29■□□□□ 0.36
ACTN1-207ENST00000553290 VSIG10Q8N0Z9 540 aa17.29■□□□□ 0.36
ACTN1-207ENST00000553290 KCPQ6ZWJ8 1503 aa17.29■□□□□ 0.36
ACTN1-207ENST00000553290 CHD4Q14839 1912 aa17.28■□□□□ 0.36
ACTN1-207ENST00000553290 CCDC87Q9NVE4 849 aa17.28■□□□□ 0.36
ACTN1-207ENST00000553290 UTRNP46939 3433 aa17.28■□□□□ 0.36
ACTN1-207ENST00000553290 CEMIPQ8WUJ3 1361 aa17.28■□□□□ 0.36
ACTN1-207ENST00000553290 MMP10P09238 476 aa17.27■□□□□ 0.36
ACTN1-207ENST00000553290 INTS5Q6P9B9 1019 aaKnown RBP17.27■□□□□ 0.36
ACTN1-207ENST00000553290 PELP1Q8IZL8 1130 aaKnown RBP17.27■□□□□ 0.36
ACTN1-207ENST00000553290 UBR2Q8IWV8 1755 aa17.27■□□□□ 0.35
ACTN1-207ENST00000553290 C4AP0C0L4 1744 aa17.27■□□□□ 0.35
ACTN1-207ENST00000553290 GOLGB1Q14789 3259 aaKnown RBP17.26■□□□□ 0.35
ACTN1-207ENST00000553290 SIPA1L3O60292 1781 aaPredicted RBP17.26■□□□□ 0.35
ACTN1-207ENST00000553290 CYP19A1P11511 503 aaPredicted RBP17.26■□□□□ 0.35
ACTN1-207ENST00000553290 GYS1P13807 737 aa17.26■□□□□ 0.35
ACTN1-207ENST00000553290 RALBP1Q15311 655 aa17.26■□□□□ 0.35
ACTN1-207ENST00000553290 DDX10Q13206 875 aaKnown RBP17.25■□□□□ 0.35
ACTN1-207ENST00000553290 ZNF790Q6PG37 636 aa17.25■□□□□ 0.35
ACTN1-207ENST00000553290 RTF1Q92541 710 aaKnown RBP17.25■□□□□ 0.35
ACTN1-207ENST00000553290 HTATSF1O43719 755 aaKnown RBP17.24■□□□□ 0.35
ACTN1-207ENST00000553290 GRIN3BO60391 1043 aa17.24■□□□□ 0.35
ACTN1-207ENST00000553290 NEFMP07197 916 aa17.24■□□□□ 0.35
ACTN1-207ENST00000553290 SOS1Q07889 1333 aaPredicted RBP17.23■□□□□ 0.35
ACTN1-207ENST00000553290 USP42Q9H9J4 1324 aaKnown RBP17.23■□□□□ 0.35
ACTN1-207ENST00000553290 STARD3NLO95772 234 aa17.23■□□□□ 0.35
ACTN1-207ENST00000553290 TEX13AQ9BXU3 409 aaPredicted RBP17.23■□□□□ 0.35
ACTN1-207ENST00000553290 PARP3Q9Y6F1 533 aa17.23■□□□□ 0.35
ACTN1-207ENST00000553290 BTBD11A6QL63 1104 aa17.22■□□□□ 0.35
ACTN1-207ENST00000553290 ZNF496Q96IT1 587 aaPredicted RBP17.22■□□□□ 0.35
ACTN1-207ENST00000553290 FMNL2Q96PY5 1086 aa17.22■□□□□ 0.35
ACTN1-207ENST00000553290 PNNQ9H307 717 aaKnown RBP17.22■□□□□ 0.35
ACTN1-207ENST00000553290 HEG1Q9ULI3 1381 aa17.22■□□□□ 0.35
ACTN1-207ENST00000553290 ZPR1O75312 459 aa17.21■□□□□ 0.35
ACTN1-207ENST00000553290 YBX3P16989 372 aaKnown RBP eCLIP17.21■□□□□ 0.359e-8■□□□□ 10
ACTN1-207ENST00000553290 SRP68Q9UHB9 627 aaKnown RBP17.21■□□□□ 0.35
ACTN1-207ENST00000553290 ZBTB1Q9Y2K1 713 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms