RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 COL3A1P02461 1466 aaPredicted RBP9.71□□□□□ -0.86
PTCH1-219ENST00000549678 ERVV-2B6SEH9 535 aa9.7□□□□□ -0.86
PTCH1-219ENST00000549678 KCNQ4P56696 695 aa9.7□□□□□ -0.86
PTCH1-219ENST00000549678 COL23A1Q86Y22 540 aaPredicted RBP9.7□□□□□ -0.86
PTCH1-219ENST00000549678 AK7Q96M32 723 aa9.7□□□□□ -0.86
PTCH1-219ENST00000549678 KDRP35968 1356 aa9.7□□□□□ -0.86
PTCH1-219ENST00000549678 C5P01031 1676 aa9.7□□□□□ -0.86
PTCH1-219ENST00000549678 TUBGCP6Q96RT7 1819 aa9.7□□□□□ -0.86
PTCH1-219ENST00000549678 CHD4Q14839 1912 aa9.7□□□□□ -0.86
PTCH1-219ENST00000549678 LOC102724428A0A0B4J2F2 783 aa9.69□□□□□ -0.86
PTCH1-219ENST00000549678 MSH5O43196 834 aa9.69□□□□□ -0.86
PTCH1-219ENST00000549678 SSFA2P28290 1259 aa9.69□□□□□ -0.86
PTCH1-219ENST00000549678 SIK1P57059 783 aa9.69□□□□□ -0.86
PTCH1-219ENST00000549678 CABP4P57796 275 aa9.69□□□□□ -0.86
PTCH1-219ENST00000549678 DCAF5Q96JK2 942 aa9.69□□□□□ -0.86
PTCH1-219ENST00000549678 SCN11AQ9UI33 1791 aa9.69□□□□□ -0.86
PTCH1-219ENST00000549678 TAF1LQ8IZX4 1826 aa9.68□□□□□ -0.86
PTCH1-219ENST00000549678 MYBBP1AQ9BQG0 1328 aaKnown RBP9.68□□□□□ -0.86
PTCH1-219ENST00000549678 PRKAR2BP31323 418 aa9.68□□□□□ -0.86
PTCH1-219ENST00000549678 AKAP4Q5JQC9 854 aa9.68□□□□□ -0.86
PTCH1-219ENST00000549678 GAS2L2Q8NHY3 880 aa9.68□□□□□ -0.86
PTCH1-219ENST00000549678 CD2APQ9Y5K6 639 aa9.68□□□□□ -0.86
PTCH1-219ENST00000549678 MAPK8IP3Q9UPT6 1336 aa9.67□□□□□ -0.86
PTCH1-219ENST00000549678 GRIN3BO60391 1043 aa9.67□□□□□ -0.86
PTCH1-219ENST00000549678 GPR162Q16538 588 aa9.67□□□□□ -0.86
PTCH1-219ENST00000549678 C4BP0C0L5 1744 aa9.67□□□□□ -0.86
PTCH1-219ENST00000549678 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.66□□□□□ -0.86
PTCH1-219ENST00000549678 ATP6V1AP38606 617 aa9.66□□□□□ -0.86
PTCH1-219ENST00000549678 WDR43Q15061 677 aaKnown RBP eCLIP9.66□□□□□ -0.86
PTCH1-219ENST00000549678 MTHFSDQ2M296 383 aaKnown RBP9.66□□□□□ -0.86
PTCH1-219ENST00000549678 KLHL34Q8N239 644 aa9.66□□□□□ -0.86
PTCH1-219ENST00000549678 RBM42Q9BTD8 480 aaKnown RBP9.66□□□□□ -0.86
PTCH1-219ENST00000549678 PNNQ9H307 717 aaKnown RBP9.66□□□□□ -0.86
PTCH1-219ENST00000549678 ATG3Q9NT62 314 aa9.66□□□□□ -0.86
PTCH1-219ENST00000549678 ASAP1Q9ULH1 1129 aa9.66□□□□□ -0.86
PTCH1-219ENST00000549678 KDM6AO15550 1401 aaPredicted RBP9.65□□□□□ -0.86
PTCH1-219ENST00000549678 ADRA2BP18089 450 aa9.65□□□□□ -0.86
PTCH1-219ENST00000549678 TEFQ10587 303 aa9.65□□□□□ -0.86
PTCH1-219ENST00000549678 RC3H1Q5TC82 1133 aaKnown RBP9.65□□□□□ -0.86
PTCH1-219ENST00000549678 LINC00116Q8NCU8 138 aa9.65□□□□□ -0.86
PTCH1-219ENST00000549678 RTF1Q92541 710 aaKnown RBP9.65□□□□□ -0.86
PTCH1-219ENST00000549678 RSPH6AQ9H0K4 717 aa9.65□□□□□ -0.86
PTCH1-219ENST00000549678 UBR3Q6ZT12 1888 aa9.65□□□□□ -0.86
PTCH1-219ENST00000549678 ZNF831Q5JPB2 1677 aa9.64□□□□□ -0.87
PTCH1-219ENST00000549678 GNAT3A8MTJ3 354 aa9.64□□□□□ -0.87
PTCH1-219ENST00000549678 ANP32CO43423 234 aa9.64□□□□□ -0.87
PTCH1-219ENST00000549678 FCHSD2O94868 740 aa9.64□□□□□ -0.87
PTCH1-219ENST00000549678 ZNF784Q8NCA9 323 aaPredicted RBP9.64□□□□□ -0.87
PTCH1-219ENST00000549678 CNTNAP4Q9C0A0 1308 aa9.63□□□□□ -0.87
PTCH1-219ENST00000549678 DLG5Q8TDM6 1919 aa9.63□□□□□ -0.87
PTCH1-219ENST00000549678 GNPATO15228 680 aa9.63□□□□□ -0.87
PTCH1-219ENST00000549678 RNMTO43148 476 aaKnown RBP9.63□□□□□ -0.87
PTCH1-219ENST00000549678 ITPK1Q13572 414 aa9.63□□□□□ -0.87
PTCH1-219ENST00000549678 MSL1Q68DK7 614 aa9.63□□□□□ -0.87
PTCH1-219ENST00000549678 TTC5Q8N0Z6 440 aa9.63□□□□□ -0.87
PTCH1-219ENST00000549678 NFATC2IPQ8NCF5 419 aa9.63□□□□□ -0.87
PTCH1-219ENST00000549678 NLGN2Q8NFZ4 835 aa9.63□□□□□ -0.87
PTCH1-219ENST00000549678 PRKRIP1Q9H875 184 aaPredicted RBP9.63□□□□□ -0.87
PTCH1-219ENST00000549678 RTCBQ9Y3I0 505 aaKnown RBP9.63□□□□□ -0.87
PTCH1-219ENST00000549678 PTCD1O75127 700 aaKnown RBP9.62□□□□□ -0.87
PTCH1-219ENST00000549678 PHF14O94880 888 aa9.62□□□□□ -0.87
PTCH1-219ENST00000549678 TRAPPC3LQ5T215 181 aa9.62□□□□□ -0.87
PTCH1-219ENST00000549678 NLGN1Q8N2Q7 840 aa9.62□□□□□ -0.87
PTCH1-219ENST00000549678 SLC52A2Q9HAB3 445 aa9.62□□□□□ -0.87
PTCH1-219ENST00000549678 AMIGO3Q86WK7 504 aa9.61□□□□□ -0.87
PTCH1-219ENST00000549678 PELP1Q8IZL8 1130 aaKnown RBP9.61□□□□□ -0.87
PTCH1-219ENST00000549678 LGR6Q9HBX8 967 aa9.61□□□□□ -0.87
PTCH1-219ENST00000549678 CEP350Q5VT06 3117 aa9.6□□□□□ -0.87
PTCH1-219ENST00000549678 MRC1P22897 1456 aa9.6□□□□□ -0.87
PTCH1-219ENST00000549678 RPS6KA4O75676 772 aa9.6□□□□□ -0.87
PTCH1-219ENST00000549678 PHACTR3Q96KR7 559 aa9.6□□□□□ -0.87
PTCH1-219ENST00000549678 SLC4A9Q96Q91 983 aa9.6□□□□□ -0.87
PTCH1-219ENST00000549678 ADAMTS7Q9UKP4 1686 aa9.6□□□□□ -0.87
PTCH1-219ENST00000549678 COL5A3P25940 1745 aaPredicted RBP9.59□□□□□ -0.87
PTCH1-219ENST00000549678 YBX3P16989 372 aaKnown RBP eCLIP9.59□□□□□ -0.87
PTCH1-219ENST00000549678 RFC4P35249 363 aa9.59□□□□□ -0.87
PTCH1-219ENST00000549678 SLC39A6Q13433 755 aa9.59□□□□□ -0.87
PTCH1-219ENST00000549678 SIPA1L3O60292 1781 aaPredicted RBP9.59□□□□□ -0.87
PTCH1-219ENST00000549678 CICQ96RK0 1608 aaPredicted RBP9.58□□□□□ -0.88
PTCH1-219ENST00000549678 BTBD11A6QL63 1104 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 MMP10P09238 476 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 TGFB2P61812 414 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 LMOD3Q0VAK6 560 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 NEUROD2Q15784 382 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 SMIM5Q71RC9 77 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 MCM10Q7L590 875 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 CCDC146Q8IYE0 955 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 TJP1Q07157 1748 aa9.58□□□□□ -0.88
PTCH1-219ENST00000549678 MYH14Q7Z406 1995 aaKnown RBP9.57□□□□□ -0.88
PTCH1-219ENST00000549678 DCTN1Q14203 1278 aa9.57□□□□□ -0.88
PTCH1-219ENST00000549678 NFE2L2Q16236 605 aa9.57□□□□□ -0.88
PTCH1-219ENST00000549678 NPM2Q86SE8 214 aaKnown RBP9.57□□□□□ -0.88
PTCH1-219ENST00000549678 VSIG10Q8N0Z9 540 aa9.57□□□□□ -0.88
PTCH1-219ENST00000549678 ARHGEF1Q92888 912 aaKnown RBP9.57□□□□□ -0.88
PTCH1-219ENST00000549678 MRS2Q9HD23 443 aa9.57□□□□□ -0.88
PTCH1-219ENST00000549678 CCDC87Q9NVE4 849 aa9.57□□□□□ -0.88
PTCH1-219ENST00000549678 UBR2Q8IWV8 1755 aa9.57□□□□□ -0.88
PTCH1-219ENST00000549678 HTATSF1O43719 755 aaKnown RBP9.56□□□□□ -0.88
PTCH1-219ENST00000549678 GYS1P13807 737 aa9.56□□□□□ -0.88
PTCH1-219ENST00000549678 CRKLP46109 303 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms