RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 MSL1Q68DK7 614 aa26.92■■□□□ 1.9
CHD4-213ENST00000545584 PHF14O94880 888 aa26.91■■□□□ 1.9
CHD4-213ENST00000545584 LINC00116Q8NCU8 138 aa26.91■■□□□ 1.9
CHD4-213ENST00000545584 NPC1L1Q9UHC9 1359 aa26.91■■□□□ 1.9
CHD4-213ENST00000545584 CNGB1Q14028 1251 aaPredicted RBP26.9■■□□□ 1.9
CHD4-213ENST00000545584 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.89■■□□□ 1.9
CHD4-213ENST00000545584 DIAPH1O60610 1272 aaKnown RBP26.89■■□□□ 1.9
CHD4-213ENST00000545584 SSFA2P28290 1259 aa26.89■■□□□ 1.9
CHD4-213ENST00000545584 ITPK1Q13572 414 aa26.89■■□□□ 1.9
CHD4-213ENST00000545584 RBM42Q9BTD8 480 aaKnown RBP26.89■■□□□ 1.9
CHD4-213ENST00000545584 KDM6AO15550 1401 aaPredicted RBP26.89■■□□□ 1.89
CHD4-213ENST00000545584 GNPATO15228 680 aa26.87■■□□□ 1.89
CHD4-213ENST00000545584 GPR162Q16538 588 aa26.87■■□□□ 1.89
CHD4-213ENST00000545584 HMOX1P09601 288 aa26.86■■□□□ 1.89
CHD4-213ENST00000545584 UBR3Q6ZT12 1888 aa26.86■■□□□ 1.89
CHD4-213ENST00000545584 AKAP4Q5JQC9 854 aa26.85■■□□□ 1.89
CHD4-213ENST00000545584 AMIGO3Q86WK7 504 aa26.84■■□□□ 1.89
CHD4-213ENST00000545584 PELP1Q8IZL8 1130 aaKnown RBP26.83■■□□□ 1.89
CHD4-213ENST00000545584 NFATC2IPQ8NCF5 419 aa26.83■■□□□ 1.89
CHD4-213ENST00000545584 SMIM5Q71RC9 77 aa26.82■■□□□ 1.88
CHD4-213ENST00000545584 NLGN2Q8NFZ4 835 aa26.82■■□□□ 1.88
CHD4-213ENST00000545584 RTCBQ9Y3I0 505 aaKnown RBP26.81■■□□□ 1.88
CHD4-213ENST00000545584 SLC4A9Q96Q91 983 aa26.8■■□□□ 1.88
CHD4-213ENST00000545584 ZNF831Q5JPB2 1677 aa26.79■■□□□ 1.88
CHD4-213ENST00000545584 RC3H1Q5TC82 1133 aaKnown RBP26.79■■□□□ 1.88
CHD4-213ENST00000545584 CD2APQ9Y5K6 639 aa26.79■■□□□ 1.88
CHD4-213ENST00000545584 U2SURPO15042 1029 aaKnown RBP26.78■■□□□ 1.88
CHD4-213ENST00000545584 PTCD1O75127 700 aaKnown RBP26.78■■□□□ 1.88
CHD4-213ENST00000545584 TRAPPC3LQ5T215 181 aa26.78■■□□□ 1.88
CHD4-213ENST00000545584 SCN11AQ9UI33 1791 aa26.77■■□□□ 1.88
CHD4-213ENST00000545584 CNTNAP4Q9C0A0 1308 aa26.77■■□□□ 1.88
CHD4-213ENST00000545584 CFAP53Q96M91 514 aa26.76■■□□□ 1.87
CHD4-213ENST00000545584 CHD4Q14839 1912 aa26.75■■□□□ 1.87
CHD4-213ENST00000545584 ADRA2BP18089 450 aa26.75■■□□□ 1.87
CHD4-213ENST00000545584 MTHFSDQ2M296 383 aaKnown RBP26.75■■□□□ 1.87
CHD4-213ENST00000545584 SLC52A2Q9HAB3 445 aa26.75■■□□□ 1.87
CHD4-213ENST00000545584 RNMTO43148 476 aaKnown RBP26.74■■□□□ 1.87
CHD4-213ENST00000545584 LGR6Q9HBX8 967 aa26.74■■□□□ 1.87
CHD4-213ENST00000545584 COL3A1P02461 1466 aaPredicted RBP26.74■■□□□ 1.87
CHD4-213ENST00000545584 RPS6KA4O75676 772 aa26.73■■□□□ 1.87
CHD4-213ENST00000545584 GRIN3BO60391 1043 aa26.72■■□□□ 1.87
CHD4-213ENST00000545584 COL5A3P25940 1745 aaPredicted RBP26.72■■□□□ 1.87
CHD4-213ENST00000545584 RFC4P35249 363 aa26.71■■□□□ 1.87
CHD4-213ENST00000545584 NLGN1Q8N2Q7 840 aa26.7■■□□□ 1.86
CHD4-213ENST00000545584 ARHGEF1Q92888 912 aaKnown RBP26.7■■□□□ 1.86
CHD4-213ENST00000545584 GAS2L2Q8NHY3 880 aa26.69■■□□□ 1.86
CHD4-213ENST00000545584 NUDCQ9Y266 331 aa26.69■■□□□ 1.86
CHD4-213ENST00000545584 MMP10P09238 476 aa26.68■■□□□ 1.86
CHD4-213ENST00000545584 CRKLP46109 303 aaKnown RBP26.68■■□□□ 1.86
CHD4-213ENST00000545584 MRC1P22897 1456 aa26.68■■□□□ 1.86
CHD4-213ENST00000545584 YBX3P16989 372 aaKnown RBP eCLIP26.67■■□□□ 1.86
CHD4-213ENST00000545584 ZNF784Q8NCA9 323 aaPredicted RBP26.67■■□□□ 1.86
CHD4-213ENST00000545584 PPP2R1AP30153 589 aa26.65■■□□□ 1.86
CHD4-213ENST00000545584 SLC39A6Q13433 755 aa26.65■■□□□ 1.86
CHD4-213ENST00000545584 MYH14Q7Z406 1995 aaKnown RBP26.65■■□□□ 1.86
CHD4-213ENST00000545584 VIRMAQ69YN4 1812 aaKnown RBP26.65■■□□□ 1.86
CHD4-213ENST00000545584 GNAT3A8MTJ3 354 aa26.64■■□□□ 1.86
CHD4-213ENST00000545584 DNAJC10Q8IXB1 793 aa26.64■■□□□ 1.86
CHD4-213ENST00000545584 UTRNP46939 3433 aa26.64■■□□□ 1.85
CHD4-213ENST00000545584 TJP1Q07157 1748 aa26.63■■□□□ 1.85
CHD4-213ENST00000545584 GYS1P13807 737 aa26.63■■□□□ 1.85
CHD4-213ENST00000545584 CICQ96RK0 1608 aaPredicted RBP26.63■■□□□ 1.85
CHD4-213ENST00000545584 ADAMTS7Q9UKP4 1686 aa26.63■■□□□ 1.85
CHD4-213ENST00000545584 TEFQ10587 303 aa26.62■■□□□ 1.85
CHD4-213ENST00000545584 TTC5Q8N0Z6 440 aa26.61■■□□□ 1.85
CHD4-213ENST00000545584 CCDC87Q9NVE4 849 aa26.61■■□□□ 1.85
CHD4-213ENST00000545584 U2AF1L5P0DN76 240 aaPredicted RBP26.6■■□□□ 1.85
CHD4-213ENST00000545584 PRKAR2BP31323 418 aa26.6■■□□□ 1.85
CHD4-213ENST00000545584 U2AF1Q01081 240 aaKnown RBP eCLIP26.6■■□□□ 1.85
CHD4-213ENST00000545584 INTS5Q6P9B9 1019 aaKnown RBP26.6■■□□□ 1.85
CHD4-213ENST00000545584 PARP3Q9Y6F1 533 aa26.6■■□□□ 1.85
CHD4-213ENST00000545584 VSIG10Q8N0Z9 540 aa26.59■■□□□ 1.85
CHD4-213ENST00000545584 RSPH6AQ9H0K4 717 aa26.59■■□□□ 1.85
CHD4-213ENST00000545584 C4AP0C0L4 1744 aa26.58■■□□□ 1.85
CHD4-213ENST00000545584 KCPQ6ZWJ8 1503 aa26.57■■□□□ 1.84
CHD4-213ENST00000545584 CYP19A1P11511 503 aaPredicted RBP26.57■■□□□ 1.84
CHD4-213ENST00000545584 IL17REQ8NFR9 667 aa26.57■■□□□ 1.84
CHD4-213ENST00000545584 USP42Q9H9J4 1324 aaKnown RBP26.57■■□□□ 1.84
CHD4-213ENST00000545584 PHACTR3Q96KR7 559 aa26.56■■□□□ 1.84
CHD4-213ENST00000545584 SRP68Q9UHB9 627 aaKnown RBP26.56■■□□□ 1.84
CHD4-213ENST00000545584 ZPR1O75312 459 aa26.55■■□□□ 1.84
CHD4-213ENST00000545584 TGFB2P61812 414 aa26.55■■□□□ 1.84
CHD4-213ENST00000545584 WWC3Q9ULE0 1092 aa26.55■■□□□ 1.84
CHD4-213ENST00000545584 FCHSD2O94868 740 aa26.54■■□□□ 1.84
CHD4-213ENST00000545584 SOS1Q07889 1333 aaPredicted RBP26.54■■□□□ 1.84
CHD4-213ENST00000545584 STARD3NLO95772 234 aa26.53■■□□□ 1.84
CHD4-213ENST00000545584 FKBP8Q14318 412 aa26.52■■□□□ 1.84
CHD4-213ENST00000545584 ZNF790Q6PG37 636 aa26.52■■□□□ 1.84
CHD4-213ENST00000545584 C10orf71Q711Q0 1435 aa26.52■■□□□ 1.84
CHD4-213ENST00000545584 GOLGB1Q14789 3259 aaKnown RBP26.51■■□□□ 1.83
CHD4-213ENST00000545584 RTF1Q92541 710 aaKnown RBP26.51■■□□□ 1.83
CHD4-213ENST00000545584 TEX13AQ9BXU3 409 aaPredicted RBP26.51■■□□□ 1.83
CHD4-213ENST00000545584 ZBTB1Q9Y2K1 713 aa26.51■■□□□ 1.83
CHD4-213ENST00000545584 KIF13BQ9NQT8 1826 aa26.51■■□□□ 1.83
CHD4-213ENST00000545584 UBR2Q8IWV8 1755 aa26.51■■□□□ 1.83
CHD4-213ENST00000545584 USPL1Q5W0Q7 1092 aa26.5■■□□□ 1.83
CHD4-213ENST00000545584 PXDNLA1KZ92 1463 aa26.49■■□□□ 1.83
CHD4-213ENST00000545584 COL15A1P39059 1388 aa26.49■■□□□ 1.83
CHD4-213ENST00000545584 CEMIPQ8WUJ3 1361 aa26.49■■□□□ 1.83
CHD4-213ENST00000545584 NEFMP07197 916 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms