RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TMOD3Q9NYL9 352 aa24.79■■□□□ 1.56
CLSTN3-214ENST00000542663 MYH14Q7Z406 1995 aaKnown RBP24.78■■□□□ 1.56
CLSTN3-214ENST00000542663 GNPATO15228 680 aa24.77■■□□□ 1.56
CLSTN3-214ENST00000542663 PHKG2P15735 406 aa24.77■■□□□ 1.56
CLSTN3-214ENST00000542663 HSPA6P17066 643 aa24.76■■□□□ 1.55
CLSTN3-214ENST00000542663 ATP6V1AP38606 617 aa24.76■■□□□ 1.55
CLSTN3-214ENST00000542663 KDRP35968 1356 aa24.76■■□□□ 1.55
CLSTN3-214ENST00000542663 PXDNLA1KZ92 1463 aa24.76■■□□□ 1.55
CLSTN3-214ENST00000542663 IFNL2Q8IZJ0 200 aa24.75■■□□□ 1.55
CLSTN3-214ENST00000542663 ATG3Q9NT62 314 aa24.75■■□□□ 1.55
CLSTN3-214ENST00000542663 POLKQ9UBT6 870 aa24.75■■□□□ 1.55
CLSTN3-214ENST00000542663 ARFGEF1Q9Y6D6 1849 aa24.73■■□□□ 1.55
CLSTN3-214ENST00000542663 KIF3CO14782 793 aa24.71■■□□□ 1.55
CLSTN3-214ENST00000542663 MMP10P09238 476 aa24.71■■□□□ 1.55
CLSTN3-214ENST00000542663 SLC4A9Q96Q91 983 aa24.71■■□□□ 1.55
CLSTN3-214ENST00000542663 EIF4A2Q14240 407 aaKnown RBP24.7■■□□□ 1.54
CLSTN3-214ENST00000542663 PLEKHG2Q9H7P9 1386 aa24.69■■□□□ 1.54
CLSTN3-214ENST00000542663 C10orf71Q711Q0 1435 aa24.69■■□□□ 1.54
CLSTN3-214ENST00000542663 VIRMAQ69YN4 1812 aaKnown RBP24.68■■□□□ 1.54
CLSTN3-214ENST00000542663 TJP1Q07157 1748 aa24.66■■□□□ 1.54
CLSTN3-214ENST00000542663 SCN11AQ9UI33 1791 aa24.65■■□□□ 1.54
CLSTN3-214ENST00000542663 KDM6AO15550 1401 aaPredicted RBP24.65■■□□□ 1.54
CLSTN3-214ENST00000542663 TRAPPC3LQ5T215 181 aa24.65■■□□□ 1.54
CLSTN3-214ENST00000542663 RTCBQ9Y3I0 505 aaKnown RBP24.65■■□□□ 1.54
CLSTN3-214ENST00000542663 ERVV-2B6SEH9 535 aa24.64■■□□□ 1.54
CLSTN3-214ENST00000542663 TNNT2P45379 298 aaPredicted RBP24.64■■□□□ 1.54
CLSTN3-214ENST00000542663 TGFB2P61812 414 aa24.64■■□□□ 1.54
CLSTN3-214ENST00000542663 ARHGEF1Q92888 912 aaKnown RBP24.64■■□□□ 1.54
CLSTN3-214ENST00000542663 A0A0G2JLW4 131 aa24.63■■□□□ 1.53
CLSTN3-214ENST00000542663 RC3H1Q5TC82 1133 aaKnown RBP24.63■■□□□ 1.53
CLSTN3-214ENST00000542663 NLGN1Q8N2Q7 840 aa24.63■■□□□ 1.53
CLSTN3-214ENST00000542663 RBM42Q9BTD8 480 aaKnown RBP24.63■■□□□ 1.53
CLSTN3-214ENST00000542663 SBF1O95248 1867 aa24.63■■□□□ 1.53
CLSTN3-214ENST00000542663 ADAMTS7Q9UKP4 1686 aa24.62■■□□□ 1.53
CLSTN3-214ENST00000542663 GYS1P13807 737 aa24.62■■□□□ 1.53
CLSTN3-214ENST00000542663 BCS1LQ9Y276 419 aa24.62■■□□□ 1.53
CLSTN3-214ENST00000542663 CNTNAP4Q9C0A0 1308 aa24.61■■□□□ 1.53
CLSTN3-214ENST00000542663 DCAF5Q96JK2 942 aa24.61■■□□□ 1.53
CLSTN3-214ENST00000542663 WDR90Q96KV7 1748 aa24.61■■□□□ 1.53
CLSTN3-214ENST00000542663 ADRA2BP18089 450 aa24.6■■□□□ 1.53
CLSTN3-214ENST00000542663 RPS6KA4O75676 772 aa24.59■■□□□ 1.53
CLSTN3-214ENST00000542663 DPEP1P16444 411 aa24.59■■□□□ 1.53
CLSTN3-214ENST00000542663 CCDC87Q9NVE4 849 aa24.58■■□□□ 1.53
CLSTN3-214ENST00000542663 HSP90AB1P08238 724 aaKnown RBP24.57■■□□□ 1.52
CLSTN3-214ENST00000542663 KCNA3P22001 575 aa24.56■■□□□ 1.52
CLSTN3-214ENST00000542663 RFC4P35249 363 aa24.56■■□□□ 1.52
CLSTN3-214ENST00000542663 ARHGAP27Q6ZUM4 889 aa24.56■■□□□ 1.52
CLSTN3-214ENST00000542663 POLR3GLQ9BT43 218 aa24.56■■□□□ 1.52
CLSTN3-214ENST00000542663 AFDNP55196 1824 aaKnown RBP24.56■■□□□ 1.52
CLSTN3-214ENST00000542663 TOMM70O94826 608 aa24.55■■□□□ 1.52
CLSTN3-214ENST00000542663 PLEKHO1Q53GL0 409 aaPredicted RBP24.55■■□□□ 1.52
CLSTN3-214ENST00000542663 ZNF530Q6P9A1 599 aaPredicted RBP24.55■■□□□ 1.52
CLSTN3-214ENST00000542663 PARP3Q9Y6F1 533 aa24.55■■□□□ 1.52
CLSTN3-214ENST00000542663 FCHSD2O94868 740 aa24.54■■□□□ 1.52
CLSTN3-214ENST00000542663 CABP4P57796 275 aa24.54■■□□□ 1.52
CLSTN3-214ENST00000542663 NMRK2Q9NPI5 230 aa24.54■■□□□ 1.52
CLSTN3-214ENST00000542663 APLP1P51693 650 aa24.53■■□□□ 1.52
CLSTN3-214ENST00000542663 AEBP1Q8IUX7 1158 aa24.53■■□□□ 1.52
CLSTN3-214ENST00000542663 TIMELESSQ9UNS1 1208 aa24.53■■□□□ 1.52
CLSTN3-214ENST00000542663 AMOTQ4VCS5 1084 aa24.52■■□□□ 1.52
CLSTN3-214ENST00000542663 DNAJC5GQ8N7S2 189 aa24.52■■□□□ 1.52
CLSTN3-214ENST00000542663 TNRC6CQ9HCJ0 1690 aaKnown RBP24.52■■□□□ 1.52
CLSTN3-214ENST00000542663 PTCD1O75127 700 aaKnown RBP24.51■■□□□ 1.51
CLSTN3-214ENST00000542663 CRKLP46109 303 aaKnown RBP24.51■■□□□ 1.51
CLSTN3-214ENST00000542663 TRIM26Q12899 539 aaPredicted RBP24.51■■□□□ 1.51
CLSTN3-214ENST00000542663 SRP68Q9UHB9 627 aaKnown RBP24.51■■□□□ 1.51
CLSTN3-214ENST00000542663 DLEC1Q9Y238 1755 aa24.51■■□□□ 1.51
CLSTN3-214ENST00000542663 CCDC88AQ3V6T2 1871 aa24.51■■□□□ 1.51
CLSTN3-214ENST00000542663 MTHFSP49914 203 aa24.5■■□□□ 1.51
CLSTN3-214ENST00000542663 DDR1Q08345 913 aa24.49■■□□□ 1.51
CLSTN3-214ENST00000542663 FKBP8Q14318 412 aa24.49■■□□□ 1.51
CLSTN3-214ENST00000542663 NFATC2IPQ8NCF5 419 aa24.49■■□□□ 1.51
CLSTN3-214ENST00000542663 PANK3Q9H999 370 aa24.49■■□□□ 1.51
CLSTN3-214ENST00000542663 USP42Q9H9J4 1324 aaKnown RBP24.49■■□□□ 1.51
CLSTN3-214ENST00000542663 NRXN2Q9P2S2 1712 aa24.49■■□□□ 1.51
CLSTN3-214ENST00000542663 C9orf131Q5VYM1 1079 aa24.48■■□□□ 1.51
CLSTN3-214ENST00000542663 KCPQ6ZWJ8 1503 aa24.47■■□□□ 1.51
CLSTN3-214ENST00000542663 PIM2Q9P1W9 311 aa24.47■■□□□ 1.51
CLSTN3-214ENST00000542663 C1orf141Q5JVX7 400 aa24.46■■□□□ 1.51
CLSTN3-214ENST00000542663 INTS5Q6P9B9 1019 aaKnown RBP24.45■■□□□ 1.5
CLSTN3-214ENST00000542663 UBR2Q8IWV8 1755 aa24.44■■□□□ 1.5
CLSTN3-214ENST00000542663 CHRNA5P30532 468 aa24.43■■□□□ 1.5
CLSTN3-214ENST00000542663 DALRD3Q5D0E6 543 aaKnown RBP24.43■■□□□ 1.5
CLSTN3-214ENST00000542663 SULT6B1Q6IMI4 303 aa24.43■■□□□ 1.5
CLSTN3-214ENST00000542663 RBM46Q8TBY0 533 aaKnown RBP24.43■■□□□ 1.5
CLSTN3-214ENST00000542663 MRC1P22897 1456 aa24.43■■□□□ 1.5
CLSTN3-214ENST00000542663 POLRMTO00411 1230 aaKnown RBP24.42■■□□□ 1.5
CLSTN3-214ENST00000542663 TM4SF1P30408 202 aa24.42■■□□□ 1.5
CLSTN3-214ENST00000542663 TIAM2Q8IVF5 1701 aa24.41■■□□□ 1.5
CLSTN3-214ENST00000542663 HSPA5P11021 654 aaKnown RBP24.41■■□□□ 1.5
CLSTN3-214ENST00000542663 MORC1Q86VD1 984 aa24.41■■□□□ 1.5
CLSTN3-214ENST00000542663 IL13P35225 146 aa24.4■■□□□ 1.5
CLSTN3-214ENST00000542663 EIF4G2P78344 907 aaKnown RBP eCLIP24.39■■□□□ 1.49
CLSTN3-214ENST00000542663 RNF181Q9P0P0 153 aa24.39■■□□□ 1.49
CLSTN3-214ENST00000542663 CLSPNQ9HAW4 1339 aa24.38■■□□□ 1.49
CLSTN3-214ENST00000542663 HTRA3P83110 453 aa24.38■■□□□ 1.49
CLSTN3-214ENST00000542663 DNAJC10Q8IXB1 793 aa24.38■■□□□ 1.49
CLSTN3-214ENST00000542663 SOS1Q07889 1333 aaPredicted RBP24.37■■□□□ 1.49
CLSTN3-214ENST00000542663 ANKRD31Q8N7Z5 1873 aa24.37■■□□□ 1.49
CLSTN3-214ENST00000542663 USPL1Q5W0Q7 1092 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms