RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SPON1Q9HCB6 807 aa15.67■□□□□ 0.1
CLIP1-208ENST00000537004 ATG3Q9NT62 314 aa15.67■□□□□ 0.1
CLIP1-208ENST00000537004 TFCP2L1Q9NZI6 479 aa15.67■□□□□ 0.1
CLIP1-208ENST00000537004 PLEKHG2Q9H7P9 1386 aa15.67■□□□□ 0.1
CLIP1-208ENST00000537004 CFAP53Q96M91 514 aa15.67■□□□□ 0.1
CLIP1-208ENST00000537004 LGR6Q9HBX8 967 aa15.67■□□□□ 0.1
CLIP1-208ENST00000537004 ERVV-2B6SEH9 535 aa15.66■□□□□ 0.1
CLIP1-208ENST00000537004 HSP90AB1P08238 724 aaKnown RBP15.66■□□□□ 0.1
CLIP1-208ENST00000537004 SMIM5Q71RC9 77 aa15.66■□□□□ 0.1
CLIP1-208ENST00000537004 NFATC2IPQ8NCF5 419 aa15.66■□□□□ 0.1
CLIP1-208ENST00000537004 LOC102724428A0A0B4J2F2 783 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 SIK1P57059 783 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 CABP4P57796 275 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 SMARCC1Q92922 1105 aaPredicted RBP15.65■□□□□ 0.1
CLIP1-208ENST00000537004 ITGB4P16144 1822 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 LRP5O75197 1615 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 PNPLA7Q6ZV29 1317 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 AKAP4Q5JQC9 854 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 ERICH6BQ5W0A0 696 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 AMIGO3Q86WK7 504 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 LY75O60449 1722 aa15.65■□□□□ 0.1
CLIP1-208ENST00000537004 PHACTR3Q96KR7 559 aa15.64■□□□□ 0.09
CLIP1-208ENST00000537004 U2AF1L5P0DN76 240 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-208ENST00000537004 PTGER2P43116 358 aa15.63■□□□□ 0.09
CLIP1-208ENST00000537004 U2AF1Q01081 240 aaKnown RBP eCLIP15.63■□□□□ 0.09
CLIP1-208ENST00000537004 ITPK1Q13572 414 aa15.63■□□□□ 0.09
CLIP1-208ENST00000537004 SLC4A9Q96Q91 983 aa15.63■□□□□ 0.09
CLIP1-208ENST00000537004 PRKAR2BP31323 418 aa15.63■□□□□ 0.09
CLIP1-208ENST00000537004 CASZ1Q86V15 1759 aa15.63■□□□□ 0.09
CLIP1-208ENST00000537004 RNF123Q5XPI4 1314 aa15.63■□□□□ 0.09
CLIP1-208ENST00000537004 ATP6V1AP38606 617 aa15.62■□□□□ 0.09
CLIP1-208ENST00000537004 LINC00116Q8NCU8 138 aa15.62■□□□□ 0.09
CLIP1-208ENST00000537004 RBM42Q9BTD8 480 aaKnown RBP15.62■□□□□ 0.09
CLIP1-208ENST00000537004 RSPH6AQ9H0K4 717 aa15.62■□□□□ 0.09
CLIP1-208ENST00000537004 PPP1R1BQ9UD71 204 aaPredicted RBP15.62■□□□□ 0.09
CLIP1-208ENST00000537004 PTCD1O75127 700 aaKnown RBP15.61■□□□□ 0.09
CLIP1-208ENST00000537004 MTFR1LQ9H019 292 aa15.61■□□□□ 0.09
CLIP1-208ENST00000537004 RNMTO43148 476 aaKnown RBP15.61■□□□□ 0.09
CLIP1-208ENST00000537004 MSH5O43196 834 aa15.61■□□□□ 0.09
CLIP1-208ENST00000537004 COL23A1Q86Y22 540 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-208ENST00000537004 CDCA7LQ96GN5 454 aa15.6■□□□□ 0.09
CLIP1-208ENST00000537004 SGIP1Q9BQI5 828 aa15.6■□□□□ 0.09
CLIP1-208ENST00000537004 PHF14O94880 888 aa15.59■□□□□ 0.09
CLIP1-208ENST00000537004 SLC39A6Q13433 755 aa15.59■□□□□ 0.09
CLIP1-208ENST00000537004 CCDC146Q8IYE0 955 aa15.59■□□□□ 0.09
CLIP1-208ENST00000537004 SLC52A2Q9HAB3 445 aa15.59■□□□□ 0.09
CLIP1-208ENST00000537004 AK7Q96M32 723 aa15.58■□□□□ 0.09
CLIP1-208ENST00000537004 MSL1Q68DK7 614 aa15.58■□□□□ 0.08
CLIP1-208ENST00000537004 IL17REQ8NFR9 667 aa15.58■□□□□ 0.08
CLIP1-208ENST00000537004 ZNF521Q96K83 1311 aa15.56■□□□□ 0.08
CLIP1-208ENST00000537004 GNAT3A8MTJ3 354 aa15.56■□□□□ 0.08
CLIP1-208ENST00000537004 GAS2L2Q8NHY3 880 aa15.56■□□□□ 0.08
CLIP1-208ENST00000537004 PPP4R2Q9NY27 417 aa15.56■□□□□ 0.08
CLIP1-208ENST00000537004 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.56■□□□□ 0.08
CLIP1-208ENST00000537004 GNPATO15228 680 aa15.56■□□□□ 0.08
CLIP1-208ENST00000537004 FCHSD2O94868 740 aa15.56■□□□□ 0.08
CLIP1-208ENST00000537004 RCAN3Q9UKA8 241 aa15.56■□□□□ 0.08
CLIP1-208ENST00000537004 C5P01031 1676 aa15.56■□□□□ 0.08
CLIP1-208ENST00000537004 TUBGCP6Q96RT7 1819 aa15.55■□□□□ 0.08
CLIP1-208ENST00000537004 MAP3K5Q99683 1374 aa15.55■□□□□ 0.08
CLIP1-208ENST00000537004 C4BP0C0L5 1744 aa15.55■□□□□ 0.08
CLIP1-208ENST00000537004 APAF1O14727 1248 aa15.55■□□□□ 0.08
CLIP1-208ENST00000537004 SLC16A10Q8TF71 515 aa15.55■□□□□ 0.08
CLIP1-208ENST00000537004 FHDC1Q9C0D6 1143 aaPredicted RBP15.54■□□□□ 0.08
CLIP1-208ENST00000537004 DCTN1Q14203 1278 aa15.53■□□□□ 0.08
CLIP1-208ENST00000537004 ARXQ96QS3 562 aa15.53■□□□□ 0.08
CLIP1-208ENST00000537004 TAF1LQ8IZX4 1826 aa15.53■□□□□ 0.08
CLIP1-208ENST00000537004 MCM10Q7L590 875 aa15.53■□□□□ 0.08
CLIP1-208ENST00000537004 SCN11AQ9UI33 1791 aa15.53■□□□□ 0.08
CLIP1-208ENST00000537004 GOLGA2Q08379 1002 aa15.52■□□□□ 0.08
CLIP1-208ENST00000537004 TEFQ10587 303 aa15.52■□□□□ 0.08
CLIP1-208ENST00000537004 NGEFQ8N5V2 710 aa15.52■□□□□ 0.08
CLIP1-208ENST00000537004 MRC1P22897 1456 aa15.52■□□□□ 0.07
CLIP1-208ENST00000537004 DNAJC10Q8IXB1 793 aa15.51■□□□□ 0.07
CLIP1-208ENST00000537004 RRP1P56182 461 aaKnown RBP15.51■□□□□ 0.07
CLIP1-208ENST00000537004 KLHL34Q8N239 644 aa15.51■□□□□ 0.07
CLIP1-208ENST00000537004 FLAD1Q8NFF5 587 aa15.51■□□□□ 0.07
CLIP1-208ENST00000537004 PLEKHF1Q96S99 279 aa15.51■□□□□ 0.07
CLIP1-208ENST00000537004 SYT17Q9BSW7 474 aa15.51■□□□□ 0.07
CLIP1-208ENST00000537004 SSFA2P28290 1259 aa15.5■□□□□ 0.07
CLIP1-208ENST00000537004 CRKLP46109 303 aaKnown RBP15.5■□□□□ 0.07
CLIP1-208ENST00000537004 KCNQ3O43525 872 aa15.5■□□□□ 0.07
CLIP1-208ENST00000537004 HMGB2P26583 209 aaKnown RBP15.5■□□□□ 0.07
CLIP1-208ENST00000537004 POLD1P28340 1107 aa15.5■□□□□ 0.07
CLIP1-208ENST00000537004 DUSP27Q5VZP5 1158 aa15.5■□□□□ 0.07
CLIP1-208ENST00000537004 RUNDC1Q96C34 613 aa15.5■□□□□ 0.07
CLIP1-208ENST00000537004 RTCBQ9Y3I0 505 aaKnown RBP15.5■□□□□ 0.07
CLIP1-208ENST00000537004 CEMIPQ8WUJ3 1361 aa15.5■□□□□ 0.07
CLIP1-208ENST00000537004 ADAMTS7Q9UKP4 1686 aa15.49■□□□□ 0.07
CLIP1-208ENST00000537004 QSER1Q2KHR3 1735 aa15.49■□□□□ 0.07
CLIP1-208ENST00000537004 RC3H1Q5TC82 1133 aaKnown RBP15.48■□□□□ 0.07
CLIP1-208ENST00000537004 ZNF790Q6PG37 636 aa15.48■□□□□ 0.07
CLIP1-208ENST00000537004 ARHGEF1Q92888 912 aaKnown RBP15.48■□□□□ 0.07
CLIP1-208ENST00000537004 ZNF496Q96IT1 587 aaPredicted RBP15.48■□□□□ 0.07
CLIP1-208ENST00000537004 CNTNAP4Q9C0A0 1308 aa15.48■□□□□ 0.07
CLIP1-208ENST00000537004 SLFN5Q08AF3 891 aa15.48■□□□□ 0.07
CLIP1-208ENST00000537004 TRAPPC3LQ5T215 181 aa15.48■□□□□ 0.07
CLIP1-208ENST00000537004 INTS5Q6P9B9 1019 aaKnown RBP15.48■□□□□ 0.07
CLIP1-208ENST00000537004 TTC5Q8N0Z6 440 aa15.48■□□□□ 0.07
CLIP1-208ENST00000537004 RTF1Q92541 710 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms