RNA–Protein interactions for RNA: ENST00000548821.1

GCN1-205, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 504 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-205ENST00000548821 RFC4P35249 363 aa13.01□□□□□ -0.33
GCN1-205ENST00000548821 MSL1Q68DK7 614 aa13.01□□□□□ -0.33
GCN1-205ENST00000548821 PKD1L3Q7Z443 1732 aa13□□□□□ -0.33
GCN1-205ENST00000548821 SHANK3Q9BYB0 1731 aa13□□□□□ -0.33
GCN1-205ENST00000548821 ANKRD26Q9UPS8 1709 aa13□□□□□ -0.33
GCN1-205ENST00000548821 KIF7Q2M1P5 1343 aa12.99□□□□□ -0.33
GCN1-205ENST00000548821 IL13P35225 146 aa12.99□□□□□ -0.33
GCN1-205ENST00000548821 AMER1Q5JTC6 1135 aaPredicted RBP12.99□□□□□ -0.33
GCN1-205ENST00000548821 LINC00116Q8NCU8 138 aa12.99□□□□□ -0.33
GCN1-205ENST00000548821 CFAP53Q96M91 514 aa12.99□□□□□ -0.33
GCN1-205ENST00000548821 CNTNAP4Q9C0A0 1308 aa12.98□□□□□ -0.33
GCN1-205ENST00000548821 RPS6KA4O75676 772 aa12.98□□□□□ -0.33
GCN1-205ENST00000548821 TGFB2P61812 414 aa12.98□□□□□ -0.33
GCN1-205ENST00000548821 NFATC2IPQ8NCF5 419 aa12.98□□□□□ -0.33
GCN1-205ENST00000548821 NLGN2Q8NFZ4 835 aa12.98□□□□□ -0.33
GCN1-205ENST00000548821 CCDC87Q9NVE4 849 aa12.98□□□□□ -0.33
GCN1-205ENST00000548821 PARP3Q9Y6F1 533 aa12.98□□□□□ -0.33
GCN1-205ENST00000548821 KDRP35968 1356 aa12.97□□□□□ -0.33
GCN1-205ENST00000548821 C5P01031 1676 aa12.97□□□□□ -0.33
GCN1-205ENST00000548821 NUDCQ9Y266 331 aa12.97□□□□□ -0.33
GCN1-205ENST00000548821 C4BP0C0L5 1744 aa12.96□□□□□ -0.33
GCN1-205ENST00000548821 NPC1L1Q9UHC9 1359 aa12.96□□□□□ -0.33
GCN1-205ENST00000548821 PTCD1O75127 700 aaKnown RBP12.96□□□□□ -0.33
GCN1-205ENST00000548821 GIGYF1O75420 1035 aaPredicted RBP12.96□□□□□ -0.33
GCN1-205ENST00000548821 ITPK1Q13572 414 aa12.96□□□□□ -0.33
GCN1-205ENST00000548821 NPM2Q86SE8 214 aaKnown RBP12.96□□□□□ -0.33
GCN1-205ENST00000548821 PER1O15534 1290 aaPredicted RBP12.95□□□□□ -0.34
GCN1-205ENST00000548821 MMP10P09238 476 aa12.95□□□□□ -0.34
GCN1-205ENST00000548821 CC2D1BQ5T0F9 858 aaKnown RBP12.95□□□□□ -0.34
GCN1-205ENST00000548821 ARHGEF1Q92888 912 aaKnown RBP12.95□□□□□ -0.34
GCN1-205ENST00000548821 TEX13AQ9BXU3 409 aaPredicted RBP12.95□□□□□ -0.34
GCN1-205ENST00000548821 COL24A1Q17RW2 1714 aa12.94□□□□□ -0.34
GCN1-205ENST00000548821 ZPR1O75312 459 aa12.94□□□□□ -0.34
GCN1-205ENST00000548821 AEBP1Q8IUX7 1158 aa12.94□□□□□ -0.34
GCN1-205ENST00000548821 TTC5Q8N0Z6 440 aa12.94□□□□□ -0.34
GCN1-205ENST00000548821 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
GCN1-205ENST00000548821 GAS2L2Q8NHY3 880 aa12.94□□□□□ -0.34
GCN1-205ENST00000548821 SLC52A2Q9HAB3 445 aa12.94□□□□□ -0.34
GCN1-205ENST00000548821 ITGB4P16144 1822 aa12.93□□□□□ -0.34
GCN1-205ENST00000548821 STARD3NLO95772 234 aa12.93□□□□□ -0.34
GCN1-205ENST00000548821 NEFMP07197 916 aa12.93□□□□□ -0.34
GCN1-205ENST00000548821 C1QTNF8P60827 252 aa12.93□□□□□ -0.34
GCN1-205ENST00000548821 U2SURPO15042 1029 aaKnown RBP12.92□□□□□ -0.34
GCN1-205ENST00000548821 HMOX1P09601 288 aa12.92□□□□□ -0.34
GCN1-205ENST00000548821 CRKLP46109 303 aaKnown RBP12.92□□□□□ -0.34
GCN1-205ENST00000548821 TEFQ10587 303 aa12.92□□□□□ -0.34
GCN1-205ENST00000548821 A0A087WZG4 1122 aa12.91□□□□□ -0.34
GCN1-205ENST00000548821 RNMTO43148 476 aaKnown RBP12.91□□□□□ -0.34
GCN1-205ENST00000548821 YBX3P16989 372 aaKnown RBP eCLIP12.91□□□□□ -0.34
GCN1-205ENST00000548821 GPBP1L1Q9HC44 474 aaPredicted RBP12.91□□□□□ -0.34
GCN1-205ENST00000548821 CHD4Q14839 1912 aa12.91□□□□□ -0.34
GCN1-205ENST00000548821 GNAT3A8MTJ3 354 aa12.9□□□□□ -0.34
GCN1-205ENST00000548821 GYS1P13807 737 aa12.9□□□□□ -0.34
GCN1-205ENST00000548821 TOGARAM1Q9Y4F4 1720 aa12.9□□□□□ -0.34
GCN1-205ENST00000548821 TAF1LQ8IZX4 1826 aa12.9□□□□□ -0.34
GCN1-205ENST00000548821 ZNF831Q5JPB2 1677 aa12.89□□□□□ -0.35
GCN1-205ENST00000548821 KDM6AO15550 1401 aaPredicted RBP12.89□□□□□ -0.35
GCN1-205ENST00000548821 MTHFSDQ2M296 383 aaKnown RBP12.89□□□□□ -0.35
GCN1-205ENST00000548821 RTF1Q92541 710 aaKnown RBP12.89□□□□□ -0.35
GCN1-205ENST00000548821 PNNQ9H307 717 aaKnown RBP12.89□□□□□ -0.35
GCN1-205ENST00000548821 SLC4A9Q96Q91 983 aa12.88□□□□□ -0.35
GCN1-205ENST00000548821 PIM2Q9P1W9 311 aa12.88□□□□□ -0.35
GCN1-205ENST00000548821 PDZRN3Q9UPQ7 1066 aa12.88□□□□□ -0.35
GCN1-205ENST00000548821 BCS1LQ9Y276 419 aa12.88□□□□□ -0.35
GCN1-205ENST00000548821 TUBGCP6Q96RT7 1819 aa12.88□□□□□ -0.35
GCN1-205ENST00000548821 SENP3-EIF4A1A0A087X0R7 540 aa12.87□□□□□ -0.35
GCN1-205ENST00000548821 AMIGO3Q86WK7 504 aa12.87□□□□□ -0.35
GCN1-205ENST00000548821 LGR6Q9HBX8 967 aa12.87□□□□□ -0.35
GCN1-205ENST00000548821 USP42Q9H9J4 1324 aaKnown RBP12.87□□□□□ -0.35
GCN1-205ENST00000548821 FCHSD2O94868 740 aa12.86□□□□□ -0.35
GCN1-205ENST00000548821 DALRD3Q5D0E6 543 aaKnown RBP12.86□□□□□ -0.35
GCN1-205ENST00000548821 NARFQ9UHQ1 456 aa12.86□□□□□ -0.35
GCN1-205ENST00000548821 UBR3Q6ZT12 1888 aa12.86□□□□□ -0.35
GCN1-205ENST00000548821 CYP19A1P11511 503 aaPredicted RBP12.85□□□□□ -0.35
GCN1-205ENST00000548821 CNGB1Q14028 1251 aaPredicted RBP12.85□□□□□ -0.35
GCN1-205ENST00000548821 INTS5Q6P9B9 1019 aaKnown RBP12.85□□□□□ -0.35
GCN1-205ENST00000548821 ARHGAP27Q6ZUM4 889 aa12.85□□□□□ -0.35
GCN1-205ENST00000548821 SMIM5Q71RC9 77 aa12.85□□□□□ -0.35
GCN1-205ENST00000548821 DNAJC10Q8IXB1 793 aa12.85□□□□□ -0.35
GCN1-205ENST00000548821 FMNL2Q96PY5 1086 aa12.85□□□□□ -0.35
GCN1-205ENST00000548821 A0A0G2JLW4 131 aa12.84□□□□□ -0.35
GCN1-205ENST00000548821 HTATSF1O43719 755 aaKnown RBP12.84□□□□□ -0.35
GCN1-205ENST00000548821 ZNF790Q6PG37 636 aa12.84□□□□□ -0.35
GCN1-205ENST00000548821 BTBD11A6QL63 1104 aa12.83□□□□□ -0.36
GCN1-205ENST00000548821 U2AF1L5P0DN76 240 aaPredicted RBP12.83□□□□□ -0.36
GCN1-205ENST00000548821 DPEP1P16444 411 aa12.83□□□□□ -0.36
GCN1-205ENST00000548821 TM4SF1P30408 202 aa12.83□□□□□ -0.36
GCN1-205ENST00000548821 U2AF1Q01081 240 aaKnown RBP eCLIP12.83□□□□□ -0.36
GCN1-205ENST00000548821 SLC39A6Q13433 755 aa12.83□□□□□ -0.36
GCN1-205ENST00000548821 USPL1Q5W0Q7 1092 aa12.83□□□□□ -0.36
GCN1-205ENST00000548821 SOS1Q07889 1333 aaPredicted RBP12.83□□□□□ -0.36
GCN1-205ENST00000548821 ATP10DQ9P241 1426 aa12.82□□□□□ -0.36
GCN1-205ENST00000548821 NPHP1O15259 732 aa12.82□□□□□ -0.36
GCN1-205ENST00000548821 FKBP8Q14318 412 aa12.82□□□□□ -0.36
GCN1-205ENST00000548821 UTRNP46939 3433 aa12.81□□□□□ -0.36
GCN1-205ENST00000548821 C10orf71Q711Q0 1435 aa12.81□□□□□ -0.36
GCN1-205ENST00000548821 CANXP27824 592 aaKnown RBP12.81□□□□□ -0.36
GCN1-205ENST00000548821 PRKAR2BP31323 418 aa12.81□□□□□ -0.36
GCN1-205ENST00000548821 IL6STP40189 918 aaPredicted RBP12.81□□□□□ -0.36
GCN1-205ENST00000548821 C16orf71Q8IYS4 520 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms