RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 GNPATO15228 680 aa16.03■□□□□ 0.16
SMARCD1-208ENST00000550280 ATP6V1AP38606 617 aa16.03■□□□□ 0.16
SMARCD1-208ENST00000550280 TIMELESSQ9UNS1 1208 aa16.03■□□□□ 0.16
SMARCD1-208ENST00000550280 PXDNLA1KZ92 1463 aa16.01■□□□□ 0.15
SMARCD1-208ENST00000550280 PLEKHG2Q9H7P9 1386 aa16■□□□□ 0.15
SMARCD1-208ENST00000550280 HMGB2P26583 209 aaKnown RBP16■□□□□ 0.15
SMARCD1-208ENST00000550280 POLR3GLQ9BT43 218 aa16■□□□□ 0.15
SMARCD1-208ENST00000550280 CICQ96RK0 1608 aaPredicted RBP16■□□□□ 0.15
SMARCD1-208ENST00000550280 MMP10P09238 476 aa15.99■□□□□ 0.15
SMARCD1-208ENST00000550280 HSPA5P11021 654 aaKnown RBP15.99■□□□□ 0.15
SMARCD1-208ENST00000550280 AEBP1Q8IUX7 1158 aa15.99■□□□□ 0.15
SMARCD1-208ENST00000550280 PANK3Q9H999 370 aa15.99■□□□□ 0.15
SMARCD1-208ENST00000550280 ZNF831Q5JPB2 1677 aa15.99■□□□□ 0.15
SMARCD1-208ENST00000550280 COL5A3P25940 1745 aaPredicted RBP15.98■□□□□ 0.15
SMARCD1-208ENST00000550280 ZNF526Q8TF50 670 aaPredicted RBP15.98■□□□□ 0.15
SMARCD1-208ENST00000550280 C10orf71Q711Q0 1435 aa15.97■□□□□ 0.15
SMARCD1-208ENST00000550280 KIF13BQ9NQT8 1826 aa15.97■□□□□ 0.15
SMARCD1-208ENST00000550280 ERVV-2B6SEH9 535 aa15.97■□□□□ 0.15
SMARCD1-208ENST00000550280 ARHGEF1Q92888 912 aaKnown RBP15.97■□□□□ 0.15
SMARCD1-208ENST00000550280 CLSPNQ9HAW4 1339 aa15.96■□□□□ 0.15
SMARCD1-208ENST00000550280 DCAF5Q96JK2 942 aa15.96■□□□□ 0.15
SMARCD1-208ENST00000550280 GPBP1L1Q9HC44 474 aaPredicted RBP15.96■□□□□ 0.15
SMARCD1-208ENST00000550280 GYS1P13807 737 aa15.95■□□□□ 0.14
SMARCD1-208ENST00000550280 ZNF530Q6P9A1 599 aaPredicted RBP15.95■□□□□ 0.14
SMARCD1-208ENST00000550280 RBM42Q9BTD8 480 aaKnown RBP15.95■□□□□ 0.14
SMARCD1-208ENST00000550280 MYH14Q7Z406 1995 aaKnown RBP15.95■□□□□ 0.14
SMARCD1-208ENST00000550280 CNTNAP4Q9C0A0 1308 aa15.94■□□□□ 0.14
SMARCD1-208ENST00000550280 KIF3CO14782 793 aa15.94■□□□□ 0.14
SMARCD1-208ENST00000550280 RC3H1Q5TC82 1133 aaKnown RBP15.94■□□□□ 0.14
SMARCD1-208ENST00000550280 RTCBQ9Y3I0 505 aaKnown RBP15.94■□□□□ 0.14
SMARCD1-208ENST00000550280 N4BP2Q86UW6 1770 aaPredicted RBP15.93■□□□□ 0.14
SMARCD1-208ENST00000550280 A0A0G2JLW4 131 aa15.93■□□□□ 0.14
SMARCD1-208ENST00000550280 RPS6KA4O75676 772 aa15.93■□□□□ 0.14
SMARCD1-208ENST00000550280 EIF4G2P78344 907 aaKnown RBP eCLIP15.93■□□□□ 0.14
SMARCD1-208ENST00000550280 PLEKHO1Q53GL0 409 aaPredicted RBP15.93■□□□□ 0.14
SMARCD1-208ENST00000550280 TRAPPC3LQ5T215 181 aa15.93■□□□□ 0.14
SMARCD1-208ENST00000550280 PCGF6Q9BYE7 350 aa15.93■□□□□ 0.14
SMARCD1-208ENST00000550280 C4AP0C0L4 1744 aa15.93■□□□□ 0.14
SMARCD1-208ENST00000550280 KCNA3P22001 575 aa15.92■□□□□ 0.14
SMARCD1-208ENST00000550280 TJP1Q07157 1748 aa15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 HSP90AB1P08238 724 aaKnown RBP15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 DPEP1P16444 411 aa15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 ADRA2BP18089 450 aa15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 IL13P35225 146 aa15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 CABP4P57796 275 aa15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 TGFB2P61812 414 aa15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 NLGN1Q8N2Q7 840 aa15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 ADAMTS7Q9UKP4 1686 aa15.91■□□□□ 0.14
SMARCD1-208ENST00000550280 PTCD1O75127 700 aaKnown RBP15.9■□□□□ 0.14
SMARCD1-208ENST00000550280 HSPA6P17066 643 aa15.9■□□□□ 0.14
SMARCD1-208ENST00000550280 CRKLP46109 303 aaKnown RBP15.9■□□□□ 0.14
SMARCD1-208ENST00000550280 AMOTQ4VCS5 1084 aa15.9■□□□□ 0.14
SMARCD1-208ENST00000550280 NFATC2IPQ8NCF5 419 aa15.9■□□□□ 0.14
SMARCD1-208ENST00000550280 SRP68Q9UHB9 627 aaKnown RBP15.9■□□□□ 0.14
SMARCD1-208ENST00000550280 BCS1LQ9Y276 419 aa15.9■□□□□ 0.14
SMARCD1-208ENST00000550280 MTHFSP49914 203 aa15.89■□□□□ 0.13
SMARCD1-208ENST00000550280 DDR1Q08345 913 aa15.89■□□□□ 0.13
SMARCD1-208ENST00000550280 SULT6B1Q6IMI4 303 aa15.89■□□□□ 0.13
SMARCD1-208ENST00000550280 MORC1Q86VD1 984 aa15.89■□□□□ 0.13
SMARCD1-208ENST00000550280 BRCA1P38398 1863 aaKnown RBP15.88■□□□□ 0.13
SMARCD1-208ENST00000550280 FKBP8Q14318 412 aa15.88■□□□□ 0.13
SMARCD1-208ENST00000550280 AMER1Q5JTC6 1135 aaPredicted RBP15.88■□□□□ 0.13
SMARCD1-208ENST00000550280 INTS5Q6P9B9 1019 aaKnown RBP15.88■□□□□ 0.13
SMARCD1-208ENST00000550280 RFC4P35249 363 aa15.87■□□□□ 0.13
SMARCD1-208ENST00000550280 USP42Q9H9J4 1324 aaKnown RBP15.87■□□□□ 0.13
SMARCD1-208ENST00000550280 LGR6Q9HBX8 967 aa15.86■□□□□ 0.13
SMARCD1-208ENST00000550280 CCDC87Q9NVE4 849 aa15.86■□□□□ 0.13
SMARCD1-208ENST00000550280 MRC1P22897 1456 aa15.85■□□□□ 0.13
SMARCD1-208ENST00000550280 SCN11AQ9UI33 1791 aa15.85■□□□□ 0.13
SMARCD1-208ENST00000550280 C1orf141Q5JVX7 400 aa15.85■□□□□ 0.13
SMARCD1-208ENST00000550280 PARP3Q9Y6F1 533 aa15.85■□□□□ 0.13
SMARCD1-208ENST00000550280 FCHSD2O94868 740 aa15.84■□□□□ 0.13
SMARCD1-208ENST00000550280 IFFO2Q5TF58 517 aa15.84■□□□□ 0.13
SMARCD1-208ENST00000550280 ARHGAP27Q6ZUM4 889 aa15.84■□□□□ 0.13
SMARCD1-208ENST00000550280 DNAJC10Q8IXB1 793 aa15.84■□□□□ 0.13
SMARCD1-208ENST00000550280 NMRK2Q9NPI5 230 aa15.84■□□□□ 0.13
SMARCD1-208ENST00000550280 KCPQ6ZWJ8 1503 aa15.84■□□□□ 0.13
SMARCD1-208ENST00000550280 POLRMTO00411 1230 aaKnown RBP15.83■□□□□ 0.12
SMARCD1-208ENST00000550280 TM4SF1P30408 202 aa15.83■□□□□ 0.12
SMARCD1-208ENST00000550280 SLC52A2Q9HAB3 445 aa15.83■□□□□ 0.12
SMARCD1-208ENST00000550280 CHRNA5P30532 468 aa15.82■□□□□ 0.12
SMARCD1-208ENST00000550280 SLC39A6Q13433 755 aa15.82■□□□□ 0.12
SMARCD1-208ENST00000550280 AKAP4Q5JQC9 854 aa15.82■□□□□ 0.12
SMARCD1-208ENST00000550280 KNSTRNQ9Y448 316 aa15.82■□□□□ 0.12
SMARCD1-208ENST00000550280 SOS1Q07889 1333 aaPredicted RBP15.82■□□□□ 0.12
SMARCD1-208ENST00000550280 KIF7Q2M1P5 1343 aa15.82■□□□□ 0.12
SMARCD1-208ENST00000550280 PER1O15534 1290 aaPredicted RBP15.81■□□□□ 0.12
SMARCD1-208ENST00000550280 RNMTO43148 476 aaKnown RBP15.81■□□□□ 0.12
SMARCD1-208ENST00000550280 HMOX1P09601 288 aa15.81■□□□□ 0.12
SMARCD1-208ENST00000550280 CYP19A1P11511 503 aaPredicted RBP15.81■□□□□ 0.12
SMARCD1-208ENST00000550280 C9orf131Q5VYM1 1079 aa15.81■□□□□ 0.12
SMARCD1-208ENST00000550280 ARFGEF1Q9Y6D6 1849 aa15.8■□□□□ 0.12
SMARCD1-208ENST00000550280 USPL1Q5W0Q7 1092 aa15.8■□□□□ 0.12
SMARCD1-208ENST00000550280 BCL2L12Q9HB09 334 aa15.8■□□□□ 0.12
SMARCD1-208ENST00000550280 MTHFSDQ2M296 383 aaKnown RBP15.79■□□□□ 0.12
SMARCD1-208ENST00000550280 DNAJC5GQ8N7S2 189 aa15.79■□□□□ 0.12
SMARCD1-208ENST00000550280 PIM2Q9P1W9 311 aa15.79■□□□□ 0.12
SMARCD1-208ENST00000550280 ZBTB1Q9Y2K1 713 aa15.79■□□□□ 0.12
SMARCD1-208ENST00000550280 COL3A1P02461 1466 aaPredicted RBP15.78■□□□□ 0.12
SMARCD1-208ENST00000550280 TOMM70O94826 608 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms