RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	EIF5	P55010	431 aa	Known RBP	10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	LACTB	P83111	547 aa	Predicted RBP	10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	CEP128	Q6ZU80	1094 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	AFAP1L1	Q8TED9	768 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	TBC1D32	Q96NH3	1257 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	ZNF165	P49910	485 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	PLPPR3	Q6T4P5	718 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	RALYL	Q86SE5	291 aa	Known RBP	10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	MRFAP1L1	Q96HT8	127 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	DDX19A	Q9NUU7	478 aa	Known RBP	10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	STK3	Q13188	491 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	STIM1	Q13586	685 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	HSP90AB4P	Q58FF6	505 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	ADAMTS8	Q9UP79	889 aa		10.16	□□□□□ -0.78
YBX3-208	ENST00000540447	SCAND2P	Q9GZW5	306 aa	Predicted RBP	10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	JRKL	Q9Y4A0	524 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	SH2D4B	Q5SQS7	431 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	FAM114A2	Q9NRY5	505 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	ARHGAP25	P42331	645 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	BIRC2	Q13490	618 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	VCX	Q9H320	206 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	STAMBP	O95630	424 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	ATP2B1	P20020	1258 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	TUBB4B	P68371	445 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	PIBF1	Q8WXW3	757 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	STAC3	Q96MF2	364 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	GDPD2	Q9HCC8	539 aa		10.15	□□□□□ -0.78
YBX3-208	ENST00000540447	PLEKHH1	Q9ULM0	1364 aa		10.15	□□□□□ -0.79
YBX3-208	ENST00000540447	ERICH2	A1L162	156 aa		10.15	□□□□□ -0.79
YBX3-208	ENST00000540447	DHX16	O60231	1041 aa	Known RBP	10.15	□□□□□ -0.79
YBX3-208	ENST00000540447	CAVIN2	O95810	425 aa		10.15	□□□□□ -0.79
YBX3-208	ENST00000540447	STX1A	Q16623	288 aa		10.15	□□□□□ -0.79
YBX3-208	ENST00000540447	CTCFL	Q8NI51	663 aa	Predicted RBP	10.15	□□□□□ -0.79
YBX3-208	ENST00000540447	PPP1R12C	Q9BZL4	782 aa		10.15	□□□□□ -0.79
YBX3-208	ENST00000540447	XBP1	P17861	261 aa		10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	OAS2	P29728	719 aa	Known RBP	10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	CKAP4	Q07065	602 aa	Known RBP	10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	PPFIBP2	Q8ND30	876 aa		10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	SECISBP2L	Q93073	1101 aa	Known RBP	10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	RNF216	Q9NWF9	866 aa	Predicted RBP	10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	ATP11A	P98196	1134 aa		10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	ZMAT2	Q96NC0	199 aa	Known RBP	10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC196	A0A1B0GTZ2	297 aa		10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	UBE2H	P62256	183 aa		10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC178	Q5BJE1	867 aa		10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	ZNF365	Q70YC5	407 aa		10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	CPLX4	Q7Z7G2	160 aa		10.14	□□□□□ -0.79
YBX3-208	ENST00000540447	NEK11	Q8NG66	645 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	NDUFAB1	O14561	156 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	KDM4A	O75164	1064 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	SOGA1	O94964	1423 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	PTGS1	P23219	599 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	RIPK4	P57078	832 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	ICE2	Q659A1	982 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	GIMAP6	Q6P9H5	292 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	ELF2	Q15723	593 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	PDRG1	Q9NUG6	133 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	NUTM1	Q86Y26	1132 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	LOC102724159	A0A0B4J2E5	919 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	USO1	O60763	962 aa	Known RBP	10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	PWP2	Q15269	919 aa	Known RBP	10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	SYT10	Q6XYQ8	523 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	PAF1	Q8N7H5	531 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	CEP120	Q8N960	986 aa		10.13	□□□□□ -0.79
YBX3-208	ENST00000540447	FERMT3	Q86UX7	667 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	TSC1	Q92574	1164 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	TANGO6	Q9C0B7	1094 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	FYB1	O15117	783 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	PFDN1	O60925	122 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	TUBB	P07437	444 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	RFC1	P35251	1148 aa	Predicted RBP	10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	MVP	Q14764	893 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	PNISR	Q8TF01	805 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	DDX27	Q96GQ7	796 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	C1orf115	Q9H7X2	142 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	KIF1C	O43896	1103 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	GOLGA5	Q8TBA6	731 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC184	Q52MB2	194 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	FAM200A	Q8TCP9	573 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	CPLX3	Q8WVH0	158 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	TRIM4	Q9C037	500 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	STIM2	Q9P246	746 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	EVC	P57679	992 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	PIP4K2B	P78356	416 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	LRRC23	Q53EV4	343 aa	Predicted RBP	10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	ARFGAP2	Q8N6H7	521 aa		10.12	□□□□□ -0.79
YBX3-208	ENST00000540447	FRMD3	A2A2Y4	597 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	MATR3	P43243	847 aa	Known RBP eCLIP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	E2F4	Q16254	413 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	TSNAXIP1	Q2TAA8	658 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	CEP85L	Q5SZL2	805 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	RRP15	Q9Y3B9	282 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	NOL3	O60936	208 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	MXRA7	P84157	204 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	PDE1C	Q14123	709 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	NUCKS1	Q9H1E3	243 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	KIF27	Q86VH2	1401 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	HIP1	O00291	1037 aa		10.11	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 86 ms