RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ABCC4O15439 1325 aa13.6□□□□□ -0.23
CLIP1-210ENST00000538120 MSH6P52701 1360 aa13.59□□□□□ -0.23
CLIP1-210ENST00000538120 HDAC1Q13547 482 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-210ENST00000538120 FAM161AQ3B820 660 aa13.59□□□□□ -0.23
CLIP1-210ENST00000538120 NBPF6Q5VWK0 638 aa13.59□□□□□ -0.23
CLIP1-210ENST00000538120 RTF1Q92541 710 aaKnown RBP13.59□□□□□ -0.23
CLIP1-210ENST00000538120 NBPF4Q96M43 638 aa13.59□□□□□ -0.23
CLIP1-210ENST00000538120 PDZRN3Q9UPQ7 1066 aa13.59□□□□□ -0.23
CLIP1-210ENST00000538120 MST1RQ04912 1400 aa13.59□□□□□ -0.23
CLIP1-210ENST00000538120 USP19O94966 1318 aa13.59□□□□□ -0.23
CLIP1-210ENST00000538120 ARHGEF25Q86VW2 580 aa13.59□□□□□ -0.23
CLIP1-210ENST00000538120 PHRF1Q9P1Y6 1649 aaKnown RBP13.59□□□□□ -0.23
CLIP1-210ENST00000538120 ZBTB7BO15156 539 aaPredicted RBP13.58□□□□□ -0.23
CLIP1-210ENST00000538120 PKNOX2Q96KN3 472 aa13.58□□□□□ -0.23
CLIP1-210ENST00000538120 BRPF3Q9ULD4 1205 aa13.58□□□□□ -0.24
CLIP1-210ENST00000538120 NCOA3Q9Y6Q9 1424 aa13.58□□□□□ -0.24
CLIP1-210ENST00000538120 KIF1AQ12756 1690 aa13.58□□□□□ -0.24
CLIP1-210ENST00000538120 GNAT3A8MTJ3 354 aa13.57□□□□□ -0.24
CLIP1-210ENST00000538120 IL17REQ8NFR9 667 aa13.57□□□□□ -0.24
CLIP1-210ENST00000538120 LRRC37A3O60309 1634 aa13.57□□□□□ -0.24
CLIP1-210ENST00000538120 ZBTB7CA1YPR0 619 aa13.56□□□□□ -0.24
CLIP1-210ENST00000538120 API5Q9BZZ5 524 aaKnown RBP13.56□□□□□ -0.24
CLIP1-210ENST00000538120 TSPYL4Q9UJ04 414 aa13.56□□□□□ -0.24
CLIP1-210ENST00000538120 MAP3K5Q99683 1374 aa13.56□□□□□ -0.24
CLIP1-210ENST00000538120 DCCP43146 1447 aa13.56□□□□□ -0.24
CLIP1-210ENST00000538120 ATF3P18847 181 aa13.56□□□□□ -0.24
CLIP1-210ENST00000538120 GSE1Q14687 1217 aa13.56□□□□□ -0.24
CLIP1-210ENST00000538120 RGS12O14924 1447 aa13.56□□□□□ -0.24
CLIP1-210ENST00000538120 KDM4FA0A1W2PPD8 638 aa13.55□□□□□ -0.24
CLIP1-210ENST00000538120 LMOD2Q6P5Q4 547 aa13.55□□□□□ -0.24
CLIP1-210ENST00000538120 LRRC59Q96AG4 307 aaKnown RBP13.55□□□□□ -0.24
CLIP1-210ENST00000538120 SMC5Q8IY18 1101 aa13.55□□□□□ -0.24
CLIP1-210ENST00000538120 DDX17Q92841 729 aaKnown RBP13.55□□□□□ -0.24
CLIP1-210ENST00000538120 NCAPD2Q15021 1401 aa13.54□□□□□ -0.24
CLIP1-210ENST00000538120 AXIN2Q9Y2T1 843 aa13.54□□□□□ -0.24
CLIP1-210ENST00000538120 ALS2Q96Q42 1657 aa13.53□□□□□ -0.24
CLIP1-210ENST00000538120 MED1Q15648 1581 aaPredicted RBP13.53□□□□□ -0.24
CLIP1-210ENST00000538120 INTS3Q68E01 1043 aaKnown RBP13.52□□□□□ -0.24
CLIP1-210ENST00000538120 RGPD2P0DJD1 1756 aa13.52□□□□□ -0.24
CLIP1-210ENST00000538120 LMTK3Q96Q04 1460 aa13.52□□□□□ -0.25
CLIP1-210ENST00000538120 CEMIPQ8WUJ3 1361 aa13.52□□□□□ -0.25
CLIP1-210ENST00000538120 FRAT2O75474 233 aaPredicted RBP13.52□□□□□ -0.25
CLIP1-210ENST00000538120 ANKRD24Q8TF21 1146 aa13.52□□□□□ -0.25
CLIP1-210ENST00000538120 C1orf115Q9H7X2 142 aa13.52□□□□□ -0.25
CLIP1-210ENST00000538120 TAF7Q15545 349 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-210ENST00000538120 CADPS2Q86UW7 1296 aa13.51□□□□□ -0.25
CLIP1-210ENST00000538120 SIRT2Q8IXJ6 389 aa13.51□□□□□ -0.25
CLIP1-210ENST00000538120 BABAM1Q9NWV8 329 aa13.51□□□□□ -0.25
CLIP1-210ENST00000538120 G2E3Q7L622 706 aa13.51□□□□□ -0.25
CLIP1-210ENST00000538120 CHMP4BQ9H444 224 aaKnown RBP13.51□□□□□ -0.25
CLIP1-210ENST00000538120 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-210ENST00000538120 PTPRCP08575 1304 aa13.5□□□□□ -0.25
CLIP1-210ENST00000538120 DHX37Q8IY37 1157 aaKnown RBP13.5□□□□□ -0.25
CLIP1-210ENST00000538120 LGR6Q9HBX8 967 aa13.5□□□□□ -0.25
CLIP1-210ENST00000538120 ZC3H6P61129 1189 aaKnown RBP13.49□□□□□ -0.25
CLIP1-210ENST00000538120 CAMTA1Q9Y6Y1 1673 aa13.49□□□□□ -0.25
CLIP1-210ENST00000538120 STRCQ7RTU9 1775 aa13.49□□□□□ -0.25
CLIP1-210ENST00000538120 NUCB1Q02818 461 aa13.49□□□□□ -0.25
CLIP1-210ENST00000538120 CIZ1Q9ULV3 898 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-210ENST00000538120 XIRP1Q702N8 1843 aaKnown RBP13.48□□□□□ -0.25
CLIP1-210ENST00000538120 SEC24BO95487 1268 aa13.48□□□□□ -0.25
CLIP1-210ENST00000538120 FAM212AQ96EL1 285 aa13.48□□□□□ -0.25
CLIP1-210ENST00000538120 PXDNQ92626 1479 aa13.48□□□□□ -0.25
CLIP1-210ENST00000538120 PLEKHO1Q53GL0 409 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-210ENST00000538120 AKAP4Q5JQC9 854 aa13.48□□□□□ -0.25
CLIP1-210ENST00000538120 NPHP3Q7Z494 1330 aa13.47□□□□□ -0.25
CLIP1-210ENST00000538120 POTEHQ6S545 545 aa13.47□□□□□ -0.25
CLIP1-210ENST00000538120 IGSF3O75054 1194 aa13.47□□□□□ -0.25
CLIP1-210ENST00000538120 PDE4CQ08493 712 aa13.47□□□□□ -0.25
CLIP1-210ENST00000538120 ZNF530Q6P9A1 599 aaPredicted RBP13.47□□□□□ -0.25
CLIP1-210ENST00000538120 ERBB3P21860 1342 aa13.46□□□□□ -0.25
CLIP1-210ENST00000538120 CDK11BP21127 795 aaKnown RBP13.46□□□□□ -0.25
CLIP1-210ENST00000538120 AMOTQ4VCS5 1084 aa13.46□□□□□ -0.25
CLIP1-210ENST00000538120 TNS3Q68CZ2 1445 aa13.46□□□□□ -0.25
CLIP1-210ENST00000538120 SOS1Q07889 1333 aaPredicted RBP13.46□□□□□ -0.25
CLIP1-210ENST00000538120 SPATA31A3Q5VYP0 1347 aa13.46□□□□□ -0.25
CLIP1-210ENST00000538120 LMO7Q8WWI1 1683 aa13.46□□□□□ -0.26
CLIP1-210ENST00000538120 CABLES1Q8TDN4 633 aa13.46□□□□□ -0.26
CLIP1-210ENST00000538120 TSPYL2Q9H2G4 693 aaPredicted RBP13.46□□□□□ -0.26
CLIP1-210ENST00000538120 DCAF8Q5TAQ9 597 aa13.45□□□□□ -0.26
CLIP1-210ENST00000538120 CCDC30Q5VVM6 783 aa13.45□□□□□ -0.26
CLIP1-210ENST00000538120 BRINP3Q76B58 766 aa13.45□□□□□ -0.26
CLIP1-210ENST00000538120 GCC1Q96CN9 775 aa13.45□□□□□ -0.26
CLIP1-210ENST00000538120 VIRMAQ69YN4 1812 aaKnown RBP13.45□□□□□ -0.26
CLIP1-210ENST00000538120 F6X3S4 739 aa13.45□□□□□ -0.26
CLIP1-210ENST00000538120 MPRIPQ6WCQ1 1025 aa13.45□□□□□ -0.26
CLIP1-210ENST00000538120 CHD1LQ86WJ1 897 aa13.45□□□□□ -0.26
CLIP1-210ENST00000538120 ZNF335Q9H4Z2 1342 aaPredicted RBP13.44□□□□□ -0.26
CLIP1-210ENST00000538120 COL18A1P39060 1754 aa13.44□□□□□ -0.26
CLIP1-210ENST00000538120 RGPD5Q99666 1765 aa13.44□□□□□ -0.26
CLIP1-210ENST00000538120 ATP10DQ9P241 1426 aa13.44□□□□□ -0.26
CLIP1-210ENST00000538120 RNMTO43148 476 aaKnown RBP13.44□□□□□ -0.26
CLIP1-210ENST00000538120 KCNQ3O43525 872 aa13.44□□□□□ -0.26
CLIP1-210ENST00000538120 EIF4A1P60842 406 aaKnown RBP13.44□□□□□ -0.26
CLIP1-210ENST00000538120 NECTIN2Q92692 538 aa13.44□□□□□ -0.26
CLIP1-210ENST00000538120 LNPKQ9C0E8 428 aa13.44□□□□□ -0.26
CLIP1-210ENST00000538120 MEIS3Q99687 375 aa13.44□□□□□ -0.26
CLIP1-210ENST00000538120 STK31Q9BXU1 1019 aa13.44□□□□□ -0.26
CLIP1-210ENST00000538120 FAM208AQ9UK61 1670 aaKnown RBP13.43□□□□□ -0.26
CLIP1-210ENST00000538120 FLIIQ13045 1269 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms