RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 LTN1O94822 1766 aa13.15□□□□□ -0.31
USP28-205ENST00000537706 N4BP2Q86UW6 1770 aaPredicted RBP13.15□□□□□ -0.31
USP28-205ENST00000537706 KIF13BQ9NQT8 1826 aa13.14□□□□□ -0.31
USP28-205ENST00000537706 MEGF6O75095 1541 aa13.14□□□□□ -0.31
USP28-205ENST00000537706 CFAP44Q96MT7 982 aa13.13□□□□□ -0.31
USP28-205ENST00000537706 TAF1LQ8IZX4 1826 aa13.13□□□□□ -0.31
USP28-205ENST00000537706 ADRA2BP18089 450 aa13.13□□□□□ -0.31
USP28-205ENST00000537706 ATP6V1AP38606 617 aa13.13□□□□□ -0.31
USP28-205ENST00000537706 WBP1LQ9NX94 342 aa13.13□□□□□ -0.31
USP28-205ENST00000537706 UBR3Q6ZT12 1888 aa13.12□□□□□ -0.31
USP28-205ENST00000537706 KCNA3P22001 575 aa13.12□□□□□ -0.31
USP28-205ENST00000537706 RFC4P35249 363 aa13.12□□□□□ -0.31
USP28-205ENST00000537706 MAP2K1Q02750 393 aaPredicted RBP13.12□□□□□ -0.31
USP28-205ENST00000537706 KIAA1551Q9HCM1 1747 aa13.12□□□□□ -0.31
USP28-205ENST00000537706 TOGARAM1Q9Y4F4 1720 aa13.12□□□□□ -0.31
USP28-205ENST00000537706 SMG6Q86US8 1419 aaKnown RBP13.11□□□□□ -0.31
USP28-205ENST00000537706 HSPA8P11142 646 aaKnown RBP13.11□□□□□ -0.31
USP28-205ENST00000537706 HOXC9P31274 260 aa13.11□□□□□ -0.31
USP28-205ENST00000537706 VEGFBP49765 207 aa13.11□□□□□ -0.31
USP28-205ENST00000537706 BEGAINQ9BUH8 593 aa13.11□□□□□ -0.31
USP28-205ENST00000537706 ARFGEF1Q9Y6D6 1849 aa13.1□□□□□ -0.31
USP28-205ENST00000537706 RASSF7Q02833 373 aa13.1□□□□□ -0.31
USP28-205ENST00000537706 PIGBQ92521 554 aa13.09□□□□□ -0.31
USP28-205ENST00000537706 CD163L1Q9NR16 1453 aa13.09□□□□□ -0.31
USP28-205ENST00000537706 TMC1Q8TDI8 760 aa13.09□□□□□ -0.31
USP28-205ENST00000537706 TERF2IPQ9NYB0 399 aa13.09□□□□□ -0.31
USP28-205ENST00000537706 TMOD3Q9NYL9 352 aa13.09□□□□□ -0.31
USP28-205ENST00000537706 EDC4Q6P2E9 1401 aaKnown RBP13.09□□□□□ -0.31
USP28-205ENST00000537706 SBNO2Q9Y2G9 1366 aa13.08□□□□□ -0.32
USP28-205ENST00000537706 TMEM88BA6NKF7 163 aa13.08□□□□□ -0.32
USP28-205ENST00000537706 COG3Q96JB2 828 aa13.08□□□□□ -0.32
USP28-205ENST00000537706 C4AP0C0L4 1744 aa13.08□□□□□ -0.32
USP28-205ENST00000537706 GYS1P13807 737 aa13.07□□□□□ -0.32
USP28-205ENST00000537706 ARHGEF1Q92888 912 aaKnown RBP13.07□□□□□ -0.32
USP28-205ENST00000537706 KDM6AO15550 1401 aaPredicted RBP13.07□□□□□ -0.32
USP28-205ENST00000537706 MAP3K19Q56UN5 1328 aa13.07□□□□□ -0.32
USP28-205ENST00000537706 ITPK1Q13572 414 aa13.07□□□□□ -0.32
USP28-205ENST00000537706 NBPF6Q5VWK0 638 aa13.07□□□□□ -0.32
USP28-205ENST00000537706 USHBP1Q8N6Y0 703 aa13.07□□□□□ -0.32
USP28-205ENST00000537706 NBPF4Q96M43 638 aa13.07□□□□□ -0.32
USP28-205ENST00000537706 MON2Q7Z3U7 1717 aa13.07□□□□□ -0.32
USP28-205ENST00000537706 RTL1A6NKG5 1358 aa13.06□□□□□ -0.32
USP28-205ENST00000537706 CHRNA5P30532 468 aa13.05□□□□□ -0.32
USP28-205ENST00000537706 RC3H1Q5TC82 1133 aaKnown RBP13.05□□□□□ -0.32
USP28-205ENST00000537706 DEFB115Q30KQ5 88 aa13.05□□□□□ -0.32
USP28-205ENST00000537706 RAB3GAP2Q9H2M9 1393 aa13.04□□□□□ -0.32
USP28-205ENST00000537706 IQCA1LA6NCM1 817 aa13.04□□□□□ -0.32
USP28-205ENST00000537706 POTECB2RU33 542 aa13.04□□□□□ -0.32
USP28-205ENST00000537706 CYP27B1O15528 508 aa13.04□□□□□ -0.32
USP28-205ENST00000537706 RPS6KA4O75676 772 aa13.04□□□□□ -0.32
USP28-205ENST00000537706 LDHDQ86WU2 507 aa13.04□□□□□ -0.32
USP28-205ENST00000537706 SPG7Q9UQ90 795 aa13.04□□□□□ -0.32
USP28-205ENST00000537706 BRCA1P38398 1863 aaKnown RBP13.04□□□□□ -0.32
USP28-205ENST00000537706 NKX1-1Q15270 411 aaPredicted RBP13.02□□□□□ -0.32
USP28-205ENST00000537706 TTLL6Q8N841 843 aa13.02□□□□□ -0.32
USP28-205ENST00000537706 ASAP1Q9ULH1 1129 aa13.02□□□□□ -0.32
USP28-205ENST00000537706 PASKQ96RG2 1323 aa13.02□□□□□ -0.33
USP28-205ENST00000537706 CNTNAP4Q9C0A0 1308 aa13.02□□□□□ -0.33
USP28-205ENST00000537706 ERFEQ4G0M1 354 aa13.01□□□□□ -0.33
USP28-205ENST00000537706 RBM42Q9BTD8 480 aaKnown RBP13.01□□□□□ -0.33
USP28-205ENST00000537706 WDR33Q9C0J8 1336 aaKnown RBP13.01□□□□□ -0.33
USP28-205ENST00000537706 RASSF10A6NK89 507 aa13.01□□□□□ -0.33
USP28-205ENST00000537706 ECE1P42892 770 aa13□□□□□ -0.33
USP28-205ENST00000537706 SBF1O95248 1867 aa13□□□□□ -0.33
USP28-205ENST00000537706 PRPF38BQ5VTL8 546 aaKnown RBP13□□□□□ -0.33
USP28-205ENST00000537706 ABT1Q9ULW3 272 aaKnown RBP13□□□□□ -0.33
USP28-205ENST00000537706 ATG3Q9NT62 314 aa12.99□□□□□ -0.33
USP28-205ENST00000537706 CLEC11AQ9Y240 323 aa12.99□□□□□ -0.33
USP28-205ENST00000537706 PAXIP1Q6ZW49 1069 aaPredicted RBP12.98□□□□□ -0.33
USP28-205ENST00000537706 SLC12A5Q9H2X9 1139 aa12.98□□□□□ -0.33
USP28-205ENST00000537706 ROCK2O75116 1388 aaKnown RBP12.98□□□□□ -0.33
USP28-205ENST00000537706 DDR1Q08345 913 aa12.98□□□□□ -0.33
USP28-205ENST00000537706 MCOLN1Q9GZU1 580 aa12.98□□□□□ -0.33
USP28-205ENST00000537706 MAP2P11137 1827 aaKnown RBP12.97□□□□□ -0.33
USP28-205ENST00000537706 POTEIP0CG38 1075 aa12.97□□□□□ -0.33
USP28-205ENST00000537706 POTEJP0CG39 1038 aa12.97□□□□□ -0.33
USP28-205ENST00000537706 FKBP8Q14318 412 aa12.97□□□□□ -0.33
USP28-205ENST00000537706 A0A1W2PP64 1363 aa12.97□□□□□ -0.33
USP28-205ENST00000537706 USP42Q9H9J4 1324 aaKnown RBP12.96□□□□□ -0.33
USP28-205ENST00000537706 TIAM2Q8IVF5 1701 aa12.96□□□□□ -0.33
USP28-205ENST00000537706 H0YIN7 160 aa12.96□□□□□ -0.33
USP28-205ENST00000537706 NFKBIEO00221 500 aa12.96□□□□□ -0.33
USP28-205ENST00000537706 POLRMTO00411 1230 aaKnown RBP12.96□□□□□ -0.33
USP28-205ENST00000537706 CA12O43570 354 aa12.96□□□□□ -0.33
USP28-205ENST00000537706 ZPR1O75312 459 aa12.96□□□□□ -0.33
USP28-205ENST00000537706 RRS1Q15050 365 aaKnown RBP12.96□□□□□ -0.33
USP28-205ENST00000537706 EAPPQ56P03 285 aaPredicted RBP12.96□□□□□ -0.33
USP28-205ENST00000537706 IFNL2Q8IZJ0 200 aa12.96□□□□□ -0.33
USP28-205ENST00000537706 ITGB4P16144 1822 aa12.96□□□□□ -0.33
USP28-205ENST00000537706 C2CD5Q86YS7 1000 aa12.96□□□□□ -0.34
USP28-205ENST00000537706 SRP68Q9UHB9 627 aaKnown RBP12.96□□□□□ -0.34
USP28-205ENST00000537706 INSRP06213 1382 aa12.95□□□□□ -0.34
USP28-205ENST00000537706 KDRP35968 1356 aa12.95□□□□□ -0.34
USP28-205ENST00000537706 DDNO94850 711 aaPredicted RBP12.95□□□□□ -0.34
USP28-205ENST00000537706 GCC1Q96CN9 775 aa12.95□□□□□ -0.34
USP28-205ENST00000537706 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.95□□□□□ -0.343e-6■□□□□ 9.2
USP28-205ENST00000537706 RGPD2P0DJD1 1756 aa12.95□□□□□ -0.34
USP28-205ENST00000537706 DGKZQ13574 1117 aa12.94□□□□□ -0.34
USP28-205ENST00000537706 TAF1DQ9H5J8 278 aaPredicted RBP12.94□□□□□ -0.34
USP28-205ENST00000537706 PDZRN3Q9UPQ7 1066 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 243.2 ms