RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-208ENST00000550662 CYP2U1Q7Z449 544 aa11.08□□□□□ -0.64
NPAS3-208ENST00000550662 OSBPL3Q9H4L5 887 aa11.08□□□□□ -0.64
NPAS3-208ENST00000550662 CYLDQ9NQC7 956 aa11.08□□□□□ -0.64
NPAS3-208ENST00000550662 ZNF358Q9NW07 568 aa11.08□□□□□ -0.64
NPAS3-208ENST00000550662 PGPEP1Q9NXJ5 209 aa11.08□□□□□ -0.64
NPAS3-208ENST00000550662 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.07□□□□□ -0.64
NPAS3-208ENST00000550662 ZNF784Q8NCA9 323 aaPredicted RBP11.07□□□□□ -0.64
NPAS3-208ENST00000550662 PRIMPOLQ96LW4 560 aa11.07□□□□□ -0.64
NPAS3-208ENST00000550662 TMPRSS4Q9NRS4 437 aa11.07□□□□□ -0.64
NPAS3-208ENST00000550662 EMILIN1Q9Y6C2 1016 aa11.07□□□□□ -0.64
NPAS3-208ENST00000550662 WEE1P30291 646 aa11.06□□□□□ -0.64
NPAS3-208ENST00000550662 PPP1R26Q5T8A7 1209 aaPredicted RBP11.06□□□□□ -0.64
NPAS3-208ENST00000550662 TSEN2Q8NCE0 465 aaKnown RBP11.06□□□□□ -0.64
NPAS3-208ENST00000550662 TMEM229AB2RXF0 380 aa11.05□□□□□ -0.64
NPAS3-208ENST00000550662 GNRH1P01148 92 aa11.05□□□□□ -0.64
NPAS3-208ENST00000550662 GDF10P55107 478 aa11.05□□□□□ -0.64
NPAS3-208ENST00000550662 ESCO1Q5FWF5 840 aa11.05□□□□□ -0.64
NPAS3-208ENST00000550662 TREML4Q6UXN2 200 aa11.05□□□□□ -0.64
NPAS3-208ENST00000550662 LILRA1O75019 489 aa11.04□□□□□ -0.64
NPAS3-208ENST00000550662 HPS1Q92902 700 aa11.04□□□□□ -0.64
NPAS3-208ENST00000550662 EGFL7Q9UHF1 273 aa11.04□□□□□ -0.64
NPAS3-208ENST00000550662 SOWAHDA6NJG2 315 aa11.03□□□□□ -0.64
NPAS3-208ENST00000550662 C11orf95C9JLR9 678 aaPredicted RBP11.03□□□□□ -0.64
NPAS3-208ENST00000550662 INHAP05111 366 aa11.03□□□□□ -0.64
NPAS3-208ENST00000550662 IGFBP4P22692 258 aa11.03□□□□□ -0.64
NPAS3-208ENST00000550662 SCNN1DP51172 638 aa11.03□□□□□ -0.64
NPAS3-208ENST00000550662 GAS2L2Q8NHY3 880 aa11.03□□□□□ -0.64
NPAS3-208ENST00000550662 PTCD1O75127 700 aaKnown RBP11.02□□□□□ -0.65
NPAS3-208ENST00000550662 FOXO3O43524 673 aa11.01□□□□□ -0.65
NPAS3-208ENST00000550662 SERPINB4P48594 390 aa11.01□□□□□ -0.65
NPAS3-208ENST00000550662 COL26A1Q96A83 441 aa11.01□□□□□ -0.65
NPAS3-208ENST00000550662 SLC4A9Q96Q91 983 aa11.01□□□□□ -0.65
NPAS3-208ENST00000550662 ATP13A2Q9NQ11 1180 aa11.01□□□□□ -0.65
NPAS3-208ENST00000550662 NR3C2P08235 984 aa11□□□□□ -0.65
NPAS3-208ENST00000550662 ETNK1Q9HBU6 452 aa11□□□□□ -0.65
NPAS3-208ENST00000550662 WASF2Q9Y6W5 498 aa11□□□□□ -0.65
NPAS3-208ENST00000550662 ALDH1A1P00352 501 aa10.99□□□□□ -0.65
NPAS3-208ENST00000550662 NNTQ13423 1086 aa10.98□□□□□ -0.65
NPAS3-208ENST00000550662 ERCC3P19447 782 aa10.97□□□□□ -0.65
NPAS3-208ENST00000550662 ADD1P35611 737 aaKnown RBP10.97□□□□□ -0.65
NPAS3-208ENST00000550662 EPHA4P54764 986 aa10.97□□□□□ -0.65
NPAS3-208ENST00000550662 FKBP5Q13451 457 aaPredicted RBP10.97□□□□□ -0.65
NPAS3-208ENST00000550662 TNS4Q8IZW8 715 aa10.97□□□□□ -0.65
NPAS3-208ENST00000550662 SERTAD1Q9UHV2 236 aa10.97□□□□□ -0.65
NPAS3-208ENST00000550662 AMOTL2Q9Y2J4 779 aa10.97□□□□□ -0.65
NPAS3-208ENST00000550662 ATAD2Q6PL18 1390 aa10.96□□□□□ -0.65
NPAS3-208ENST00000550662 LGR5O75473 907 aa10.96□□□□□ -0.65
NPAS3-208ENST00000550662 ABL1P00519 1130 aa10.96□□□□□ -0.65
NPAS3-208ENST00000550662 ADH1AP07327 375 aa10.96□□□□□ -0.65
NPAS3-208ENST00000550662 SCNN1AP37088 669 aa10.96□□□□□ -0.65
NPAS3-208ENST00000550662 SCG3Q8WXD2 468 aaKnown RBP10.96□□□□□ -0.65
NPAS3-208ENST00000550662 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.96□□□□□ -0.65
NPAS3-208ENST00000550662 A6NJY4 79 aa10.95□□□□□ -0.66
NPAS3-208ENST00000550662 ICMTO60725 284 aa10.95□□□□□ -0.66
NPAS3-208ENST00000550662 SNRPBP14678 240 aaKnown RBP10.95□□□□□ -0.66
NPAS3-208ENST00000550662 SMTNP53814 917 aa10.95□□□□□ -0.66
NPAS3-208ENST00000550662 SF3B2Q13435 895 aaKnown RBP10.95□□□□□ -0.66
NPAS3-208ENST00000550662 STAG2Q8N3U4 1231 aa10.95□□□□□ -0.66
NPAS3-208ENST00000550662 VTI1AQ96AJ9 217 aa10.95□□□□□ -0.66
NPAS3-208ENST00000550662 XAGE2Q96GT9 111 aa10.95□□□□□ -0.66
NPAS3-208ENST00000550662 STAU1O95793 577 aaKnown RBP10.94□□□□□ -0.66
NPAS3-208ENST00000550662 MTFR1Q15390 333 aa10.94□□□□□ -0.66
NPAS3-208ENST00000550662 GTF3C2Q8WUA4 911 aaPredicted RBP10.94□□□□□ -0.66
NPAS3-208ENST00000550662 TRIM47Q96LD4 638 aa10.94□□□□□ -0.66
NPAS3-208ENST00000550662 MKNK1Q9BUB5 465 aa10.94□□□□□ -0.66
NPAS3-208ENST00000550662 ARHGEF10LQ9HCE6 1279 aa10.94□□□□□ -0.66
NPAS3-208ENST00000550662 SCHIP1Q9P0W5 487 aaPredicted RBP10.94□□□□□ -0.66
NPAS3-208ENST00000550662 BIN2Q9UBW5 565 aaPredicted RBP10.94□□□□□ -0.66
NPAS3-208ENST00000550662 FOXK2Q01167 660 aa10.93□□□□□ -0.66
NPAS3-208ENST00000550662 NFX1Q12986 1120 aaKnown RBP10.93□□□□□ -0.66
NPAS3-208ENST00000550662 FOXD4L5Q5VV16 416 aaPredicted RBP10.93□□□□□ -0.66
NPAS3-208ENST00000550662 GLYCTKQ8IVS8 523 aa10.93□□□□□ -0.66
NPAS3-208ENST00000550662 FOXD4L4Q8WXT5 416 aaPredicted RBP10.93□□□□□ -0.66
NPAS3-208ENST00000550662 TSPAN10Q9H1Z9 355 aaPredicted RBP10.93□□□□□ -0.66
NPAS3-208ENST00000550662 SEPT3Q9UH03 358 aa10.93□□□□□ -0.66
NPAS3-208ENST00000550662 H3BRB1 525 aa10.92□□□□□ -0.66
NPAS3-208ENST00000550662 C21orf2O43822 256 aa10.92□□□□□ -0.66
NPAS3-208ENST00000550662 PPP1R12BO60237 982 aaPredicted RBP10.92□□□□□ -0.66
NPAS3-208ENST00000550662 WFS1O76024 890 aa10.92□□□□□ -0.66
NPAS3-208ENST00000550662 FKBP4Q02790 459 aaKnown RBP eCLIP10.92□□□□□ -0.66
NPAS3-208ENST00000550662 Q6ZVU0 165 aa10.92□□□□□ -0.66
NPAS3-208ENST00000550662 ESYT1Q9BSJ8 1104 aa10.92□□□□□ -0.66
NPAS3-208ENST00000550662 TUT1Q9H6E5 874 aaKnown RBP10.92□□□□□ -0.66
NPAS3-208ENST00000550662 SENP2Q9HC62 589 aa10.92□□□□□ -0.66
NPAS3-208ENST00000550662 CDK2AP1O14519 115 aa10.91□□□□□ -0.66
NPAS3-208ENST00000550662 CLN3Q13286 438 aa10.91□□□□□ -0.66
NPAS3-208ENST00000550662 ZNF211Q13398 564 aaPredicted RBP10.91□□□□□ -0.66
NPAS3-208ENST00000550662 NBPF15Q8N660 670 aa10.91□□□□□ -0.66
NPAS3-208ENST00000550662 CNKSR1Q969H4 720 aa10.91□□□□□ -0.66
NPAS3-208ENST00000550662 PURBQ96QR8 312 aaKnown RBP10.91□□□□□ -0.66
NPAS3-208ENST00000550662 RAB6BQ9NRW1 208 aa10.91□□□□□ -0.66
NPAS3-208ENST00000550662 CHMP3Q9Y3E7 222 aa10.91□□□□□ -0.66
NPAS3-208ENST00000550662 IL2RAP01589 272 aa10.9□□□□□ -0.66
NPAS3-208ENST00000550662 PTGIRP43119 386 aa10.9□□□□□ -0.66
NPAS3-208ENST00000550662 MARSP56192 900 aaKnown RBP10.9□□□□□ -0.66
NPAS3-208ENST00000550662 PSMA6P60900 246 aaKnown RBP10.9□□□□□ -0.66
NPAS3-208ENST00000550662 TLR1Q15399 786 aa10.9□□□□□ -0.66
NPAS3-208ENST00000550662 SLC9A9Q8IVB4 645 aa10.9□□□□□ -0.66
NPAS3-208ENST00000550662 HELQQ8TDG4 1101 aa10.9□□□□□ -0.66
NPAS3-208ENST00000550662 A0A1W2PRU2 124 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms