RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 ATP10DQ9P241 1426 aa16.3■□□□□ 0.2
CKAP4-202ENST00000552828 ADCY9O60503 1353 aa16.3■□□□□ 0.2
CKAP4-202ENST00000552828 GNPATO15228 680 aa16.3■□□□□ 0.2
CKAP4-202ENST00000552828 KDRP35968 1356 aa16.29■□□□□ 0.2
CKAP4-202ENST00000552828 TNNT2P45379 298 aaPredicted RBP16.29■□□□□ 0.2
CKAP4-202ENST00000552828 DCAF5Q96JK2 942 aa16.29■□□□□ 0.2
CKAP4-202ENST00000552828 HSP90AB1P08238 724 aaKnown RBP16.28■□□□□ 0.2
CKAP4-202ENST00000552828 RC3H1Q5TC82 1133 aaKnown RBP16.28■□□□□ 0.2
CKAP4-202ENST00000552828 SLC4A9Q96Q91 983 aa16.28■□□□□ 0.2
CKAP4-202ENST00000552828 PANK3Q9H999 370 aa16.28■□□□□ 0.2
CKAP4-202ENST00000552828 EIF4G2P78344 907 aaKnown RBP eCLIP16.27■□□□□ 0.2
CKAP4-202ENST00000552828 MMP10P09238 476 aa16.26■□□□□ 0.19
CKAP4-202ENST00000552828 ADRA2BP18089 450 aa16.26■□□□□ 0.19
CKAP4-202ENST00000552828 AMOTQ4VCS5 1084 aa16.26■□□□□ 0.19
CKAP4-202ENST00000552828 PLEKHO1Q53GL0 409 aaPredicted RBP16.26■□□□□ 0.19
CKAP4-202ENST00000552828 TRAPPC3LQ5T215 181 aa16.26■□□□□ 0.19
CKAP4-202ENST00000552828 POLR3GLQ9BT43 218 aa16.26■□□□□ 0.19
CKAP4-202ENST00000552828 GPBP1L1Q9HC44 474 aaPredicted RBP16.26■□□□□ 0.19
CKAP4-202ENST00000552828 ZNF831Q5JPB2 1677 aa16.25■□□□□ 0.19
CKAP4-202ENST00000552828 NLGN1Q8N2Q7 840 aa16.25■□□□□ 0.19
CKAP4-202ENST00000552828 RTCBQ9Y3I0 505 aaKnown RBP16.25■□□□□ 0.19
CKAP4-202ENST00000552828 CNTNAP4Q9C0A0 1308 aa16.24■□□□□ 0.19
CKAP4-202ENST00000552828 HSPA5P11021 654 aaKnown RBP16.24■□□□□ 0.19
CKAP4-202ENST00000552828 TGFB2P61812 414 aa16.24■□□□□ 0.19
CKAP4-202ENST00000552828 KDM6AO15550 1401 aaPredicted RBP16.24■□□□□ 0.19
CKAP4-202ENST00000552828 ZNF530Q6P9A1 599 aaPredicted RBP16.23■□□□□ 0.19
CKAP4-202ENST00000552828 ARHGEF1Q92888 912 aaKnown RBP16.23■□□□□ 0.19
CKAP4-202ENST00000552828 RBM42Q9BTD8 480 aaKnown RBP16.23■□□□□ 0.19
CKAP4-202ENST00000552828 RPS6KA4O75676 772 aa16.22■□□□□ 0.19
CKAP4-202ENST00000552828 CABP4P57796 275 aa16.22■□□□□ 0.19
CKAP4-202ENST00000552828 PXDNLA1KZ92 1463 aa16.22■□□□□ 0.19
CKAP4-202ENST00000552828 CICQ96RK0 1608 aaPredicted RBP16.21■□□□□ 0.19
CKAP4-202ENST00000552828 GYS1P13807 737 aa16.21■□□□□ 0.19
CKAP4-202ENST00000552828 MTHFSP49914 203 aa16.21■□□□□ 0.19
CKAP4-202ENST00000552828 MORC1Q86VD1 984 aa16.21■□□□□ 0.19
CKAP4-202ENST00000552828 AEBP1Q8IUX7 1158 aa16.21■□□□□ 0.19
CKAP4-202ENST00000552828 WWC3Q9ULE0 1092 aa16.21■□□□□ 0.19
CKAP4-202ENST00000552828 C10orf71Q711Q0 1435 aa16.2■□□□□ 0.18
CKAP4-202ENST00000552828 IL13P35225 146 aa16.19■□□□□ 0.18
CKAP4-202ENST00000552828 RFC4P35249 363 aa16.19■□□□□ 0.18
CKAP4-202ENST00000552828 NFATC2IPQ8NCF5 419 aa16.19■□□□□ 0.18
CKAP4-202ENST00000552828 KIF13BQ9NQT8 1826 aa16.18■□□□□ 0.18
CKAP4-202ENST00000552828 A0A0G2JLW4 131 aa16.18■□□□□ 0.18
CKAP4-202ENST00000552828 C1orf141Q5JVX7 400 aa16.18■□□□□ 0.18
CKAP4-202ENST00000552828 SULT6B1Q6IMI4 303 aa16.18■□□□□ 0.18
CKAP4-202ENST00000552828 ZNF526Q8TF50 670 aaPredicted RBP16.18■□□□□ 0.18
CKAP4-202ENST00000552828 CCDC87Q9NVE4 849 aa16.18■□□□□ 0.18
CKAP4-202ENST00000552828 COL5A3P25940 1745 aaPredicted RBP16.17■□□□□ 0.18
CKAP4-202ENST00000552828 PTCD1O75127 700 aaKnown RBP16.17■□□□□ 0.18
CKAP4-202ENST00000552828 HSPA6P17066 643 aa16.17■□□□□ 0.18
CKAP4-202ENST00000552828 KNSTRNQ9Y448 316 aa16.17■□□□□ 0.18
CKAP4-202ENST00000552828 PARP3Q9Y6F1 533 aa16.17■□□□□ 0.18
CKAP4-202ENST00000552828 KIAA1551Q9HCM1 1747 aa16.16■□□□□ 0.18
CKAP4-202ENST00000552828 KIF3CO14782 793 aa16.16■□□□□ 0.18
CKAP4-202ENST00000552828 DPEP1P16444 411 aa16.16■□□□□ 0.18
CKAP4-202ENST00000552828 CRKLP46109 303 aaKnown RBP16.16■□□□□ 0.18
CKAP4-202ENST00000552828 AMER1Q5JTC6 1135 aaPredicted RBP16.16■□□□□ 0.18
CKAP4-202ENST00000552828 KCNA3P22001 575 aa16.15■□□□□ 0.18
CKAP4-202ENST00000552828 BCS1LQ9Y276 419 aa16.15■□□□□ 0.18
CKAP4-202ENST00000552828 C4AP0C0L4 1744 aa16.14■□□□□ 0.17
CKAP4-202ENST00000552828 AKAP4Q5JQC9 854 aa16.14■□□□□ 0.17
CKAP4-202ENST00000552828 USP42Q9H9J4 1324 aaKnown RBP16.14■□□□□ 0.17
CKAP4-202ENST00000552828 INTS5Q6P9B9 1019 aaKnown RBP16.13■□□□□ 0.17
CKAP4-202ENST00000552828 MYH14Q7Z406 1995 aaKnown RBP16.13■□□□□ 0.17
CKAP4-202ENST00000552828 FKBP8Q14318 412 aa16.12■□□□□ 0.17
CKAP4-202ENST00000552828 ARHGAP27Q6ZUM4 889 aa16.12■□□□□ 0.17
CKAP4-202ENST00000552828 SLC52A2Q9HAB3 445 aa16.12■□□□□ 0.17
CKAP4-202ENST00000552828 SRP68Q9UHB9 627 aaKnown RBP16.12■□□□□ 0.17
CKAP4-202ENST00000552828 FCHSD2O94868 740 aa16.11■□□□□ 0.17
CKAP4-202ENST00000552828 TM4SF1P30408 202 aa16.11■□□□□ 0.17
CKAP4-202ENST00000552828 DDR1Q08345 913 aa16.11■□□□□ 0.17
CKAP4-202ENST00000552828 PIM2Q9P1W9 311 aa16.11■□□□□ 0.17
CKAP4-202ENST00000552828 N4BP2Q86UW6 1770 aaPredicted RBP16.1■□□□□ 0.17
CKAP4-202ENST00000552828 LGR6Q9HBX8 967 aa16.1■□□□□ 0.17
CKAP4-202ENST00000552828 TJP1Q07157 1748 aa16.09■□□□□ 0.17
CKAP4-202ENST00000552828 PER1O15534 1290 aaPredicted RBP16.09■□□□□ 0.17
CKAP4-202ENST00000552828 IFFO2Q5TF58 517 aa16.09■□□□□ 0.17
CKAP4-202ENST00000552828 MRC1P22897 1456 aa16.09■□□□□ 0.17
CKAP4-202ENST00000552828 POLRMTO00411 1230 aaKnown RBP16.08■□□□□ 0.16
CKAP4-202ENST00000552828 RNMTO43148 476 aaKnown RBP16.08■□□□□ 0.16
CKAP4-202ENST00000552828 TOMM70O94826 608 aa16.08■□□□□ 0.16
CKAP4-202ENST00000552828 CYP19A1P11511 503 aaPredicted RBP16.08■□□□□ 0.16
CKAP4-202ENST00000552828 DALRD3Q5D0E6 543 aaKnown RBP16.08■□□□□ 0.16
CKAP4-202ENST00000552828 DNAJC10Q8IXB1 793 aa16.08■□□□□ 0.16
CKAP4-202ENST00000552828 SOS1Q07889 1333 aaPredicted RBP16.08■□□□□ 0.16
CKAP4-202ENST00000552828 KIF7Q2M1P5 1343 aa16.08■□□□□ 0.16
CKAP4-202ENST00000552828 VSIG10Q8N0Z9 540 aa16.07■□□□□ 0.16
CKAP4-202ENST00000552828 ADAMTS7Q9UKP4 1686 aa16.07■□□□□ 0.16
CKAP4-202ENST00000552828 SCN11AQ9UI33 1791 aa16.07■□□□□ 0.16
CKAP4-202ENST00000552828 BRCA1P38398 1863 aaKnown RBP16.06■□□□□ 0.16
CKAP4-202ENST00000552828 ZPR1O75312 459 aa16.06■□□□□ 0.16
CKAP4-202ENST00000552828 APLP1P51693 650 aa16.06■□□□□ 0.16
CKAP4-202ENST00000552828 MTHFSDQ2M296 383 aaKnown RBP16.06■□□□□ 0.16
CKAP4-202ENST00000552828 C9orf131Q5VYM1 1079 aa16.06■□□□□ 0.16
CKAP4-202ENST00000552828 HMOX1P09601 288 aa16.05■□□□□ 0.16
CKAP4-202ENST00000552828 SLC39A6Q13433 755 aa16.05■□□□□ 0.16
CKAP4-202ENST00000552828 USPL1Q5W0Q7 1092 aa16.05■□□□□ 0.16
CKAP4-202ENST00000552828 NMRK2Q9NPI5 230 aa16.05■□□□□ 0.16
CKAP4-202ENST00000552828 NARFQ9UHQ1 456 aa16.05■□□□□ 0.16
CKAP4-202ENST00000552828 KCPQ6ZWJ8 1503 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms