RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GNPATO15228 680 aa18.71■□□□□ 0.59
SS18-204ENST00000539244 ERVV-2B6SEH9 535 aa18.7■□□□□ 0.58
SS18-204ENST00000539244 KIF13BQ9NQT8 1826 aa18.7■□□□□ 0.58
SS18-204ENST00000539244 TNNT2P45379 298 aaPredicted RBP18.69■□□□□ 0.58
SS18-204ENST00000539244 COL5A3P25940 1745 aaPredicted RBP18.69■□□□□ 0.58
SS18-204ENST00000539244 CICQ96RK0 1608 aaPredicted RBP18.68■□□□□ 0.58
SS18-204ENST00000539244 HSP90AB1P08238 724 aaKnown RBP18.68■□□□□ 0.58
SS18-204ENST00000539244 DCAF5Q96JK2 942 aa18.68■□□□□ 0.58
SS18-204ENST00000539244 SLC4A9Q96Q91 983 aa18.68■□□□□ 0.58
SS18-204ENST00000539244 CEP350Q5VT06 3117 aa18.67■□□□□ 0.58
SS18-204ENST00000539244 EIF4G2P78344 907 aaKnown RBP eCLIP18.67■□□□□ 0.58
SS18-204ENST00000539244 RC3H1Q5TC82 1133 aaKnown RBP18.67■□□□□ 0.58
SS18-204ENST00000539244 POLR3GLQ9BT43 218 aa18.67■□□□□ 0.58
SS18-204ENST00000539244 KDM6AO15550 1401 aaPredicted RBP18.66■□□□□ 0.58
SS18-204ENST00000539244 KIAA1551Q9HCM1 1747 aa18.66■□□□□ 0.58
SS18-204ENST00000539244 AMOTQ4VCS5 1084 aa18.66■□□□□ 0.58
SS18-204ENST00000539244 PLEKHO1Q53GL0 409 aaPredicted RBP18.66■□□□□ 0.58
SS18-204ENST00000539244 PANK3Q9H999 370 aa18.66■□□□□ 0.58
SS18-204ENST00000539244 GPBP1L1Q9HC44 474 aaPredicted RBP18.66■□□□□ 0.58
SS18-204ENST00000539244 RTCBQ9Y3I0 505 aaKnown RBP18.66■□□□□ 0.58
SS18-204ENST00000539244 MMP10P09238 476 aa18.65■□□□□ 0.58
SS18-204ENST00000539244 ADRA2BP18089 450 aa18.65■□□□□ 0.58
SS18-204ENST00000539244 CNTNAP4Q9C0A0 1308 aa18.65■□□□□ 0.58
SS18-204ENST00000539244 PXDNLA1KZ92 1463 aa18.65■□□□□ 0.58
SS18-204ENST00000539244 HSPA5P11021 654 aaKnown RBP18.64■□□□□ 0.57
SS18-204ENST00000539244 TRAPPC3LQ5T215 181 aa18.64■□□□□ 0.57
SS18-204ENST00000539244 NLGN1Q8N2Q7 840 aa18.64■□□□□ 0.57
SS18-204ENST00000539244 MYH14Q7Z406 1995 aaKnown RBP18.63■□□□□ 0.57
SS18-204ENST00000539244 C10orf71Q711Q0 1435 aa18.63■□□□□ 0.57
SS18-204ENST00000539244 RPS6KA4O75676 772 aa18.62■□□□□ 0.57
SS18-204ENST00000539244 TGFB2P61812 414 aa18.62■□□□□ 0.57
SS18-204ENST00000539244 ZNF530Q6P9A1 599 aaPredicted RBP18.62■□□□□ 0.57
SS18-204ENST00000539244 RBM42Q9BTD8 480 aaKnown RBP18.62■□□□□ 0.57
SS18-204ENST00000539244 C4AP0C0L4 1744 aa18.61■□□□□ 0.57
SS18-204ENST00000539244 ARHGEF1Q92888 912 aaKnown RBP18.61■□□□□ 0.57
SS18-204ENST00000539244 PCGF6Q9BYE7 350 aa18.61■□□□□ 0.57
SS18-204ENST00000539244 WWC3Q9ULE0 1092 aa18.61■□□□□ 0.57
SS18-204ENST00000539244 N4BP2Q86UW6 1770 aaPredicted RBP18.6■□□□□ 0.57
SS18-204ENST00000539244 GYS1P13807 737 aa18.6■□□□□ 0.57
SS18-204ENST00000539244 CABP4P57796 275 aa18.6■□□□□ 0.57
SS18-204ENST00000539244 AEBP1Q8IUX7 1158 aa18.6■□□□□ 0.57
SS18-204ENST00000539244 BRCA1P38398 1863 aaKnown RBP18.59■□□□□ 0.57
SS18-204ENST00000539244 MTHFSP49914 203 aa18.59■□□□□ 0.57
SS18-204ENST00000539244 MORC1Q86VD1 984 aa18.59■□□□□ 0.57
SS18-204ENST00000539244 RFC4P35249 363 aa18.58■□□□□ 0.56
SS18-204ENST00000539244 C1orf141Q5JVX7 400 aa18.58■□□□□ 0.56
SS18-204ENST00000539244 SCN11AQ9UI33 1791 aa18.58■□□□□ 0.56
SS18-204ENST00000539244 ZNF526Q8TF50 670 aaPredicted RBP18.57■□□□□ 0.56
SS18-204ENST00000539244 CCDC87Q9NVE4 849 aa18.57■□□□□ 0.56
SS18-204ENST00000539244 KIF3CO14782 793 aa18.56■□□□□ 0.56
SS18-204ENST00000539244 HSPA6P17066 643 aa18.56■□□□□ 0.56
SS18-204ENST00000539244 IL13P35225 146 aa18.56■□□□□ 0.56
SS18-204ENST00000539244 SULT6B1Q6IMI4 303 aa18.56■□□□□ 0.56
SS18-204ENST00000539244 NFATC2IPQ8NCF5 419 aa18.56■□□□□ 0.56
SS18-204ENST00000539244 TJP1Q07157 1748 aa18.56■□□□□ 0.56
SS18-204ENST00000539244 A0A0G2JLW4 131 aa18.55■□□□□ 0.56
SS18-204ENST00000539244 KNSTRNQ9Y448 316 aa18.55■□□□□ 0.56
SS18-204ENST00000539244 PTCD1O75127 700 aaKnown RBP18.54■□□□□ 0.56
SS18-204ENST00000539244 CRKLP46109 303 aaKnown RBP18.54■□□□□ 0.56
SS18-204ENST00000539244 BCS1LQ9Y276 419 aa18.54■□□□□ 0.56
SS18-204ENST00000539244 PARP3Q9Y6F1 533 aa18.54■□□□□ 0.56
SS18-204ENST00000539244 ADAMTS7Q9UKP4 1686 aa18.54■□□□□ 0.56
SS18-204ENST00000539244 ARFGEF1Q9Y6D6 1849 aa18.53■□□□□ 0.56
SS18-204ENST00000539244 USP42Q9H9J4 1324 aaKnown RBP18.53■□□□□ 0.56
SS18-204ENST00000539244 DPEP1P16444 411 aa18.53■□□□□ 0.56
SS18-204ENST00000539244 AMER1Q5JTC6 1135 aaPredicted RBP18.53■□□□□ 0.56
SS18-204ENST00000539244 KCNA3P22001 575 aa18.52■□□□□ 0.56
SS18-204ENST00000539244 AKAP4Q5JQC9 854 aa18.52■□□□□ 0.56
SS18-204ENST00000539244 MRC1P22897 1456 aa18.52■□□□□ 0.55
SS18-204ENST00000539244 INTS5Q6P9B9 1019 aaKnown RBP18.5■□□□□ 0.55
SS18-204ENST00000539244 SLC52A2Q9HAB3 445 aa18.5■□□□□ 0.55
SS18-204ENST00000539244 FCHSD2O94868 740 aa18.49■□□□□ 0.55
SS18-204ENST00000539244 DDR1Q08345 913 aa18.49■□□□□ 0.55
SS18-204ENST00000539244 FKBP8Q14318 412 aa18.49■□□□□ 0.55
SS18-204ENST00000539244 ARHGAP27Q6ZUM4 889 aa18.49■□□□□ 0.55
SS18-204ENST00000539244 SRP68Q9UHB9 627 aaKnown RBP18.49■□□□□ 0.55
SS18-204ENST00000539244 VIRMAQ69YN4 1812 aaKnown RBP18.49■□□□□ 0.55
SS18-204ENST00000539244 TOMM70O94826 608 aa18.47■□□□□ 0.55
SS18-204ENST00000539244 PIM2Q9P1W9 311 aa18.47■□□□□ 0.55
SS18-204ENST00000539244 KCPQ6ZWJ8 1503 aa18.46■□□□□ 0.55
SS18-204ENST00000539244 RNMTO43148 476 aaKnown RBP18.46■□□□□ 0.55
SS18-204ENST00000539244 TM4SF1P30408 202 aa18.46■□□□□ 0.55
SS18-204ENST00000539244 IFFO2Q5TF58 517 aa18.46■□□□□ 0.55
SS18-204ENST00000539244 DNAJC10Q8IXB1 793 aa18.46■□□□□ 0.55
SS18-204ENST00000539244 LGR6Q9HBX8 967 aa18.46■□□□□ 0.55
SS18-204ENST00000539244 SOS1Q07889 1333 aaPredicted RBP18.46■□□□□ 0.55
SS18-204ENST00000539244 KIF7Q2M1P5 1343 aa18.46■□□□□ 0.55
SS18-204ENST00000539244 POLRMTO00411 1230 aaKnown RBP18.45■□□□□ 0.54
SS18-204ENST00000539244 PER1O15534 1290 aaPredicted RBP18.44■□□□□ 0.54
SS18-204ENST00000539244 CYP19A1P11511 503 aaPredicted RBP18.44■□□□□ 0.54
SS18-204ENST00000539244 DALRD3Q5D0E6 543 aaKnown RBP18.44■□□□□ 0.54
SS18-204ENST00000539244 CCER1Q8TC90 406 aaPredicted RBP18.44■□□□□ 0.54
SS18-204ENST00000539244 NRXN2Q9P2S2 1712 aa18.43■□□□□ 0.54
SS18-204ENST00000539244 ZPR1O75312 459 aa18.43■□□□□ 0.54
SS18-204ENST00000539244 C9orf131Q5VYM1 1079 aa18.43■□□□□ 0.54
SS18-204ENST00000539244 VSIG10Q8N0Z9 540 aa18.43■□□□□ 0.54
SS18-204ENST00000539244 UBR2Q8IWV8 1755 aa18.42■□□□□ 0.54
SS18-204ENST00000539244 HMOX1P09601 288 aa18.42■□□□□ 0.54
SS18-204ENST00000539244 APLP1P51693 650 aa18.42■□□□□ 0.54
SS18-204ENST00000539244 SLC39A6Q13433 755 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 404.5 ms