RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 ADD1P35611 737 aaKnown RBP8.01□□□□□ -1.13
USP28-211ENST00000544272 CAPN12Q6ZSI9 719 aa8.01□□□□□ -1.13
USP28-211ENST00000544272 CYP2U1Q7Z449 544 aa8.01□□□□□ -1.13
USP28-211ENST00000544272 GAS2L2Q8NHY3 880 aa8.01□□□□□ -1.13
USP28-211ENST00000544272 GTF3C2Q8WUA4 911 aaPredicted RBP8.01□□□□□ -1.13
USP28-211ENST00000544272 DNMT3AQ9Y6K1 912 aaPredicted RBP8.01□□□□□ -1.13
USP28-211ENST00000544272 RBM47A0AV96 593 aaKnown RBP8□□□□□ -1.13
USP28-211ENST00000544272 H3BRB1 525 aa8□□□□□ -1.13
USP28-211ENST00000544272 ABL1P00519 1130 aa8□□□□□ -1.13
USP28-211ENST00000544272 MARSP56192 900 aaKnown RBP8□□□□□ -1.13
USP28-211ENST00000544272 FOXK2Q01167 660 aa8□□□□□ -1.13
USP28-211ENST00000544272 ZNF211Q13398 564 aaPredicted RBP8□□□□□ -1.13
USP28-211ENST00000544272 TNS4Q8IZW8 715 aa8□□□□□ -1.13
USP28-211ENST00000544272 MRGPRX2Q96LB1 330 aa8□□□□□ -1.13
USP28-211ENST00000544272 TUT1Q9H6E5 874 aaKnown RBP8□□□□□ -1.13
USP28-211ENST00000544272 ATAD2Q6PL18 1390 aa7.99□□□□□ -1.13
USP28-211ENST00000544272 SLC19A1P41440 591 aa7.99□□□□□ -1.13
USP28-211ENST00000544272 SF3B2Q13435 895 aaKnown RBP7.99□□□□□ -1.13
USP28-211ENST00000544272 MTFR1Q15390 333 aa7.99□□□□□ -1.13
USP28-211ENST00000544272 SCG3Q8WXD2 468 aaKnown RBP7.99□□□□□ -1.13
USP28-211ENST00000544272 MKNK1Q9BUB5 465 aa7.99□□□□□ -1.13
USP28-211ENST00000544272 BIN2Q9UBW5 565 aaPredicted RBP7.99□□□□□ -1.13
USP28-211ENST00000544272 NPR3P17342 541 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 ARHGAP4P98171 946 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 FKBP4Q02790 459 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP28-211ENST00000544272 GLYCTKQ8IVS8 523 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 STAG2Q8N3U4 1231 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 HELQQ8TDG4 1101 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 XAGE2Q96GT9 111 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 TSPAN10Q9H1Z9 355 aaPredicted RBP7.98□□□□□ -1.13
USP28-211ENST00000544272 ANO2Q9NQ90 1003 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 HRH3Q9Y5N1 445 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 EMILIN1Q9Y6C2 1016 aa7.98□□□□□ -1.13
USP28-211ENST00000544272 ESCO1Q5FWF5 840 aa7.97□□□□□ -1.13
USP28-211ENST00000544272 SPRYD7Q5W111 196 aa7.97□□□□□ -1.13
USP28-211ENST00000544272 PGPEP1Q9NXJ5 209 aa7.97□□□□□ -1.13
USP28-211ENST00000544272 SCHIP1Q9P0W5 487 aaPredicted RBP7.97□□□□□ -1.13
USP28-211ENST00000544272 SERTAD1Q9UHV2 236 aa7.97□□□□□ -1.13
USP28-211ENST00000544272 A6NJY4 79 aa7.96□□□□□ -1.14
USP28-211ENST00000544272 E9PSI1 815 aa7.96□□□□□ -1.14
USP28-211ENST00000544272 IL2RAP01589 272 aa7.96□□□□□ -1.14
USP28-211ENST00000544272 SMTNP53814 917 aa7.96□□□□□ -1.14
USP28-211ENST00000544272 POTEAQ6S8J7 498 aa7.96□□□□□ -1.14
USP28-211ENST00000544272 NPAS4Q8IUM7 802 aa7.96□□□□□ -1.14
USP28-211ENST00000544272 KDF1Q8NAX2 398 aaPredicted RBP7.96□□□□□ -1.14
USP28-211ENST00000544272 MYO15BQ96JP2 1530 aa7.95□□□□□ -1.14
USP28-211ENST00000544272 A0A1W2PRU2 124 aa7.95□□□□□ -1.14
USP28-211ENST00000544272 UNCXA6NJT0 531 aa7.95□□□□□ -1.14
USP28-211ENST00000544272 SLC9A9Q8IVB4 645 aa7.95□□□□□ -1.14
USP28-211ENST00000544272 C2orf49Q9BVC5 232 aaPredicted RBP7.95□□□□□ -1.14
USP28-211ENST00000544272 SHROOM4Q9ULL8 1493 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 ANKRD33BA6NCL7 494 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 ADH1AP07327 375 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 NNTQ13423 1086 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 MTMR3Q13615 1198 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 NAA30Q147X3 362 aaPredicted RBP7.94□□□□□ -1.14
USP28-211ENST00000544272 ZNF598Q86UK7 904 aaKnown RBP7.94□□□□□ -1.14
USP28-211ENST00000544272 KLF16Q9BXK1 252 aaPredicted RBP7.94□□□□□ -1.14
USP28-211ENST00000544272 ARHGEF10LQ9HCE6 1279 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 RAB6BQ9NRW1 208 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 PKD2L1Q9P0L9 805 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 DCTN4Q9UJW0 460 aa7.94□□□□□ -1.14
USP28-211ENST00000544272 IQSEC3Q9UPP2 1182 aaPredicted RBP7.94□□□□□ -1.14
USP28-211ENST00000544272 CDK2AP1O14519 115 aa7.93□□□□□ -1.14
USP28-211ENST00000544272 PPP1R12BO60237 982 aaPredicted RBP7.93□□□□□ -1.14
USP28-211ENST00000544272 Q6ZVU0 165 aa7.93□□□□□ -1.14
USP28-211ENST00000544272 ASB16Q96NS5 453 aa7.93□□□□□ -1.14
USP28-211ENST00000544272 ESYT1Q9BSJ8 1104 aa7.93□□□□□ -1.14
USP28-211ENST00000544272 PSMA6P60900 246 aaKnown RBP7.92□□□□□ -1.14
USP28-211ENST00000544272 CLN3Q13286 438 aa7.92□□□□□ -1.14
USP28-211ENST00000544272 TBCELQ5QJ74 424 aa7.92□□□□□ -1.14
USP28-211ENST00000544272 ZNF697Q5TEC3 545 aa7.92□□□□□ -1.14
USP28-211ENST00000544272 C16orf46Q6P387 395 aa7.92□□□□□ -1.14
USP28-211ENST00000544272 ZNF295-AS1Q8N0V1 137 aa7.92□□□□□ -1.14
USP28-211ENST00000544272 CNKSR1Q969H4 720 aa7.92□□□□□ -1.14
USP28-211ENST00000544272 SAP130Q9H0E3 1048 aa7.92□□□□□ -1.14
USP28-211ENST00000544272 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.92□□□□□ -1.14
USP28-211ENST00000544272 USP3Q9Y6I4 520 aa7.92□□□□□ -1.14
USP28-211ENST00000544272 FAM13AO94988 1023 aa7.91□□□□□ -1.14
USP28-211ENST00000544272 ALDH1A1P00352 501 aa7.91□□□□□ -1.14
USP28-211ENST00000544272 ZNF16P17020 682 aaPredicted RBP7.91□□□□□ -1.14
USP28-211ENST00000544272 SNIP1Q8TAD8 396 aaKnown RBP7.91□□□□□ -1.14
USP28-211ENST00000544272 CHMP7Q8WUX9 453 aaPredicted RBP7.91□□□□□ -1.14
USP28-211ENST00000544272 VTI1AQ96AJ9 217 aa7.91□□□□□ -1.14
USP28-211ENST00000544272 FHDC1Q9C0D6 1143 aaPredicted RBP7.91□□□□□ -1.14
USP28-211ENST00000544272 TNFRSF10BO14763 440 aa7.9□□□□□ -1.14
USP28-211ENST00000544272 MAPK1P28482 360 aa7.9□□□□□ -1.14
USP28-211ENST00000544272 HIRAP54198 1017 aaPredicted RBP7.9□□□□□ -1.14
USP28-211ENST00000544272 CBLBQ13191 982 aa7.9□□□□□ -1.14
USP28-211ENST00000544272 COL19A1Q14993 1142 aa7.9□□□□□ -1.14
USP28-211ENST00000544272 TLR1Q15399 786 aa7.9□□□□□ -1.14
USP28-211ENST00000544272 MYO19Q96H55 970 aa7.9□□□□□ -1.14
USP28-211ENST00000544272 BCL2L13Q9BXK5 485 aa7.9□□□□□ -1.14
USP28-211ENST00000544272 QTRT2Q9H974 415 aaKnown RBP7.9□□□□□ -1.14
USP28-211ENST00000544272 A0A0G2JS52 829 aa7.89□□□□□ -1.15
USP28-211ENST00000544272 PTGIRP43119 386 aa7.89□□□□□ -1.15
USP28-211ENST00000544272 TEAD4Q15561 434 aa7.89□□□□□ -1.15
USP28-211ENST00000544272 COX20Q5RI15 118 aa7.89□□□□□ -1.15
USP28-211ENST00000544272 FBXO33Q7Z6M2 555 aa7.89□□□□□ -1.15
USP28-211ENST00000544272 RGL4Q8IZJ4 473 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms