RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 CABP4P57796 275 aa19.81■□□□□ 0.76
LINC00661-203ENST00000549131 ARXQ96QS3 562 aa19.81■□□□□ 0.76
LINC00661-203ENST00000549131 FHDC1Q9C0D6 1143 aaPredicted RBP19.81■□□□□ 0.76
LINC00661-203ENST00000549131 ATG3Q9NT62 314 aa19.81■□□□□ 0.76
LINC00661-203ENST00000549131 TJP1Q07157 1748 aa19.81■□□□□ 0.76
LINC00661-203ENST00000549131 U2SURPO15042 1029 aaKnown RBP19.8■□□□□ 0.76
LINC00661-203ENST00000549131 ATP6V1AP38606 617 aa19.8■□□□□ 0.76
LINC00661-203ENST00000549131 COL23A1Q86Y22 540 aaPredicted RBP19.8■□□□□ 0.76
LINC00661-203ENST00000549131 CICQ96RK0 1608 aaPredicted RBP19.8■□□□□ 0.76
LINC00661-203ENST00000549131 MRC1P22897 1456 aa19.79■□□□□ 0.76
LINC00661-203ENST00000549131 LINC00116Q8NCU8 138 aa19.79■□□□□ 0.76
LINC00661-203ENST00000549131 DCAF8L1A6NGE4 600 aa19.78■□□□□ 0.76
LINC00661-203ENST00000549131 PHF14O94880 888 aa19.78■□□□□ 0.76
LINC00661-203ENST00000549131 AKAP4Q5JQC9 854 aa19.78■□□□□ 0.76
LINC00661-203ENST00000549131 KLHL34Q8N239 644 aa19.78■□□□□ 0.76
LINC00661-203ENST00000549131 CFAP53Q96M91 514 aa19.78■□□□□ 0.76
LINC00661-203ENST00000549131 RBM42Q9BTD8 480 aaKnown RBP19.78■□□□□ 0.76
LINC00661-203ENST00000549131 C4AP0C0L4 1744 aa19.77■□□□□ 0.76
LINC00661-203ENST00000549131 ITPK1Q13572 414 aa19.77■□□□□ 0.76
LINC00661-203ENST00000549131 MSL1Q68DK7 614 aa19.77■□□□□ 0.76
LINC00661-203ENST00000549131 FLAD1Q8NFF5 587 aa19.77■□□□□ 0.76
LINC00661-203ENST00000549131 MYH14Q7Z406 1995 aaKnown RBP19.76■□□□□ 0.75
LINC00661-203ENST00000549131 MAP3K5Q99683 1374 aa19.76■□□□□ 0.75
LINC00661-203ENST00000549131 SYT17Q9BSW7 474 aa19.76■□□□□ 0.75
LINC00661-203ENST00000549131 SIPA1L3O60292 1781 aaPredicted RBP19.75■□□□□ 0.75
LINC00661-203ENST00000549131 GNPATO15228 680 aa19.75■□□□□ 0.75
LINC00661-203ENST00000549131 PPP2R1AP30153 589 aa19.75■□□□□ 0.75
LINC00661-203ENST00000549131 UBR2Q8IWV8 1755 aa19.75■□□□□ 0.75
LINC00661-203ENST00000549131 MTHFSDQ2M296 383 aaKnown RBP19.74■□□□□ 0.75
LINC00661-203ENST00000549131 AMIGO3Q86WK7 504 aa19.74■□□□□ 0.75
LINC00661-203ENST00000549131 NFATC2IPQ8NCF5 419 aa19.74■□□□□ 0.75
LINC00661-203ENST00000549131 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.73■□□□□ 0.75
LINC00661-203ENST00000549131 SSFA2P28290 1259 aa19.73■□□□□ 0.75
LINC00661-203ENST00000549131 SMIM5Q71RC9 77 aa19.73■□□□□ 0.75
LINC00661-203ENST00000549131 PTCD1O75127 700 aaKnown RBP19.72■□□□□ 0.75
LINC00661-203ENST00000549131 SLC4A9Q96Q91 983 aa19.72■□□□□ 0.75
LINC00661-203ENST00000549131 CHD4Q14839 1912 aa19.72■□□□□ 0.75
LINC00661-203ENST00000549131 SLC52A2Q9HAB3 445 aa19.71■□□□□ 0.75
LINC00661-203ENST00000549131 LGR6Q9HBX8 967 aa19.71■□□□□ 0.75
LINC00661-203ENST00000549131 RNMTO43148 476 aaKnown RBP19.7■□□□□ 0.74
LINC00661-203ENST00000549131 NUDCQ9Y266 331 aa19.7■□□□□ 0.74
LINC00661-203ENST00000549131 KCPQ6ZWJ8 1503 aa19.69■□□□□ 0.74
LINC00661-203ENST00000549131 CNTNAP4Q9C0A0 1308 aa19.69■□□□□ 0.74
LINC00661-203ENST00000549131 PRKAR2BP31323 418 aa19.68■□□□□ 0.74
LINC00661-203ENST00000549131 GAS2L2Q8NHY3 880 aa19.68■□□□□ 0.74
LINC00661-203ENST00000549131 DLG5Q8TDM6 1919 aa19.68■□□□□ 0.74
LINC00661-203ENST00000549131 U2AF1L5P0DN76 240 aaPredicted RBP19.67■□□□□ 0.74
LINC00661-203ENST00000549131 U2AF1Q01081 240 aaKnown RBP eCLIP19.67■□□□□ 0.74
LINC00661-203ENST00000549131 RSPH6AQ9H0K4 717 aa19.67■□□□□ 0.74
LINC00661-203ENST00000549131 RTCBQ9Y3I0 505 aaKnown RBP19.67■□□□□ 0.74
LINC00661-203ENST00000549131 GNAT3A8MTJ3 354 aa19.65■□□□□ 0.74
LINC00661-203ENST00000549131 NLGN2Q8NFZ4 835 aa19.65■□□□□ 0.74
LINC00661-203ENST00000549131 CRKLP46109 303 aaKnown RBP19.64■□□□□ 0.73
LINC00661-203ENST00000549131 SLC39A6Q13433 755 aa19.64■□□□□ 0.73
LINC00661-203ENST00000549131 RC3H1Q5TC82 1133 aaKnown RBP19.64■□□□□ 0.73
LINC00661-203ENST00000549131 UTRNP46939 3433 aa19.63■□□□□ 0.73
LINC00661-203ENST00000549131 KIF13BQ9NQT8 1826 aa19.63■□□□□ 0.73
LINC00661-203ENST00000549131 YY1P25490 414 aa19.63■□□□□ 0.73
LINC00661-203ENST00000549131 TEFQ10587 303 aa19.63■□□□□ 0.73
LINC00661-203ENST00000549131 TRAPPC3LQ5T215 181 aa19.63■□□□□ 0.73
LINC00661-203ENST00000549131 PELP1Q8IZL8 1130 aaKnown RBP19.63■□□□□ 0.73
LINC00661-203ENST00000549131 PHACTR3Q96KR7 559 aa19.63■□□□□ 0.73
LINC00661-203ENST00000549131 GOLGB1Q14789 3259 aaKnown RBP19.62■□□□□ 0.73
LINC00661-203ENST00000549131 ADRA2BP18089 450 aa19.62■□□□□ 0.73
LINC00661-203ENST00000549131 RPS6KA4O75676 772 aa19.61■□□□□ 0.73
LINC00661-203ENST00000549131 GPR162Q16538 588 aa19.61■□□□□ 0.73
LINC00661-203ENST00000549131 TTC5Q8N0Z6 440 aa19.61■□□□□ 0.73
LINC00661-203ENST00000549131 RFC4P35249 363 aa19.6■□□□□ 0.73
LINC00661-203ENST00000549131 DNAJC10Q8IXB1 793 aa19.6■□□□□ 0.73
LINC00661-203ENST00000549131 ARHGEF1Q92888 912 aaKnown RBP19.6■□□□□ 0.73
LINC00661-203ENST00000549131 FCHSD2O94868 740 aa19.59■□□□□ 0.73
LINC00661-203ENST00000549131 DDX10Q13206 875 aaKnown RBP19.59■□□□□ 0.73
LINC00661-203ENST00000549131 IL17REQ8NFR9 667 aa19.59■□□□□ 0.73
LINC00661-203ENST00000549131 N4BP2Q86UW6 1770 aaPredicted RBP19.59■□□□□ 0.73
LINC00661-203ENST00000549131 CEMIPQ8WUJ3 1361 aa19.58■□□□□ 0.73
LINC00661-203ENST00000549131 CCDC87Q9NVE4 849 aa19.58■□□□□ 0.72
LINC00661-203ENST00000549131 CD2APQ9Y5K6 639 aa19.58■□□□□ 0.72
LINC00661-203ENST00000549131 KIAA1551Q9HCM1 1747 aa19.58■□□□□ 0.72
LINC00661-203ENST00000549131 MMP10P09238 476 aa19.57■□□□□ 0.72
LINC00661-203ENST00000549131 RTF1Q92541 710 aaKnown RBP19.56■□□□□ 0.72
LINC00661-203ENST00000549131 SCN7AQ01118 1682 aa19.56■□□□□ 0.72
LINC00661-203ENST00000549131 NEFMP07197 916 aa19.55■□□□□ 0.72
LINC00661-203ENST00000549131 GYS1P13807 737 aa19.55■□□□□ 0.72
LINC00661-203ENST00000549131 RALBP1Q15311 655 aa19.55■□□□□ 0.72
LINC00661-203ENST00000549131 INTS5Q6P9B9 1019 aaKnown RBP19.55■□□□□ 0.72
LINC00661-203ENST00000549131 VSIG10Q8N0Z9 540 aa19.55■□□□□ 0.72
LINC00661-203ENST00000549131 NLGN1Q8N2Q7 840 aa19.55■□□□□ 0.72
LINC00661-203ENST00000549131 COL15A1P39059 1388 aa19.55■□□□□ 0.72
LINC00661-203ENST00000549131 USP42Q9H9J4 1324 aaKnown RBP19.54■□□□□ 0.72
LINC00661-203ENST00000549131 CYP19A1P11511 503 aaPredicted RBP19.54■□□□□ 0.72
LINC00661-203ENST00000549131 ZNF790Q6PG37 636 aa19.54■□□□□ 0.72
LINC00661-203ENST00000549131 MCM10Q7L590 875 aa19.54■□□□□ 0.72
LINC00661-203ENST00000549131 SRP68Q9UHB9 627 aaKnown RBP19.54■□□□□ 0.72
LINC00661-203ENST00000549131 LAMB4A4D0S4 1761 aa19.54■□□□□ 0.72
LINC00661-203ENST00000549131 KDM3BQ7LBC6 1761 aa19.54■□□□□ 0.72
LINC00661-203ENST00000549131 HEG1Q9ULI3 1381 aa19.54■□□□□ 0.72
LINC00661-203ENST00000549131 SOS1Q07889 1333 aaPredicted RBP19.53■□□□□ 0.72
LINC00661-203ENST00000549131 AFDNP55196 1824 aaKnown RBP19.53■□□□□ 0.72
LINC00661-203ENST00000549131 C10orf71Q711Q0 1435 aa19.53■□□□□ 0.72
LINC00661-203ENST00000549131 ZNF496Q96IT1 587 aaPredicted RBP19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms