RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ARHGAP27Q6ZUM4 889 aa16.22■□□□□ 0.19
CLSTN3-209ENST00000539982 ATG3Q9NT62 314 aa16.22■□□□□ 0.19
CLSTN3-209ENST00000539982 PXDNLA1KZ92 1463 aa16.22■□□□□ 0.19
CLSTN3-209ENST00000539982 CDCA8Q53HL2 280 aa16.21■□□□□ 0.19
CLSTN3-209ENST00000539982 IFNL2Q8IZJ0 200 aa16.21■□□□□ 0.19
CLSTN3-209ENST00000539982 EYA1Q99502 592 aa16.21■□□□□ 0.19
CLSTN3-209ENST00000539982 PPM1GO15355 546 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-209ENST00000539982 PHKG2P15735 406 aa16.2■□□□□ 0.18
CLSTN3-209ENST00000539982 CARD14Q9BXL6 1004 aa16.2■□□□□ 0.18
CLSTN3-209ENST00000539982 RTCBQ9Y3I0 505 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-209ENST00000539982 WASHC2AQ641Q2 1341 aa16.19■□□□□ 0.18
CLSTN3-209ENST00000539982 KIF13BQ9NQT8 1826 aa16.19■□□□□ 0.18
CLSTN3-209ENST00000539982 NMRK2Q9NPI5 230 aa16.19■□□□□ 0.18
CLSTN3-209ENST00000539982 KIF20BQ96Q89 1820 aa16.19■□□□□ 0.18
CLSTN3-209ENST00000539982 DPEP1P16444 411 aa16.18■□□□□ 0.18
CLSTN3-209ENST00000539982 RC3H1Q5TC82 1133 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-209ENST00000539982 FCHSD2O94868 740 aa16.17■□□□□ 0.18
CLSTN3-209ENST00000539982 ADRA2BP18089 450 aa16.17■□□□□ 0.18
CLSTN3-209ENST00000539982 RBM46Q8TBY0 533 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-209ENST00000539982 ARHGEF1Q92888 912 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-209ENST00000539982 CCDC87Q9NVE4 849 aa16.17■□□□□ 0.18
CLSTN3-209ENST00000539982 N4BP2Q86UW6 1770 aaPredicted RBP16.17■□□□□ 0.18
CLSTN3-209ENST00000539982 KIAA1551Q9HCM1 1747 aa16.16■□□□□ 0.18
CLSTN3-209ENST00000539982 GYS1P13807 737 aa16.16■□□□□ 0.18
CLSTN3-209ENST00000539982 C10orf71Q711Q0 1435 aa16.16■□□□□ 0.18
CLSTN3-209ENST00000539982 ERVV-2B6SEH9 535 aa16.15■□□□□ 0.18
CLSTN3-209ENST00000539982 KCNA3P22001 575 aa16.15■□□□□ 0.18
CLSTN3-209ENST00000539982 RFC4P35249 363 aa16.15■□□□□ 0.18
CLSTN3-209ENST00000539982 C16orf71Q8IYS4 520 aaPredicted RBP16.15■□□□□ 0.18
CLSTN3-209ENST00000539982 SLC4A9Q96Q91 983 aa16.15■□□□□ 0.18
CLSTN3-209ENST00000539982 RBM42Q9BTD8 480 aaKnown RBP16.15■□□□□ 0.18
CLSTN3-209ENST00000539982 PARP3Q9Y6F1 533 aa16.15■□□□□ 0.18
CLSTN3-209ENST00000539982 RPS6KA4O75676 772 aa16.14■□□□□ 0.17
CLSTN3-209ENST00000539982 C9orf131Q5VYM1 1079 aa16.14■□□□□ 0.17
CLSTN3-209ENST00000539982 POLKQ9UBT6 870 aa16.14■□□□□ 0.17
CLSTN3-209ENST00000539982 KDRP35968 1356 aa16.13■□□□□ 0.17
CLSTN3-209ENST00000539982 FSTL1Q12841 308 aa16.13■□□□□ 0.17
CLSTN3-209ENST00000539982 KLRG1Q96E93 195 aa16.13■□□□□ 0.17
CLSTN3-209ENST00000539982 PIM2Q9P1W9 311 aa16.13■□□□□ 0.17
CLSTN3-209ENST00000539982 CNTNAP4Q9C0A0 1308 aa16.13■□□□□ 0.17
CLSTN3-209ENST00000539982 JMYQ8N9B5 988 aa16.12■□□□□ 0.17
CLSTN3-209ENST00000539982 DCAF5Q96JK2 942 aa16.12■□□□□ 0.17
CLSTN3-209ENST00000539982 PLEKHG2Q9H7P9 1386 aa16.12■□□□□ 0.17
CLSTN3-209ENST00000539982 ZNF831Q5JPB2 1677 aa16.11■□□□□ 0.17
CLSTN3-209ENST00000539982 C4AP0C0L4 1744 aa16.11■□□□□ 0.17
CLSTN3-209ENST00000539982 ANKRD26Q9UPS8 1709 aa16.11■□□□□ 0.17
CLSTN3-209ENST00000539982 HSP90AB1P08238 724 aaKnown RBP16.11■□□□□ 0.17
CLSTN3-209ENST00000539982 KDM2BQ8NHM5 1336 aa16.11■□□□□ 0.17
CLSTN3-209ENST00000539982 HTRA3P83110 453 aa16.1■□□□□ 0.17
CLSTN3-209ENST00000539982 EIF4A2Q14240 407 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-209ENST00000539982 DALRD3Q5D0E6 543 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-209ENST00000539982 WDR90Q96KV7 1748 aa16.1■□□□□ 0.17
CLSTN3-209ENST00000539982 BRCA1P38398 1863 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-209ENST00000539982 COL13A1Q5TAT6 717 aaPredicted RBP16.09■□□□□ 0.17
CLSTN3-209ENST00000539982 RRAGCQ9HB90 399 aa16.09■□□□□ 0.17
CLSTN3-209ENST00000539982 ARFGEF1Q9Y6D6 1849 aa16.08■□□□□ 0.17
CLSTN3-209ENST00000539982 CABP4P57796 275 aa16.08■□□□□ 0.16
CLSTN3-209ENST00000539982 PLEKHO1Q53GL0 409 aaPredicted RBP16.08■□□□□ 0.16
CLSTN3-209ENST00000539982 RNF181Q9P0P0 153 aa16.08■□□□□ 0.16
CLSTN3-209ENST00000539982 COL5A3P25940 1745 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-209ENST00000539982 KCPQ6ZWJ8 1503 aa16.06■□□□□ 0.16
CLSTN3-209ENST00000539982 FKBP8Q14318 412 aa16.06■□□□□ 0.16
CLSTN3-209ENST00000539982 AMOTQ4VCS5 1084 aa16.06■□□□□ 0.16
CLSTN3-209ENST00000539982 MYH14Q7Z406 1995 aaKnown RBP16.06■□□□□ 0.16
CLSTN3-209ENST00000539982 USP42Q9H9J4 1324 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-209ENST00000539982 PTCD1O75127 700 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-209ENST00000539982 TNNT2P45379 298 aaPredicted RBP16.05■□□□□ 0.16
CLSTN3-209ENST00000539982 CRKLP46109 303 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-209ENST00000539982 DDR1Q08345 913 aa16.05■□□□□ 0.16
CLSTN3-209ENST00000539982 ZNF530Q6P9A1 599 aaPredicted RBP16.05■□□□□ 0.16
CLSTN3-209ENST00000539982 SRP68Q9UHB9 627 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-209ENST00000539982 TM4SF1P30408 202 aa16.04■□□□□ 0.16
CLSTN3-209ENST00000539982 CHRNA5P30532 468 aa16.04■□□□□ 0.16
CLSTN3-209ENST00000539982 MTHFSP49914 203 aa16.04■□□□□ 0.16
CLSTN3-209ENST00000539982 SMC1BQ8NDV3 1235 aa16.04■□□□□ 0.16
CLSTN3-209ENST00000539982 KDM6AO15550 1401 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-209ENST00000539982 NFATC2IPQ8NCF5 419 aa16.03■□□□□ 0.16
CLSTN3-209ENST00000539982 POLRMTO00411 1230 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-209ENST00000539982 TNS4Q8IZW8 715 aa16.02■□□□□ 0.16
CLSTN3-209ENST00000539982 CAPN15O75808 1086 aa16.01■□□□□ 0.15
CLSTN3-209ENST00000539982 C1orf141Q5JVX7 400 aa16.01■□□□□ 0.15
CLSTN3-209ENST00000539982 INTS5Q6P9B9 1019 aaKnown RBP16.01■□□□□ 0.15
CLSTN3-209ENST00000539982 SBF1O95248 1867 aa16.01■□□□□ 0.15
CLSTN3-209ENST00000539982 ZC3H4Q9UPT8 1303 aaKnown RBP16■□□□□ 0.15
CLSTN3-209ENST00000539982 ZPR1O75312 459 aa16■□□□□ 0.15
CLSTN3-209ENST00000539982 TNRC6CQ9HCJ0 1690 aaKnown RBP15.99■□□□□ 0.15
CLSTN3-209ENST00000539982 VEGFAP15692 232 aaPredicted RBP15.99■□□□□ 0.15
CLSTN3-209ENST00000539982 PRELPP51888 382 aa15.99■□□□□ 0.15
CLSTN3-209ENST00000539982 USPL1Q5W0Q7 1092 aa15.99■□□□□ 0.15
CLSTN3-209ENST00000539982 PCNTO95613 3336 aa15.98■□□□□ 0.15
CLSTN3-209ENST00000539982 GLTPD2A6NH11 291 aa15.98■□□□□ 0.15
CLSTN3-209ENST00000539982 LMNB1P20700 586 aa15.98■□□□□ 0.15
CLSTN3-209ENST00000539982 RASSF7Q02833 373 aa15.97■□□□□ 0.15
CLSTN3-209ENST00000539982 AEBP1Q8IUX7 1158 aa15.97■□□□□ 0.15
CLSTN3-209ENST00000539982 DNAJC10Q8IXB1 793 aa15.96■□□□□ 0.15
CLSTN3-209ENST00000539982 TJP1Q07157 1748 aa15.95■□□□□ 0.14
CLSTN3-209ENST00000539982 NFIXQ14938 502 aa15.95■□□□□ 0.14
CLSTN3-209ENST00000539982 SULT6B1Q6IMI4 303 aa15.95■□□□□ 0.14
CLSTN3-209ENST00000539982 TTLL6Q8N841 843 aa15.95■□□□□ 0.14
CLSTN3-209ENST00000539982 POLR3GLQ9BT43 218 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms