RNA–Protein interactions for RNA: ENST00000548658.1

BEST3-209, Transcript of bestrophin 3, humanhuman

TSL 5

Gene BEST3, Length 572 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3-209ENST00000548658 CABP4P57796 275 aa15.37■□□□□ 0.05
BEST3-209ENST00000548658 COL23A1Q86Y22 540 aaPredicted RBP15.37■□□□□ 0.05
BEST3-209ENST00000548658 ASAP1Q9ULH1 1129 aa15.37■□□□□ 0.05
BEST3-209ENST00000548658 ATP6V1AP38606 617 aa15.36■□□□□ 0.05
BEST3-209ENST00000548658 ATG3Q9NT62 314 aa15.36■□□□□ 0.05
BEST3-209ENST00000548658 MAP3K5Q99683 1374 aa15.36■□□□□ 0.05
BEST3-209ENST00000548658 C5P01031 1676 aa15.35■□□□□ 0.05
BEST3-209ENST00000548658 AKAP4Q5JQC9 854 aa15.35■□□□□ 0.05
BEST3-209ENST00000548658 CFAP53Q96M91 514 aa15.34■□□□□ 0.05
BEST3-209ENST00000548658 HMOX1P09601 288 aa15.33■□□□□ 0.04
BEST3-209ENST00000548658 SSFA2P28290 1259 aa15.33■□□□□ 0.04
BEST3-209ENST00000548658 CNGB1Q14028 1251 aaPredicted RBP15.33■□□□□ 0.04
BEST3-209ENST00000548658 TAF1LQ8IZX4 1826 aa15.33■□□□□ 0.04
BEST3-209ENST00000548658 NFATC2IPQ8NCF5 419 aa15.32■□□□□ 0.04
BEST3-209ENST00000548658 RBM42Q9BTD8 480 aaKnown RBP15.32■□□□□ 0.04
BEST3-209ENST00000548658 KDM6AO15550 1401 aaPredicted RBP15.32■□□□□ 0.04
BEST3-209ENST00000548658 C4BP0C0L5 1744 aa15.31■□□□□ 0.04
BEST3-209ENST00000548658 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.31■□□□□ 0.04
BEST3-209ENST00000548658 LINC00116Q8NCU8 138 aa15.31■□□□□ 0.04
BEST3-209ENST00000548658 TUBGCP6Q96RT7 1819 aa15.31■□□□□ 0.04
BEST3-209ENST00000548658 U2SURPO15042 1029 aaKnown RBP15.3■□□□□ 0.04
BEST3-209ENST00000548658 ITPK1Q13572 414 aa15.3■□□□□ 0.04
BEST3-209ENST00000548658 COL24A1Q17RW2 1714 aa15.3■□□□□ 0.04
BEST3-209ENST00000548658 NUDCQ9Y266 331 aa15.3■□□□□ 0.04
BEST3-209ENST00000548658 GNPATO15228 680 aa15.29■□□□□ 0.04
BEST3-209ENST00000548658 RC3H1Q5TC82 1133 aaKnown RBP15.29■□□□□ 0.04
BEST3-209ENST00000548658 KLHL34Q8N239 644 aa15.29■□□□□ 0.04
BEST3-209ENST00000548658 RTCBQ9Y3I0 505 aaKnown RBP15.29■□□□□ 0.04
BEST3-209ENST00000548658 PHF14O94880 888 aa15.28■□□□□ 0.04
BEST3-209ENST00000548658 YY1P25490 414 aa15.28■□□□□ 0.04
BEST3-209ENST00000548658 MTHFSDQ2M296 383 aaKnown RBP15.28■□□□□ 0.04
BEST3-209ENST00000548658 TRAPPC3LQ5T215 181 aa15.28■□□□□ 0.04
BEST3-209ENST00000548658 SLC52A2Q9HAB3 445 aa15.28■□□□□ 0.04
BEST3-209ENST00000548658 PTCD1O75127 700 aaKnown RBP15.27■□□□□ 0.04
BEST3-209ENST00000548658 MSL1Q68DK7 614 aa15.27■□□□□ 0.04
BEST3-209ENST00000548658 GAS2L2Q8NHY3 880 aa15.27■□□□□ 0.04
BEST3-209ENST00000548658 CD2APQ9Y5K6 639 aa15.27■□□□□ 0.04
BEST3-209ENST00000548658 ZNF831Q5JPB2 1677 aa15.27■□□□□ 0.03
BEST3-209ENST00000548658 CNTNAP4Q9C0A0 1308 aa15.26■□□□□ 0.03
BEST3-209ENST00000548658 RNMTO43148 476 aaKnown RBP15.26■□□□□ 0.03
BEST3-209ENST00000548658 PPP2R1AP30153 589 aa15.26■□□□□ 0.03
BEST3-209ENST00000548658 GPR162Q16538 588 aa15.26■□□□□ 0.03
BEST3-209ENST00000548658 SLC4A9Q96Q91 983 aa15.26■□□□□ 0.03
BEST3-209ENST00000548658 LGR6Q9HBX8 967 aa15.26■□□□□ 0.03
BEST3-209ENST00000548658 UBR3Q6ZT12 1888 aa15.26■□□□□ 0.03
BEST3-209ENST00000548658 COL3A1P02461 1466 aaPredicted RBP15.26■□□□□ 0.03
BEST3-209ENST00000548658 RPS6KA4O75676 772 aa15.25■□□□□ 0.03
BEST3-209ENST00000548658 SCN11AQ9UI33 1791 aa15.25■□□□□ 0.03
BEST3-209ENST00000548658 GNAT3A8MTJ3 354 aa15.24■□□□□ 0.03
BEST3-209ENST00000548658 AMIGO3Q86WK7 504 aa15.24■□□□□ 0.03
BEST3-209ENST00000548658 NLGN1Q8N2Q7 840 aa15.24■□□□□ 0.03
BEST3-209ENST00000548658 FCHSD2O94868 740 aa15.23■□□□□ 0.03
BEST3-209ENST00000548658 RFC4P35249 363 aa15.23■□□□□ 0.03
BEST3-209ENST00000548658 U2AF1L5P0DN76 240 aaPredicted RBP15.22■□□□□ 0.03
BEST3-209ENST00000548658 U2AF1Q01081 240 aaKnown RBP eCLIP15.22■□□□□ 0.03
BEST3-209ENST00000548658 VSIG10Q8N0Z9 540 aa15.22■□□□□ 0.03
BEST3-209ENST00000548658 ARHGEF1Q92888 912 aaKnown RBP15.22■□□□□ 0.03
BEST3-209ENST00000548658 GRIN3BO60391 1043 aa15.21■□□□□ 0.03
BEST3-209ENST00000548658 PRKAR2BP31323 418 aa15.21■□□□□ 0.03
BEST3-209ENST00000548658 CRKLP46109 303 aaKnown RBP15.21■□□□□ 0.03
BEST3-209ENST00000548658 TEFQ10587 303 aa15.21■□□□□ 0.03
BEST3-209ENST00000548658 SMIM5Q71RC9 77 aa15.21■□□□□ 0.03
BEST3-209ENST00000548658 NLGN2Q8NFZ4 835 aa15.21■□□□□ 0.03
BEST3-209ENST00000548658 MRC1P22897 1456 aa15.2■□□□□ 0.02
BEST3-209ENST00000548658 PELP1Q8IZL8 1130 aaKnown RBP15.2■□□□□ 0.02
BEST3-209ENST00000548658 TTC5Q8N0Z6 440 aa15.2■□□□□ 0.02
BEST3-209ENST00000548658 RSPH6AQ9H0K4 717 aa15.2■□□□□ 0.02
BEST3-209ENST00000548658 NEFMP07197 916 aa15.19■□□□□ 0.02
BEST3-209ENST00000548658 SLC39A6Q13433 755 aa15.19■□□□□ 0.02
BEST3-209ENST00000548658 IL17REQ8NFR9 667 aa15.19■□□□□ 0.02
BEST3-209ENST00000548658 COL5A3P25940 1745 aaPredicted RBP15.19■□□□□ 0.02
BEST3-209ENST00000548658 MMP10P09238 476 aa15.18■□□□□ 0.02
BEST3-209ENST00000548658 RTF1Q92541 710 aaKnown RBP15.18■□□□□ 0.02
BEST3-209ENST00000548658 PHACTR3Q96KR7 559 aa15.18■□□□□ 0.02
BEST3-209ENST00000548658 TEX13AQ9BXU3 409 aaPredicted RBP15.18■□□□□ 0.02
BEST3-209ENST00000548658 CCDC87Q9NVE4 849 aa15.18■□□□□ 0.02
BEST3-209ENST00000548658 ADAMTS7Q9UKP4 1686 aa15.18■□□□□ 0.02
BEST3-209ENST00000548658 SLC4A2P04920 1241 aa15.17■□□□□ 0.02
BEST3-209ENST00000548658 DNAJC10Q8IXB1 793 aa15.17■□□□□ 0.02
BEST3-209ENST00000548658 PNNQ9H307 717 aaKnown RBP15.17■□□□□ 0.02
BEST3-209ENST00000548658 CICQ96RK0 1608 aaPredicted RBP15.17■□□□□ 0.02
BEST3-209ENST00000548658 CHD4Q14839 1912 aa15.16■□□□□ 0.02
BEST3-209ENST00000548658 HTATSF1O43719 755 aaKnown RBP15.16■□□□□ 0.02
BEST3-209ENST00000548658 STARD3NLO95772 234 aa15.16■□□□□ 0.02
BEST3-209ENST00000548658 CYP19A1P11511 503 aaPredicted RBP15.16■□□□□ 0.02
BEST3-209ENST00000548658 GYS1P13807 737 aa15.16■□□□□ 0.02
BEST3-209ENST00000548658 RALBP1Q15311 655 aa15.16■□□□□ 0.02
BEST3-209ENST00000548658 INTS5Q6P9B9 1019 aaKnown RBP15.16■□□□□ 0.02
BEST3-209ENST00000548658 ZNF790Q6PG37 636 aa15.16■□□□□ 0.02
BEST3-209ENST00000548658 PARP3Q9Y6F1 533 aa15.16■□□□□ 0.02
BEST3-209ENST00000548658 MYH14Q7Z406 1995 aaKnown RBP15.16■□□□□ 0.02
BEST3-209ENST00000548658 UTRNP46939 3433 aa15.15■□□□□ 0.02
BEST3-209ENST00000548658 VIRMAQ69YN4 1812 aaKnown RBP15.15■□□□□ 0.02
BEST3-209ENST00000548658 CEMIPQ8WUJ3 1361 aa15.15■□□□□ 0.02
BEST3-209ENST00000548658 ZPR1O75312 459 aa15.15■□□□□ 0.02
BEST3-209ENST00000548658 TGFB2P61812 414 aa15.14■□□□□ 0.01
BEST3-209ENST00000548658 USP42Q9H9J4 1324 aaKnown RBP15.14■□□□□ 0.01
BEST3-209ENST00000548658 BTBD11A6QL63 1104 aa15.13■□□□□ 0.01
BEST3-209ENST00000548658 YBX3P16989 372 aaKnown RBP eCLIP15.13■□□□□ 0.01
BEST3-209ENST00000548658 TJP1Q07157 1748 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms