RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 DPYDQ12882 1025 aa4.54□□□□□ -1.68
YBX3-214ENST00000544501 CDCA8Q53HL2 280 aa4.54□□□□□ -1.68
YBX3-214ENST00000544501 C6orf118Q5T5N4 469 aa4.54□□□□□ -1.68
YBX3-214ENST00000544501 FAM200AQ8TCP9 573 aa4.54□□□□□ -1.68
YBX3-214ENST00000544501 ZNF594Q96JF6 807 aaPredicted RBP4.54□□□□□ -1.68
YBX3-214ENST00000544501 ZFP42Q96MM3 310 aa4.54□□□□□ -1.68
YBX3-214ENST00000544501 ARXQ96QS3 562 aa4.54□□□□□ -1.68
YBX3-214ENST00000544501 NOVA2Q9UNW9 492 aaKnown RBP4.54□□□□□ -1.68
YBX3-214ENST00000544501 SOS2Q07890 1332 aaPredicted RBP4.53□□□□□ -1.68
YBX3-214ENST00000544501 TTLL8A6PVC2 850 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 MEN1O00255 615 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 LCE2BO14633 110 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 SMTNP53814 917 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 CENPCQ03188 943 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 PDE4CQ08493 712 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 MTFR1Q15390 333 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 SWI5Q1ZZU3 235 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.53□□□□□ -1.68
YBX3-214ENST00000544501 INSM2Q96T92 566 aaPredicted RBP4.53□□□□□ -1.68
YBX3-214ENST00000544501 GRIP2Q9C0E4 1043 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 POLMQ9NP87 494 aaPredicted RBP4.53□□□□□ -1.68
YBX3-214ENST00000544501 RAB6BQ9NRW1 208 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 ZNF358Q9NW07 568 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 DACH1Q9UI36 760 aa4.53□□□□□ -1.68
YBX3-214ENST00000544501 A6NJY4 79 aa4.52□□□□□ -1.69
YBX3-214ENST00000544501 SFI1A8K8P3 1242 aa4.52□□□□□ -1.69
YBX3-214ENST00000544501 CDK2AP1O14519 115 aa4.52□□□□□ -1.69
YBX3-214ENST00000544501 CSB-PGBD3P0DP91 1061 aa4.52□□□□□ -1.69
YBX3-214ENST00000544501 CTSOP43234 321 aaPredicted RBP4.52□□□□□ -1.69
YBX3-214ENST00000544501 WDR44Q5JSH3 913 aa4.52□□□□□ -1.69
YBX3-214ENST00000544501 TRIM47Q96LD4 638 aa4.52□□□□□ -1.69
YBX3-214ENST00000544501 FHDC1Q9C0D6 1143 aaPredicted RBP4.52□□□□□ -1.69
YBX3-214ENST00000544501 ZMIZ1Q9ULJ6 1067 aa4.52□□□□□ -1.69
YBX3-214ENST00000544501 SPATA31C2B4DYI2 1134 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 STAU1O95793 577 aaKnown RBP4.51□□□□□ -1.69
YBX3-214ENST00000544501 GTF2E1P29083 439 aaPredicted RBP4.51□□□□□ -1.69
YBX3-214ENST00000544501 EPHA4P54764 986 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 FOXK2Q01167 660 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 TLR1Q15399 786 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.51□□□□□ -1.697e-6■■□□□ 14.4
YBX3-214ENST00000544501 SLC27A3Q5K4L6 730 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 TMEM164Q5U3C3 297 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 FOXD4L5Q5VV16 416 aaPredicted RBP4.51□□□□□ -1.69
YBX3-214ENST00000544501 LYSMD3Q7Z3D4 306 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 PPARGC1BQ86YN6 1023 aaKnown RBP4.51□□□□□ -1.69
YBX3-214ENST00000544501 NBPF15Q8N660 670 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 GAS2L2Q8NHY3 880 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 RNF217Q8TC41 542 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 ZSCAN10Q96SZ4 725 aaPredicted RBP4.51□□□□□ -1.69
YBX3-214ENST00000544501 SCHIP1Q9P0W5 487 aaPredicted RBP4.51□□□□□ -1.69
YBX3-214ENST00000544501 SERTAD1Q9UHV2 236 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 USTQ9Y2C2 406 aa4.51□□□□□ -1.69
YBX3-214ENST00000544501 MAN1A2O60476 641 aa4.5□□□□□ -1.69
YBX3-214ENST00000544501 FAM69CQ0P6D2 419 aa4.5□□□□□ -1.69
YBX3-214ENST00000544501 GNASQ5JWF2 1037 aa4.5□□□□□ -1.69
YBX3-214ENST00000544501 TSEN2Q8NCE0 465 aaKnown RBP4.5□□□□□ -1.69
YBX3-214ENST00000544501 RHBDD1Q8TEB9 315 aa4.5□□□□□ -1.69
YBX3-214ENST00000544501 STK32AQ8WU08 396 aa4.5□□□□□ -1.69
YBX3-214ENST00000544501 GMPR2Q9P2T1 348 aaKnown RBP4.5□□□□□ -1.69
YBX3-214ENST00000544501 DNMT3LQ9UJW3 386 aa4.5□□□□□ -1.69
YBX3-214ENST00000544501 IQSEC3Q9UPP2 1182 aaPredicted RBP4.5□□□□□ -1.69
YBX3-214ENST00000544501 TMEM88BA6NKF7 163 aa4.49□□□□□ -1.69
YBX3-214ENST00000544501 C11orf95C9JLR9 678 aaPredicted RBP4.49□□□□□ -1.69
YBX3-214ENST00000544501 TMEM214Q6NUQ4 689 aaKnown RBP4.49□□□□□ -1.69
YBX3-214ENST00000544501 TNS4Q8IZW8 715 aa4.49□□□□□ -1.69
YBX3-214ENST00000544501 STAG2Q8N3U4 1231 aa4.49□□□□□ -1.69
YBX3-214ENST00000544501 CLP1Q92989 425 aaKnown RBP4.49□□□□□ -1.69
YBX3-214ENST00000544501 HINFPQ9BQA5 517 aa4.49□□□□□ -1.69
YBX3-214ENST00000544501 NIFKQ9BYG3 293 aaKnown RBP4.49□□□□□ -1.69
YBX3-214ENST00000544501 IGFBP4P22692 258 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 WEE1P30291 646 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 PSMA6P60900 246 aaKnown RBP4.48□□□□□ -1.69
YBX3-214ENST00000544501 TEAD4Q15561 434 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 NBPF10Q6P3W6 841 aaKnown RBP4.48□□□□□ -1.69
YBX3-214ENST00000544501 POTEAQ6S8J7 498 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 TAS1R3Q7RTX0 852 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 PRICKLE2Q7Z3G6 844 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 SLC9A9Q8IVB4 645 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 ZNF295-AS1Q8N0V1 137 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 RETREG2Q8NC44 543 aa4.48□□□□□ -1.69
YBX3-214ENST00000544501 FIGNL2A6NMB9 653 aa4.47□□□□□ -1.69
YBX3-214ENST00000544501 SNRPBP14678 240 aaKnown RBP4.47□□□□□ -1.69
YBX3-214ENST00000544501 HIRAP54198 1017 aaPredicted RBP4.47□□□□□ -1.69
YBX3-214ENST00000544501 POU4F2Q12837 409 aa4.47□□□□□ -1.69
YBX3-214ENST00000544501 C4orf17Q53FE4 359 aa4.47□□□□□ -1.69
YBX3-214ENST00000544501 C1orf216Q8TAB5 229 aa4.47□□□□□ -1.69
YBX3-214ENST00000544501 SCG3Q8WXD2 468 aaKnown RBP4.47□□□□□ -1.69
YBX3-214ENST00000544501 TSPAN10Q9H1Z9 355 aaPredicted RBP4.47□□□□□ -1.69
YBX3-214ENST00000544501 CHMP3Q9Y3E7 222 aa4.47□□□□□ -1.69
YBX3-214ENST00000544501 DYRK1BQ9Y463 629 aa4.47□□□□□ -1.69
YBX3-214ENST00000544501 ATAD2Q6PL18 1390 aa4.47□□□□□ -1.69
YBX3-214ENST00000544501 A0A1B0GTH6 734 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 SERTM1A2A2V5 107 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 POTECB2RU33 542 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 FOXO3O43524 673 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 C21orf2O43822 256 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 PPP1R12BO60237 982 aaPredicted RBP4.46□□□□□ -1.7
YBX3-214ENST00000544501 NOS2P35228 1153 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 PTSQ03393 145 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 OCLNQ16625 522 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms