RNA–Protein interactions for RNA: ENST00000540590.1

LMO3-223, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 565 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-223ENST00000540590 ZNF853P0CG23 659 aa16.27■□□□□ 0.2
LMO3-223ENST00000540590 DDX54Q8TDD1 881 aaKnown RBP16.27■□□□□ 0.2
LMO3-223ENST00000540590 MYH16Q9H6N6 1097 aa16.27■□□□□ 0.2
LMO3-223ENST00000540590 IFT57Q9NWB7 429 aa16.27■□□□□ 0.2
LMO3-223ENST00000540590 KDM3BQ7LBC6 1761 aa16.27■□□□□ 0.2
LMO3-223ENST00000540590 FANCIQ9NVI1 1328 aa16.26■□□□□ 0.19
LMO3-223ENST00000540590 GNAI1P63096 354 aa16.26■□□□□ 0.19
LMO3-223ENST00000540590 ZNF772Q68DY9 489 aaPredicted RBP16.26■□□□□ 0.19
LMO3-223ENST00000540590 TSR2Q969E8 191 aaKnown RBP16.26■□□□□ 0.19
LMO3-223ENST00000540590 CFAP44Q96MT7 982 aa16.26■□□□□ 0.19
LMO3-223ENST00000540590 QTRT2Q9H974 415 aaKnown RBP16.26■□□□□ 0.19
LMO3-223ENST00000540590 LAS1LQ9Y4W2 734 aaKnown RBP16.26■□□□□ 0.19
LMO3-223ENST00000540590 MRC1P22897 1456 aa16.26■□□□□ 0.19
LMO3-223ENST00000540590 ITGB4P16144 1822 aa16.25■□□□□ 0.19
LMO3-223ENST00000540590 NKX1-1Q15270 411 aaPredicted RBP16.25■□□□□ 0.19
LMO3-223ENST00000540590 DDB1Q16531 1140 aa16.25■□□□□ 0.19
LMO3-223ENST00000540590 DCAF5Q96JK2 942 aa16.25■□□□□ 0.19
LMO3-223ENST00000540590 BABAM1Q9NWV8 329 aa16.25■□□□□ 0.19
LMO3-223ENST00000540590 CHL1O00533 1208 aa16.24■□□□□ 0.19
LMO3-223ENST00000540590 TEFQ10587 303 aa16.24■□□□□ 0.19
LMO3-223ENST00000540590 MBIPQ9NS73 344 aa16.24■□□□□ 0.19
LMO3-223ENST00000540590 DOT1LQ8TEK3 1739 aa16.24■□□□□ 0.19
LMO3-223ENST00000540590 TAF7Q15545 349 aaPredicted RBP16.23■□□□□ 0.19
LMO3-223ENST00000540590 KAT6BQ8WYB5 2073 aa16.23■□□□□ 0.19
LMO3-223ENST00000540590 BRWD3Q6RI45 1802 aa16.22■□□□□ 0.19
LMO3-223ENST00000540590 A0A0G2JS52 829 aa16.21■□□□□ 0.19
LMO3-223ENST00000540590 ONECUT3O60422 494 aaPredicted RBP16.21■□□□□ 0.19
LMO3-223ENST00000540590 MYT1Q01538 1121 aa16.21■□□□□ 0.19
LMO3-223ENST00000540590 MARCH10Q8NA82 808 aaPredicted RBP16.21■□□□□ 0.19
LMO3-223ENST00000540590 SLC52A2Q9HAB3 445 aa16.21■□□□□ 0.19
LMO3-223ENST00000540590 MIS18AQ9NYP9 233 aa16.21■□□□□ 0.19
LMO3-223ENST00000540590 EXOSC9Q06265 439 aaKnown RBP16.2■□□□□ 0.18
LMO3-223ENST00000540590 TSPYL4Q9UJ04 414 aa16.2■□□□□ 0.18
LMO3-223ENST00000540590 PAPPAQ13219 1627 aa16.19■□□□□ 0.18
LMO3-223ENST00000540590 ERVV-2B6SEH9 535 aa16.19■□□□□ 0.18
LMO3-223ENST00000540590 ILDR1Q86SU0 546 aaPredicted RBP16.19■□□□□ 0.18
LMO3-223ENST00000540590 CT47B1P0C2W7 299 aaPredicted RBP16.18■□□□□ 0.18
LMO3-223ENST00000540590 CABP4P57796 275 aa16.18■□□□□ 0.18
LMO3-223ENST00000540590 RBM6P78332 1123 aaKnown RBP16.18■□□□□ 0.18
LMO3-223ENST00000540590 SEPT12Q8IYM1 358 aa16.18■□□□□ 0.18
LMO3-223ENST00000540590 NFATC2IPQ8NCF5 419 aa16.18■□□□□ 0.18
LMO3-223ENST00000540590 RGS17Q9UGC6 210 aaPredicted RBP16.18■□□□□ 0.18
LMO3-223ENST00000540590 ZBTB12Q9Y330 459 aaPredicted RBP16.18■□□□□ 0.18
LMO3-223ENST00000540590 BCL9O00512 1426 aa16.18■□□□□ 0.18
LMO3-223ENST00000540590 BTBD11A6QL63 1104 aa16.17■□□□□ 0.18
LMO3-223ENST00000540590 FOXD4L1Q9NU39 408 aa16.17■□□□□ 0.18
LMO3-223ENST00000540590 UBR2Q8IWV8 1755 aa16.17■□□□□ 0.18
LMO3-223ENST00000540590 SOS1Q07889 1333 aaPredicted RBP16.17■□□□□ 0.18
LMO3-223ENST00000540590 CHMP4AQ9BY43 222 aa16.16■□□□□ 0.18
LMO3-223ENST00000540590 RCAN3Q9UKA8 241 aa16.16■□□□□ 0.18
LMO3-223ENST00000540590 SBF2Q86WG5 1849 aa16.15■□□□□ 0.18
LMO3-223ENST00000540590 KCNQ3O43525 872 aa16.15■□□□□ 0.18
LMO3-223ENST00000540590 KRT24Q2M2I5 525 aa16.15■□□□□ 0.18
LMO3-223ENST00000540590 TSPYL6Q8N831 410 aa16.15■□□□□ 0.18
LMO3-223ENST00000540590 C8orf58Q8NAV2 365 aa16.15■□□□□ 0.18
LMO3-223ENST00000540590 ZNF428Q96B54 188 aa16.15■□□□□ 0.18
LMO3-223ENST00000540590 AKT1S1Q96B36 256 aa16.14■□□□□ 0.17
LMO3-223ENST00000540590 TMOD3Q9NYL9 352 aa16.14■□□□□ 0.17
LMO3-223ENST00000540590 EIF4A1P60842 406 aaKnown RBP16.13■□□□□ 0.17
LMO3-223ENST00000540590 SLC39A6Q13433 755 aa16.13■□□□□ 0.17
LMO3-223ENST00000540590 TWISTNBQ3B726 338 aaPredicted RBP16.13■□□□□ 0.17
LMO3-223ENST00000540590 POTEAQ6S8J7 498 aa16.13■□□□□ 0.17
LMO3-223ENST00000540590 C5P01031 1676 aa16.13■□□□□ 0.17
LMO3-223ENST00000540590 NHSQ6T4R5 1651 aa16.13■□□□□ 0.17
LMO3-223ENST00000540590 ELL2O00472 640 aaPredicted RBP16.12■□□□□ 0.17
LMO3-223ENST00000540590 VAMP4O75379 141 aa16.12■□□□□ 0.17
LMO3-223ENST00000540590 RXRBP28702 533 aa16.12■□□□□ 0.17
LMO3-223ENST00000540590 ZNF790Q6PG37 636 aa16.12■□□□□ 0.17
LMO3-223ENST00000540590 PIGBQ92521 554 aa16.12■□□□□ 0.17
LMO3-223ENST00000540590 SUPT16HQ9Y5B9 1047 aaKnown RBP16.12■□□□□ 0.17
LMO3-223ENST00000540590 KCPQ6ZWJ8 1503 aa16.11■□□□□ 0.17
LMO3-223ENST00000540590 PRIM1P49642 420 aaKnown RBP16.11■□□□□ 0.17
LMO3-223ENST00000540590 ACSBG1Q96GR2 724 aa16.11■□□□□ 0.17
LMO3-223ENST00000540590 HEG1Q9ULI3 1381 aa16.11■□□□□ 0.17
LMO3-223ENST00000540590 RGS12O14924 1447 aa16.11■□□□□ 0.17
LMO3-223ENST00000540590 LAMB4A4D0S4 1761 aa16.1■□□□□ 0.17
LMO3-223ENST00000540590 RARSP54136 660 aaKnown RBP16.1■□□□□ 0.17
LMO3-223ENST00000540590 FAM182BQ5T319 152 aa16.1■□□□□ 0.17
LMO3-223ENST00000540590 SYTL4Q96C24 671 aaPredicted RBP16.1■□□□□ 0.17
LMO3-223ENST00000540590 ATF5Q9Y2D1 282 aaPredicted RBP16.1■□□□□ 0.17
LMO3-223ENST00000540590 BTAF1O14981 1849 aa16.1■□□□□ 0.17
LMO3-223ENST00000540590 CACNA1FO60840 1977 aa16.09■□□□□ 0.17
LMO3-223ENST00000540590 TTC5Q8N0Z6 440 aa16.09■□□□□ 0.17
LMO3-223ENST00000540590 HOXB7P09629 217 aa16.08■□□□□ 0.16
LMO3-223ENST00000540590 KRT27Q7Z3Y8 459 aa16.08■□□□□ 0.16
LMO3-223ENST00000540590 ZNF496Q96IT1 587 aaPredicted RBP16.08■□□□□ 0.16
LMO3-223ENST00000540590 RNF123Q5XPI4 1314 aa16.08■□□□□ 0.16
LMO3-223ENST00000540590 KCNQ2O43526 872 aa16.07■□□□□ 0.16
LMO3-223ENST00000540590 BCAR3O75815 825 aa16.07■□□□□ 0.16
LMO3-223ENST00000540590 SSH1Q8WYL5 1049 aa16.07■□□□□ 0.16
LMO3-223ENST00000540590 BCL2L13Q9BXK5 485 aa16.07■□□□□ 0.16
LMO3-223ENST00000540590 ATG3Q9NT62 314 aa16.07■□□□□ 0.16
LMO3-223ENST00000540590 ASAP1Q9ULH1 1129 aa16.07■□□□□ 0.16
LMO3-223ENST00000540590 GIGYF1O75420 1035 aaPredicted RBP16.06■□□□□ 0.16
LMO3-223ENST00000540590 ALDH1L2Q3SY69 923 aa16.06■□□□□ 0.16
LMO3-223ENST00000540590 FMNL2Q96PY5 1086 aa16.06■□□□□ 0.16
LMO3-223ENST00000540590 TCERG1O14776 1098 aaKnown RBP16.05■□□□□ 0.16
LMO3-223ENST00000540590 HMGB2P26583 209 aaKnown RBP16.05■□□□□ 0.16
LMO3-223ENST00000540590 RRP1P56182 461 aaKnown RBP16.05■□□□□ 0.16
LMO3-223ENST00000540590 SMC4Q9NTJ3 1288 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms