RNA–Protein interactions for RNA: ENST00000538725.1

MSRB3-208, Transcript of methionine sulfoxide reductase B3, humanhuman

TSL 4

Gene MSRB3, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSRB3-208ENST00000538725 LINC00116Q8NCU8 138 aa27.53■■■□□ 2
MSRB3-208ENST00000538725 KDRP35968 1356 aa27.51■■□□□ 1.99
MSRB3-208ENST00000538725 ITPK1Q13572 414 aa27.51■■□□□ 1.99
MSRB3-208ENST00000538725 C1orf141Q5JVX7 400 aa27.51■■□□□ 1.99
MSRB3-208ENST00000538725 CC2D1BQ5T0F9 858 aaKnown RBP27.51■■□□□ 1.99
MSRB3-208ENST00000538725 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.5■■□□□ 1.99
MSRB3-208ENST00000538725 CABP4P57796 275 aa27.5■■□□□ 1.99
MSRB3-208ENST00000538725 GPR162Q16538 588 aa27.5■■□□□ 1.99
MSRB3-208ENST00000538725 AMIGO3Q86WK7 504 aa27.5■■□□□ 1.99
MSRB3-208ENST00000538725 UBR3Q6ZT12 1888 aa27.49■■□□□ 1.99
MSRB3-208ENST00000538725 PHF14O94880 888 aa27.49■■□□□ 1.99
MSRB3-208ENST00000538725 SSFA2P28290 1259 aa27.49■■□□□ 1.99
MSRB3-208ENST00000538725 SMIM5Q71RC9 77 aa27.48■■□□□ 1.99
MSRB3-208ENST00000538725 NLGN2Q8NFZ4 835 aa27.47■■□□□ 1.99
MSRB3-208ENST00000538725 KDM6AO15550 1401 aaPredicted RBP27.47■■□□□ 1.99
MSRB3-208ENST00000538725 RBM42Q9BTD8 480 aaKnown RBP27.46■■□□□ 1.99
MSRB3-208ENST00000538725 GNPATO15228 680 aa27.45■■□□□ 1.98
MSRB3-208ENST00000538725 CHD4Q14839 1912 aa27.44■■□□□ 1.98
MSRB3-208ENST00000538725 NFATC2IPQ8NCF5 419 aa27.44■■□□□ 1.98
MSRB3-208ENST00000538725 SLC4A9Q96Q91 983 aa27.44■■□□□ 1.98
MSRB3-208ENST00000538725 NPC1L1Q9UHC9 1359 aa27.44■■□□□ 1.98
MSRB3-208ENST00000538725 GOLGB1Q14789 3259 aaKnown RBP27.43■■□□□ 1.98
MSRB3-208ENST00000538725 DIAPH1O60610 1272 aaKnown RBP27.43■■□□□ 1.98
MSRB3-208ENST00000538725 AKAP4Q5JQC9 854 aa27.42■■□□□ 1.98
MSRB3-208ENST00000538725 PELP1Q8IZL8 1130 aaKnown RBP27.42■■□□□ 1.98
MSRB3-208ENST00000538725 CD2APQ9Y5K6 639 aa27.42■■□□□ 1.98
MSRB3-208ENST00000538725 ZNF831Q5JPB2 1677 aa27.42■■□□□ 1.98
MSRB3-208ENST00000538725 HMOX1P09601 288 aa27.41■■□□□ 1.98
MSRB3-208ENST00000538725 RC3H1Q5TC82 1133 aaKnown RBP27.41■■□□□ 1.98
MSRB3-208ENST00000538725 CNGB1Q14028 1251 aaPredicted RBP27.4■■□□□ 1.98
MSRB3-208ENST00000538725 RTCBQ9Y3I0 505 aaKnown RBP27.39■■□□□ 1.98
MSRB3-208ENST00000538725 TRAPPC3LQ5T215 181 aa27.38■■□□□ 1.97
MSRB3-208ENST00000538725 PTCD1O75127 700 aaKnown RBP27.37■■□□□ 1.97
MSRB3-208ENST00000538725 SCN11AQ9UI33 1791 aa27.37■■□□□ 1.97
MSRB3-208ENST00000538725 ZNF784Q8NCA9 323 aaPredicted RBP27.36■■□□□ 1.97
MSRB3-208ENST00000538725 LGR6Q9HBX8 967 aa27.36■■□□□ 1.97
MSRB3-208ENST00000538725 CNTNAP4Q9C0A0 1308 aa27.35■■□□□ 1.97
MSRB3-208ENST00000538725 GRIN3BO60391 1043 aa27.34■■□□□ 1.97
MSRB3-208ENST00000538725 RPS6KA4O75676 772 aa27.34■■□□□ 1.97
MSRB3-208ENST00000538725 YBX3P16989 372 aaKnown RBP eCLIP27.33■■□□□ 1.97
MSRB3-208ENST00000538725 MTHFSDQ2M296 383 aaKnown RBP27.33■■□□□ 1.97
MSRB3-208ENST00000538725 ARHGEF1Q92888 912 aaKnown RBP27.33■■□□□ 1.97
MSRB3-208ENST00000538725 SLC52A2Q9HAB3 445 aa27.33■■□□□ 1.97
MSRB3-208ENST00000538725 COL5A3P25940 1745 aaPredicted RBP27.33■■□□□ 1.96
MSRB3-208ENST00000538725 RNMTO43148 476 aaKnown RBP27.32■■□□□ 1.96
MSRB3-208ENST00000538725 NLGN1Q8N2Q7 840 aa27.31■■□□□ 1.96
MSRB3-208ENST00000538725 U2SURPO15042 1029 aaKnown RBP27.3■■□□□ 1.96
MSRB3-208ENST00000538725 RFC4P35249 363 aa27.3■■□□□ 1.96
MSRB3-208ENST00000538725 MYH14Q7Z406 1995 aaKnown RBP27.29■■□□□ 1.96
MSRB3-208ENST00000538725 COL3A1P02461 1466 aaPredicted RBP27.28■■□□□ 1.96
MSRB3-208ENST00000538725 MMP10P09238 476 aa27.28■■□□□ 1.96
MSRB3-208ENST00000538725 CRKLP46109 303 aaKnown RBP27.28■■□□□ 1.96
MSRB3-208ENST00000538725 VIRMAQ69YN4 1812 aaKnown RBP27.26■■□□□ 1.95
MSRB3-208ENST00000538725 GYS1P13807 737 aa27.25■■□□□ 1.95
MSRB3-208ENST00000538725 SLC39A6Q13433 755 aa27.24■■□□□ 1.95
MSRB3-208ENST00000538725 CFAP53Q96M91 514 aa27.24■■□□□ 1.95
MSRB3-208ENST00000538725 MRC1P22897 1456 aa27.23■■□□□ 1.95
MSRB3-208ENST00000538725 TJP1Q07157 1748 aa27.22■■□□□ 1.95
MSRB3-208ENST00000538725 ADAMTS7Q9UKP4 1686 aa27.22■■□□□ 1.95
MSRB3-208ENST00000538725 INTS5Q6P9B9 1019 aaKnown RBP27.22■■□□□ 1.95
MSRB3-208ENST00000538725 PPP4R3CPQ6ZMV5 832 aa27.22■■□□□ 1.95
MSRB3-208ENST00000538725 CICQ96RK0 1608 aaPredicted RBP27.22■■□□□ 1.95
MSRB3-208ENST00000538725 DNAJC10Q8IXB1 793 aa27.21■■□□□ 1.95
MSRB3-208ENST00000538725 GAS2L2Q8NHY3 880 aa27.21■■□□□ 1.95
MSRB3-208ENST00000538725 GNAT3A8MTJ3 354 aa27.2■■□□□ 1.94
MSRB3-208ENST00000538725 CCDC87Q9NVE4 849 aa27.19■■□□□ 1.94
MSRB3-208ENST00000538725 NUDCQ9Y266 331 aa27.19■■□□□ 1.94
MSRB3-208ENST00000538725 PARP3Q9Y6F1 533 aa27.19■■□□□ 1.94
MSRB3-208ENST00000538725 CYP19A1P11511 503 aaPredicted RBP27.18■■□□□ 1.94
MSRB3-208ENST00000538725 PPP2R1AP30153 589 aa27.18■■□□□ 1.94
MSRB3-208ENST00000538725 TGFB2P61812 414 aa27.18■■□□□ 1.94
MSRB3-208ENST00000538725 VSIG10Q8N0Z9 540 aa27.18■■□□□ 1.94
MSRB3-208ENST00000538725 IL17REQ8NFR9 667 aa27.18■■□□□ 1.94
MSRB3-208ENST00000538725 C4AP0C0L4 1744 aa27.18■■□□□ 1.94
MSRB3-208ENST00000538725 SRP68Q9UHB9 627 aaKnown RBP27.17■■□□□ 1.94
MSRB3-208ENST00000538725 KIF13BQ9NQT8 1826 aa27.16■■□□□ 1.94
MSRB3-208ENST00000538725 USP42Q9H9J4 1324 aaKnown RBP27.16■■□□□ 1.94
MSRB3-208ENST00000538725 TEFQ10587 303 aa27.15■■□□□ 1.94
MSRB3-208ENST00000538725 WWC3Q9ULE0 1092 aa27.15■■□□□ 1.94
MSRB3-208ENST00000538725 KCPQ6ZWJ8 1503 aa27.15■■□□□ 1.94
MSRB3-208ENST00000538725 PRKAR2BP31323 418 aa27.14■■□□□ 1.94
MSRB3-208ENST00000538725 FKBP8Q14318 412 aa27.14■■□□□ 1.94
MSRB3-208ENST00000538725 TTC5Q8N0Z6 440 aa27.14■■□□□ 1.94
MSRB3-208ENST00000538725 PHACTR3Q96KR7 559 aa27.14■■□□□ 1.94
MSRB3-208ENST00000538725 RSPH6AQ9H0K4 717 aa27.14■■□□□ 1.94
MSRB3-208ENST00000538725 SOS1Q07889 1333 aaPredicted RBP27.13■■□□□ 1.93
MSRB3-208ENST00000538725 ZPR1O75312 459 aa27.12■■□□□ 1.93
MSRB3-208ENST00000538725 C10orf71Q711Q0 1435 aa27.11■■□□□ 1.93
MSRB3-208ENST00000538725 A0A0G2JLW4 131 aa27.11■■□□□ 1.93
MSRB3-208ENST00000538725 U2AF1L5P0DN76 240 aaPredicted RBP27.11■■□□□ 1.93
MSRB3-208ENST00000538725 U2AF1Q01081 240 aaKnown RBP eCLIP27.11■■□□□ 1.93
MSRB3-208ENST00000538725 FCHSD2O94868 740 aa27.1■■□□□ 1.93
MSRB3-208ENST00000538725 ZNF790Q6PG37 636 aa27.1■■□□□ 1.93
MSRB3-208ENST00000538725 PXDNLA1KZ92 1463 aa27.1■■□□□ 1.93
MSRB3-208ENST00000538725 UBR2Q8IWV8 1755 aa27.09■■□□□ 1.93
MSRB3-208ENST00000538725 STARD3NLO95772 234 aa27.09■■□□□ 1.93
MSRB3-208ENST00000538725 TM4SF1P30408 202 aa27.09■■□□□ 1.93
MSRB3-208ENST00000538725 USPL1Q5W0Q7 1092 aa27.09■■□□□ 1.93
MSRB3-208ENST00000538725 ZBTB1Q9Y2K1 713 aa27.09■■□□□ 1.93
MSRB3-208ENST00000538725 N4BP2Q86UW6 1770 aaPredicted RBP27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms