RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 C16orf71Q8IYS4 520 aaPredicted RBP13.16□□□□□ -0.3
CLIP1-213ENST00000540338 DIAPH3Q9NSV4 1193 aa13.16□□□□□ -0.3
CLIP1-213ENST00000540338 RUFY2Q8WXA3 655 aa13.16□□□□□ -0.3
CLIP1-213ENST00000540338 MSH6P52701 1360 aa13.16□□□□□ -0.3
CLIP1-213ENST00000540338 USP31Q70CQ4 1352 aa13.16□□□□□ -0.3
CLIP1-213ENST00000540338 MX1P20591 662 aa13.15□□□□□ -0.3
CLIP1-213ENST00000540338 SKOR2Q2VWA4 1001 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-213ENST00000540338 IL1RAPL2Q9NP60 686 aa13.15□□□□□ -0.3
CLIP1-213ENST00000540338 SHPRHQ149N8 1683 aa13.15□□□□□ -0.3
CLIP1-213ENST00000540338 PTCH1Q13635 1447 aa13.15□□□□□ -0.3
CLIP1-213ENST00000540338 RTN4Q9NQC3 1192 aaKnown RBP13.15□□□□□ -0.3
CLIP1-213ENST00000540338 CHMP3Q9Y3E7 222 aa13.15□□□□□ -0.3
CLIP1-213ENST00000540338 TRIM44Q96DX7 344 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-213ENST00000540338 CIZ1Q9ULV3 898 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-213ENST00000540338 ZNF330Q9Y3S2 320 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-213ENST00000540338 RAB11FIP3O75154 756 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 NUCB2P80303 420 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 NBPF6Q5VWK0 638 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 IL17REQ8NFR9 667 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 NBPF4Q96M43 638 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 PI4KAP2A4QPH2 592 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 ATP8B2P98198 1209 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 PI4KAP1Q8N8J0 262 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 OVOS2A0A0J9YW53 1432 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 OVOS2Q6IE36 1432 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 MCM4P33991 863 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 CNTROBQ8N137 903 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 PTPRUQ92729 1446 aa13.14□□□□□ -0.31
CLIP1-213ENST00000540338 ADGRB2O60241 1585 aa13.13□□□□□ -0.31
CLIP1-213ENST00000540338 SDSP20132 328 aa13.13□□□□□ -0.31
CLIP1-213ENST00000540338 CADPS2Q86UW7 1296 aa13.13□□□□□ -0.31
CLIP1-213ENST00000540338 ERC1Q8IUD2 1116 aa13.13□□□□□ -0.31
CLIP1-213ENST00000540338 KIF1BPQ96EK5 621 aa13.13□□□□□ -0.31
CLIP1-213ENST00000540338 CHPF2Q9P2E5 772 aa13.13□□□□□ -0.31
CLIP1-213ENST00000540338 NEK4P51957 841 aa13.12□□□□□ -0.31
CLIP1-213ENST00000540338 TRAK2O60296 914 aa13.12□□□□□ -0.31
CLIP1-213ENST00000540338 RBM25P49756 843 aaKnown RBP13.12□□□□□ -0.31
CLIP1-213ENST00000540338 CABP4P57796 275 aa13.12□□□□□ -0.31
CLIP1-213ENST00000540338 ANXA1P04083 346 aa13.12□□□□□ -0.31
CLIP1-213ENST00000540338 PDE1AP54750 535 aa13.12□□□□□ -0.31
CLIP1-213ENST00000540338 HYPKQ9NX55 129 aa13.12□□□□□ -0.31
CLIP1-213ENST00000540338 SNX21Q969T3 373 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 LGR6Q9HBX8 967 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 PRDM11Q9NQV5 511 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 KIF20BQ96Q89 1820 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 MYL6BP14649 208 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 PPP1R42Q7Z4L9 355 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 SIRT2Q8IXJ6 389 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 DDX49Q9Y6V7 483 aaKnown RBP13.11□□□□□ -0.31
CLIP1-213ENST00000540338 NUTM1Q86Y26 1132 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 RTL1A6NKG5 1358 aa13.11□□□□□ -0.31
CLIP1-213ENST00000540338 MCM2P49736 904 aa13.1□□□□□ -0.31
CLIP1-213ENST00000540338 FGD1P98174 961 aa13.1□□□□□ -0.31
CLIP1-213ENST00000540338 PHAXQ9H814 394 aaKnown RBP13.1□□□□□ -0.31
CLIP1-213ENST00000540338 HOXB7P09629 217 aa13.1□□□□□ -0.31
CLIP1-213ENST00000540338 USP19O94966 1318 aa13.1□□□□□ -0.31
CLIP1-213ENST00000540338 RNMTO43148 476 aaKnown RBP13.1□□□□□ -0.31
CLIP1-213ENST00000540338 TOM1L2Q6ZVM7 507 aa13.1□□□□□ -0.31
CLIP1-213ENST00000540338 MAP3K2Q9Y2U5 619 aa13.09□□□□□ -0.31
CLIP1-213ENST00000540338 NPHP3Q7Z494 1330 aa13.09□□□□□ -0.31
CLIP1-213ENST00000540338 IFNL2Q8IZJ0 200 aa13.09□□□□□ -0.31
CLIP1-213ENST00000540338 FOXD4L5Q5VV16 416 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-213ENST00000540338 LARP1Q6PKG0 1096 aaKnown RBP13.09□□□□□ -0.31
CLIP1-213ENST00000540338 OTUD7AQ8TE49 926 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-213ENST00000540338 FOXD4L4Q8WXT5 416 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-213ENST00000540338 NPHP4O75161 1426 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-213ENST00000540338 CWC22Q9HCG8 908 aaKnown RBP13.08□□□□□ -0.31
CLIP1-213ENST00000540338 MAP2P11137 1827 aaKnown RBP13.08□□□□□ -0.32
CLIP1-213ENST00000540338 MAP4K4O95819 1239 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-213ENST00000540338 ZKSCAN1P17029 563 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-213ENST00000540338 TSHZ3Q63HK5 1081 aa13.08□□□□□ -0.32
CLIP1-213ENST00000540338 EIF4A1P60842 406 aaKnown RBP13.08□□□□□ -0.32
CLIP1-213ENST00000540338 TPRNQ4KMQ1 711 aa13.08□□□□□ -0.32
CLIP1-213ENST00000540338 CHRNA2Q15822 529 aa13.07□□□□□ -0.32
CLIP1-213ENST00000540338 ALDH1L1O75891 902 aa13.06□□□□□ -0.32
CLIP1-213ENST00000540338 KSR2Q6VAB6 950 aa13.06□□□□□ -0.32
CLIP1-213ENST00000540338 ARHGEF25Q86VW2 580 aa13.06□□□□□ -0.32
CLIP1-213ENST00000540338 RHPN1Q8TCX5 695 aa13.06□□□□□ -0.32
CLIP1-213ENST00000540338 TAF7LQ5H9L4 462 aa13.06□□□□□ -0.32
CLIP1-213ENST00000540338 GORABQ5T7V8 394 aa13.06□□□□□ -0.32
CLIP1-213ENST00000540338 GLRX3O76003 335 aaKnown RBP13.06□□□□□ -0.32
CLIP1-213ENST00000540338 RBM42Q9BTD8 480 aaKnown RBP13.06□□□□□ -0.32
CLIP1-213ENST00000540338 STRN4Q9NRL3 753 aa13.06□□□□□ -0.32
CLIP1-213ENST00000540338 AACSQ86V21 672 aa13.06□□□□□ -0.32
CLIP1-213ENST00000540338 ITSN1Q15811 1721 aa13.05□□□□□ -0.32
CLIP1-213ENST00000540338 MCTP1Q6DN14 999 aa13.05□□□□□ -0.32
CLIP1-213ENST00000540338 SIL1Q9H173 461 aa13.05□□□□□ -0.32
CLIP1-213ENST00000540338 GSPT1P15170 499 aaKnown RBP13.05□□□□□ -0.32
CLIP1-213ENST00000540338 DDX54Q8TDD1 881 aaKnown RBP13.05□□□□□ -0.32
CLIP1-213ENST00000540338 CABLES1Q8TDN4 633 aa13.05□□□□□ -0.32
CLIP1-213ENST00000540338 KDRP35968 1356 aa13.05□□□□□ -0.32
CLIP1-213ENST00000540338 DIP2AQ14689 1571 aa13.05□□□□□ -0.32
CLIP1-213ENST00000540338 SLC39A6Q13433 755 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 FMNL2Q96PY5 1086 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 CRB1P82279 1406 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 PNMA6EA0A0J9YXQ4 647 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 HIP1O00291 1037 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 USP26Q9BXU7 913 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 CCDC9Q9Y3X0 531 aaKnown RBP13.04□□□□□ -0.32
CLIP1-213ENST00000540338 USP44Q9H0E7 712 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms