RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 MTHFSDQ2M296 383 aaKnown RBP15.83■□□□□ 0.12
SYNE1-238ENST00000540663 GAS2L2Q8NHY3 880 aa15.83■□□□□ 0.12
SYNE1-238ENST00000540663 AK7Q96M32 723 aa15.83■□□□□ 0.12
SYNE1-238ENST00000540663 SGIP1Q9BQI5 828 aa15.83■□□□□ 0.12
SYNE1-238ENST00000540663 MRC1P22897 1456 aa15.83■□□□□ 0.12
SYNE1-238ENST00000540663 ADAMTS7Q9UKP4 1686 aa15.82■□□□□ 0.12
SYNE1-238ENST00000540663 RNMTO43148 476 aaKnown RBP15.81■□□□□ 0.12
SYNE1-238ENST00000540663 ATP6V1AP38606 617 aa15.81■□□□□ 0.12
SYNE1-238ENST00000540663 COL24A1Q17RW2 1714 aa15.81■□□□□ 0.12
SYNE1-238ENST00000540663 NFATC2IPQ8NCF5 419 aa15.81■□□□□ 0.12
SYNE1-238ENST00000540663 RSPH6AQ9H0K4 717 aa15.81■□□□□ 0.12
SYNE1-238ENST00000540663 SLC52A2Q9HAB3 445 aa15.81■□□□□ 0.12
SYNE1-238ENST00000540663 MAP3K5Q99683 1374 aa15.8■□□□□ 0.12
SYNE1-238ENST00000540663 POLD1P28340 1107 aa15.8■□□□□ 0.12
SYNE1-238ENST00000540663 RALBP1Q15311 655 aa15.8■□□□□ 0.12
SYNE1-238ENST00000540663 LINC00116Q8NCU8 138 aa15.8■□□□□ 0.12
SYNE1-238ENST00000540663 MSH5O43196 834 aa15.79■□□□□ 0.12
SYNE1-238ENST00000540663 FCHSD2O94868 740 aa15.79■□□□□ 0.12
SYNE1-238ENST00000540663 U2AF1L5P0DN76 240 aaPredicted RBP15.79■□□□□ 0.12
SYNE1-238ENST00000540663 SSFA2P28290 1259 aa15.79■□□□□ 0.12
SYNE1-238ENST00000540663 U2AF1Q01081 240 aaKnown RBP eCLIP15.79■□□□□ 0.12
SYNE1-238ENST00000540663 DDX10Q13206 875 aaKnown RBP15.79■□□□□ 0.12
SYNE1-238ENST00000540663 ITPK1Q13572 414 aa15.79■□□□□ 0.12
SYNE1-238ENST00000540663 COL23A1Q86Y22 540 aaPredicted RBP15.79■□□□□ 0.12
SYNE1-238ENST00000540663 ARXQ96QS3 562 aa15.79■□□□□ 0.12
SYNE1-238ENST00000540663 RBM42Q9BTD8 480 aaKnown RBP15.79■□□□□ 0.12
SYNE1-238ENST00000540663 UBR3Q6ZT12 1888 aa15.78■□□□□ 0.12
SYNE1-238ENST00000540663 GNAT3A8MTJ3 354 aa15.78■□□□□ 0.12
SYNE1-238ENST00000540663 PRKAR2BP31323 418 aa15.78■□□□□ 0.12
SYNE1-238ENST00000540663 LGR6Q9HBX8 967 aa15.78■□□□□ 0.12
SYNE1-238ENST00000540663 CICQ96RK0 1608 aaPredicted RBP15.78■□□□□ 0.12
SYNE1-238ENST00000540663 RC3H1Q5TC82 1133 aaKnown RBP15.77■□□□□ 0.12
SYNE1-238ENST00000540663 SLC4A9Q96Q91 983 aa15.77■□□□□ 0.12
SYNE1-238ENST00000540663 CNTNAP4Q9C0A0 1308 aa15.76■□□□□ 0.11
SYNE1-238ENST00000540663 VIRMAQ69YN4 1812 aaKnown RBP15.76■□□□□ 0.11
SYNE1-238ENST00000540663 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.76■□□□□ 0.11
SYNE1-238ENST00000540663 GNPATO15228 680 aa15.76■□□□□ 0.11
SYNE1-238ENST00000540663 PTCD1O75127 700 aaKnown RBP15.76■□□□□ 0.11
SYNE1-238ENST00000540663 COL5A3P25940 1745 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-238ENST00000540663 PHACTR3Q96KR7 559 aa15.75■□□□□ 0.11
SYNE1-238ENST00000540663 DCAF8L1A6NGE4 600 aa15.74■□□□□ 0.11
SYNE1-238ENST00000540663 ADRA2BP18089 450 aa15.74■□□□□ 0.11
SYNE1-238ENST00000540663 TEFQ10587 303 aa15.74■□□□□ 0.11
SYNE1-238ENST00000540663 FHDC1Q9C0D6 1143 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-238ENST00000540663 RTCBQ9Y3I0 505 aaKnown RBP15.74■□□□□ 0.11
SYNE1-238ENST00000540663 CEMIPQ8WUJ3 1361 aa15.74■□□□□ 0.11
SYNE1-238ENST00000540663 MYBBP1AQ9BQG0 1328 aaKnown RBP15.73■□□□□ 0.11
SYNE1-238ENST00000540663 PHF14O94880 888 aa15.73■□□□□ 0.11
SYNE1-238ENST00000540663 NEFMP07197 916 aa15.73■□□□□ 0.11
SYNE1-238ENST00000540663 AMIGO3Q86WK7 504 aa15.73■□□□□ 0.11
SYNE1-238ENST00000540663 PNNQ9H307 717 aaKnown RBP15.73■□□□□ 0.11
SYNE1-238ENST00000540663 TJP1Q07157 1748 aa15.72■□□□□ 0.11
SYNE1-238ENST00000540663 VSIG10Q8N0Z9 540 aa15.72■□□□□ 0.11
SYNE1-238ENST00000540663 IL17REQ8NFR9 667 aa15.72■□□□□ 0.11
SYNE1-238ENST00000540663 SYT17Q9BSW7 474 aa15.72■□□□□ 0.11
SYNE1-238ENST00000540663 KCPQ6ZWJ8 1503 aa15.72■□□□□ 0.11
SYNE1-238ENST00000540663 HTATSF1O43719 755 aaKnown RBP15.71■□□□□ 0.11
SYNE1-238ENST00000540663 RPS6KA4O75676 772 aa15.71■□□□□ 0.11
SYNE1-238ENST00000540663 TTC5Q8N0Z6 440 aa15.71■□□□□ 0.11
SYNE1-238ENST00000540663 RTF1Q92541 710 aaKnown RBP15.71■□□□□ 0.11
SYNE1-238ENST00000540663 SIPA1L3O60292 1781 aaPredicted RBP15.71■□□□□ 0.11
SYNE1-238ENST00000540663 UBR2Q8IWV8 1755 aa15.7■□□□□ 0.1
SYNE1-238ENST00000540663 CRKLP46109 303 aaKnown RBP15.7■□□□□ 0.1
SYNE1-238ENST00000540663 SLC39A6Q13433 755 aa15.7■□□□□ 0.1
SYNE1-238ENST00000540663 TRAPPC3LQ5T215 181 aa15.7■□□□□ 0.1
SYNE1-238ENST00000540663 MSL1Q68DK7 614 aa15.7■□□□□ 0.1
SYNE1-238ENST00000540663 ZNF790Q6PG37 636 aa15.68■□□□□ 0.1
SYNE1-238ENST00000540663 DNAJC10Q8IXB1 793 aa15.68■□□□□ 0.1
SYNE1-238ENST00000540663 CCDC87Q9NVE4 849 aa15.68■□□□□ 0.1
SYNE1-238ENST00000540663 MYH14Q7Z406 1995 aaKnown RBP15.67■□□□□ 0.1
SYNE1-238ENST00000540663 CYP19A1P11511 503 aaPredicted RBP15.67■□□□□ 0.1
SYNE1-238ENST00000540663 RFC4P35249 363 aa15.67■□□□□ 0.1
SYNE1-238ENST00000540663 SMIM5Q71RC9 77 aa15.67■□□□□ 0.1
SYNE1-238ENST00000540663 ARHGEF1Q92888 912 aaKnown RBP15.67■□□□□ 0.1
SYNE1-238ENST00000540663 PLEKHF1Q96S99 279 aa15.67■□□□□ 0.1
SYNE1-238ENST00000540663 MAPK8IP3Q9UPT6 1336 aa15.67■□□□□ 0.1
SYNE1-238ENST00000540663 NFE2L2Q16236 605 aa15.66■□□□□ 0.1
SYNE1-238ENST00000540663 INTS5Q6P9B9 1019 aaKnown RBP15.66■□□□□ 0.1
SYNE1-238ENST00000540663 NLGN1Q8N2Q7 840 aa15.66■□□□□ 0.1
SYNE1-238ENST00000540663 TEX13AQ9BXU3 409 aaPredicted RBP15.66■□□□□ 0.1
SYNE1-238ENST00000540663 PRKRIP1Q9H875 184 aaPredicted RBP15.66■□□□□ 0.1
SYNE1-238ENST00000540663 CD2APQ9Y5K6 639 aa15.66■□□□□ 0.1
SYNE1-238ENST00000540663 HEG1Q9ULI3 1381 aa15.65■□□□□ 0.1
SYNE1-238ENST00000540663 BTBD11A6QL63 1104 aa15.65■□□□□ 0.1
SYNE1-238ENST00000540663 STARD3NLO95772 234 aa15.65■□□□□ 0.1
SYNE1-238ENST00000540663 MCM10Q7L590 875 aa15.65■□□□□ 0.1
SYNE1-238ENST00000540663 KLHL34Q8N239 644 aa15.65■□□□□ 0.1
SYNE1-238ENST00000540663 FMNL2Q96PY5 1086 aa15.65■□□□□ 0.1
SYNE1-238ENST00000540663 C4AP0C0L4 1744 aa15.64■□□□□ 0.09
SYNE1-238ENST00000540663 ZNF496Q96IT1 587 aaPredicted RBP15.64■□□□□ 0.09
SYNE1-238ENST00000540663 SOS1Q07889 1333 aaPredicted RBP15.64■□□□□ 0.09
SYNE1-238ENST00000540663 GYS1P13807 737 aa15.63■□□□□ 0.09
SYNE1-238ENST00000540663 USP42Q9H9J4 1324 aaKnown RBP15.63■□□□□ 0.09
SYNE1-238ENST00000540663 MMP10P09238 476 aa15.62■□□□□ 0.09
SYNE1-238ENST00000540663 ZNF316A6NFI3 1004 aaPredicted RBP15.61■□□□□ 0.09
SYNE1-238ENST00000540663 DCTN1Q14203 1278 aa15.61■□□□□ 0.09
SYNE1-238ENST00000540663 WDR43Q15061 677 aaKnown RBP eCLIP15.61■□□□□ 0.09
SYNE1-238ENST00000540663 TAF7Q15545 349 aaPredicted RBP15.61■□□□□ 0.09
SYNE1-238ENST00000540663 NLGN2Q8NFZ4 835 aa15.61■□□□□ 0.09
SYNE1-238ENST00000540663 PNISRQ8TF01 805 aaKnown RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms