RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 FAM161AQ3B820 660 aa8.21□□□□□ -1.1
SYNE1-239ENST00000545694 NUDCQ9Y266 331 aa8.21□□□□□ -1.1
SYNE1-239ENST00000545694 MINK1Q8N4C8 1332 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-239ENST00000545694 ITSN1Q15811 1721 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 AKAP12Q02952 1782 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 CDC42BPGQ6DT37 1551 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 NUTM2FA1L443 756 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 TRAF7Q6Q0C0 670 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 NECTIN2Q92692 538 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 BCANQ96GW7 911 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 A0A1W2PP64 1363 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 MON2Q7Z3U7 1717 aa8.2□□□□□ -1.1
SYNE1-239ENST00000545694 ZPR1O75312 459 aa8.19□□□□□ -1.1
SYNE1-239ENST00000545694 LTKP29376 864 aa8.19□□□□□ -1.1
SYNE1-239ENST00000545694 CEBPAP49715 358 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-239ENST00000545694 CNGB1Q14028 1251 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-239ENST00000545694 ANKLE2Q86XL3 938 aa8.19□□□□□ -1.1
SYNE1-239ENST00000545694 PCDHB3Q9Y5E6 796 aa8.19□□□□□ -1.1
SYNE1-239ENST00000545694 V9GY48 417 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-239ENST00000545694 XRN1Q8IZH2 1706 aaKnown RBP8.19□□□□□ -1.1
SYNE1-239ENST00000545694 CHD2O14647 1828 aaKnown RBP8.19□□□□□ -1.1
SYNE1-239ENST00000545694 CPSF1Q10570 1443 aaKnown RBP8.19□□□□□ -1.1
SYNE1-239ENST00000545694 EDC4Q6P2E9 1401 aaKnown RBP8.19□□□□□ -1.1
SYNE1-239ENST00000545694 CD163L1Q9NR16 1453 aa8.19□□□□□ -1.1
SYNE1-239ENST00000545694 SAFB2Q14151 953 aaKnown RBP eCLIP8.18□□□□□ -1.1
SYNE1-239ENST00000545694 BLOC1S3Q6QNY0 202 aa8.18□□□□□ -1.1
SYNE1-239ENST00000545694 PNNQ9H307 717 aaKnown RBP8.18□□□□□ -1.1
SYNE1-239ENST00000545694 SUPT16HQ9Y5B9 1047 aaKnown RBP8.18□□□□□ -1.1
SYNE1-239ENST00000545694 TOPAZ1Q8N9V7 1692 aa8.18□□□□□ -1.1
SYNE1-239ENST00000545694 NRG2O14511 850 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-239ENST00000545694 DNAJB2P25686 324 aa8.17□□□□□ -1.1
SYNE1-239ENST00000545694 GGCXP38435 758 aa8.17□□□□□ -1.1
SYNE1-239ENST00000545694 WAPLQ7Z5K2 1190 aa8.17□□□□□ -1.1
SYNE1-239ENST00000545694 RBM46Q8TBY0 533 aaKnown RBP8.17□□□□□ -1.1
SYNE1-239ENST00000545694 ADAMTS8Q9UP79 889 aa8.17□□□□□ -1.1
SYNE1-239ENST00000545694 ADGRG1Q9Y653 693 aa8.17□□□□□ -1.1
SYNE1-239ENST00000545694 PLEKHG3A1L390 1219 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 MAP2P11137 1827 aaKnown RBP8.16□□□□□ -1.1
SYNE1-239ENST00000545694 SHPRHQ149N8 1683 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 RNF123Q5XPI4 1314 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 PPIP5K1Q6PFW1 1433 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 ANKARQ7Z5J8 1434 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 NUDT16Q96DE0 195 aaKnown RBP8.16□□□□□ -1.1
SYNE1-239ENST00000545694 ROBO2Q9HCK4 1378 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 CABP1Q9NZU7 370 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-239ENST00000545694 PLEKHH1Q9ULM0 1364 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 PDZRN3Q9UPQ7 1066 aa8.16□□□□□ -1.1
SYNE1-239ENST00000545694 AATKQ6ZMQ8 1374 aa8.15□□□□□ -1.1
SYNE1-239ENST00000545694 RCCD1A6NED2 376 aa8.15□□□□□ -1.1
SYNE1-239ENST00000545694 FYB1O15117 783 aa8.15□□□□□ -1.1
SYNE1-239ENST00000545694 TMEM134Q9H6X4 195 aa8.15□□□□□ -1.1
SYNE1-239ENST00000545694 AMOTL2Q9Y2J4 779 aa8.15□□□□□ -1.1
SYNE1-239ENST00000545694 PTPRUQ92729 1446 aa8.14□□□□□ -1.11
SYNE1-239ENST00000545694 PNPLA6Q8IY17 1366 aa8.14□□□□□ -1.11
SYNE1-239ENST00000545694 SEMA3EO15041 775 aa8.14□□□□□ -1.11
SYNE1-239ENST00000545694 TLL1O43897 1013 aa8.14□□□□□ -1.11
SYNE1-239ENST00000545694 PRR14Q9BWN1 585 aa8.14□□□□□ -1.11
SYNE1-239ENST00000545694 ZNF521Q96K83 1311 aa8.13□□□□□ -1.11
SYNE1-239ENST00000545694 RNF223E7ERA6 249 aa8.13□□□□□ -1.11
SYNE1-239ENST00000545694 MTHFSP49914 203 aa8.13□□□□□ -1.11
SYNE1-239ENST00000545694 CCDC27Q2M243 656 aa8.13□□□□□ -1.11
SYNE1-239ENST00000545694 RUNDC1Q96C34 613 aa8.13□□□□□ -1.11
SYNE1-239ENST00000545694 TMUB1Q9BVT8 246 aa8.13□□□□□ -1.11
SYNE1-239ENST00000545694 LRRC7Q96NW7 1537 aa8.13□□□□□ -1.11
SYNE1-239ENST00000545694 FMN2Q9NZ56 1722 aa8.12□□□□□ -1.11
SYNE1-239ENST00000545694 TTC21AQ8NDW8 1320 aa8.12□□□□□ -1.11
SYNE1-239ENST00000545694 PPEF1O14829 653 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-239ENST00000545694 SLC26A8Q96RN1 970 aa8.12□□□□□ -1.11
SYNE1-239ENST00000545694 NRKQ7Z2Y5 1582 aa8.12□□□□□ -1.11
SYNE1-239ENST00000545694 NPHP4O75161 1426 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-239ENST00000545694 E9PSI1 815 aa8.11□□□□□ -1.11
SYNE1-239ENST00000545694 ACTN4O43707 911 aaKnown RBP8.11□□□□□ -1.11
SYNE1-239ENST00000545694 FCHSD2O94868 740 aa8.11□□□□□ -1.11
SYNE1-239ENST00000545694 CFHP08603 1231 aa8.11□□□□□ -1.11
SYNE1-239ENST00000545694 SLC10A3P09131 477 aa8.11□□□□□ -1.11
SYNE1-239ENST00000545694 EMID1Q96A84 441 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-239ENST00000545694 COG3Q96JB2 828 aa8.11□□□□□ -1.11
SYNE1-239ENST00000545694 PPP4R2Q9NY27 417 aa8.11□□□□□ -1.11
SYNE1-239ENST00000545694 NALCNQ8IZF0 1738 aa8.11□□□□□ -1.11
SYNE1-239ENST00000545694 COL3A1P02461 1466 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-239ENST00000545694 CDK12Q9NYV4 1490 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-239ENST00000545694 USP54Q70EL1 1684 aa8.11□□□□□ -1.11
SYNE1-239ENST00000545694 NWD1Q149M9 1564 aa8.1□□□□□ -1.11
SYNE1-239ENST00000545694 SLC19A1P41440 591 aa8.1□□□□□ -1.11
SYNE1-239ENST00000545694 KMT5BQ4FZB7 885 aa8.1□□□□□ -1.11
SYNE1-239ENST00000545694 WDR63Q8IWG1 891 aa8.1□□□□□ -1.11
SYNE1-239ENST00000545694 GGNBP2Q9H3C7 697 aa8.1□□□□□ -1.11
SYNE1-239ENST00000545694 RCAN3Q9UKA8 241 aa8.1□□□□□ -1.11
SYNE1-239ENST00000545694 USP6P35125 1406 aa8.1□□□□□ -1.11
SYNE1-239ENST00000545694 NCOA3Q9Y6Q9 1424 aa8.1□□□□□ -1.11
SYNE1-239ENST00000545694 PRR36Q9H6K5 1346 aa8.09□□□□□ -1.11
SYNE1-239ENST00000545694 NKTRP30414 1462 aaKnown RBP8.09□□□□□ -1.11
SYNE1-239ENST00000545694 DIAPH1O60610 1272 aaKnown RBP8.09□□□□□ -1.11
SYNE1-239ENST00000545694 S1PR4O95977 384 aa8.09□□□□□ -1.11
SYNE1-239ENST00000545694 NEFMP07197 916 aa8.09□□□□□ -1.11
SYNE1-239ENST00000545694 KCNA6P17658 529 aa8.09□□□□□ -1.11
SYNE1-239ENST00000545694 TRMT2AQ8IZ69 625 aaKnown RBP8.09□□□□□ -1.11
SYNE1-239ENST00000545694 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-239ENST00000545694 SSH2Q76I76 1423 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms