RNA–Protein interactions for RNA: ENST00000536634.5

CLIP1-207, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-207ENST00000536634 PSME1Q06323 249 aa10.73□□□□□ -0.69
CLIP1-207ENST00000536634 SENP3-EIF4A1A0A087X0R7 540 aa10.72□□□□□ -0.69
CLIP1-207ENST00000536634 ZBTB7BO15156 539 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-207ENST00000536634 WIPF1O43516 503 aa10.72□□□□□ -0.69
CLIP1-207ENST00000536634 NFX1Q12986 1120 aaKnown RBP10.72□□□□□ -0.69
CLIP1-207ENST00000536634 TRIM50Q86XT4 487 aa10.72□□□□□ -0.69
CLIP1-207ENST00000536634 SERTAD1Q9UHV2 236 aa10.72□□□□□ -0.69
CLIP1-207ENST00000536634 WASLO00401 505 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-207ENST00000536634 INSM1Q01101 510 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-207ENST00000536634 POU4F2Q12837 409 aa10.71□□□□□ -0.69
CLIP1-207ENST00000536634 KANK4Q5T7N3 995 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-207ENST00000536634 LCE2CQ5TA81 110 aa10.71□□□□□ -0.69
CLIP1-207ENST00000536634 OGFOD1Q8N543 542 aa10.71□□□□□ -0.69
CLIP1-207ENST00000536634 EIF4G1Q04637 1599 aaKnown RBP10.7□□□□□ -0.7
CLIP1-207ENST00000536634 SHROOM4Q9ULL8 1493 aa10.7□□□□□ -0.7
CLIP1-207ENST00000536634 TLR1Q15399 786 aa10.7□□□□□ -0.7
CLIP1-207ENST00000536634 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.7□□□□□ -0.7
CLIP1-207ENST00000536634 C1orf115Q9H7X2 142 aa10.7□□□□□ -0.7
CLIP1-207ENST00000536634 DNAAF2Q9NVR5 837 aaKnown RBP10.7□□□□□ -0.7
CLIP1-207ENST00000536634 TIMELESSQ9UNS1 1208 aa10.7□□□□□ -0.7
CLIP1-207ENST00000536634 SLC35F4A4IF30 521 aa10.69□□□□□ -0.7
CLIP1-207ENST00000536634 H3BM21 787 aa10.69□□□□□ -0.7
CLIP1-207ENST00000536634 PPFIA3O75145 1194 aa10.69□□□□□ -0.7
CLIP1-207ENST00000536634 CCDC155Q8N6L0 562 aa10.69□□□□□ -0.7
CLIP1-207ENST00000536634 TPCN2Q8NHX9 752 aa10.69□□□□□ -0.7
CLIP1-207ENST00000536634 ZSCAN10Q96SZ4 725 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-207ENST00000536634 ZNF358Q9NW07 568 aa10.69□□□□□ -0.7
CLIP1-207ENST00000536634 SPATA31C2B4DYI2 1134 aa10.68□□□□□ -0.7
CLIP1-207ENST00000536634 DKK1O94907 266 aa10.68□□□□□ -0.7
CLIP1-207ENST00000536634 RFX1P22670 979 aa10.68□□□□□ -0.7
CLIP1-207ENST00000536634 ATP1A2P50993 1020 aa10.68□□□□□ -0.7
CLIP1-207ENST00000536634 NBPF10Q6P3W6 841 aaKnown RBP10.68□□□□□ -0.7
CLIP1-207ENST00000536634 NBPF15Q8N660 670 aa10.68□□□□□ -0.7
CLIP1-207ENST00000536634 ZNF594Q96JF6 807 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-207ENST00000536634 RASA1P20936 1047 aa10.67□□□□□ -0.7
CLIP1-207ENST00000536634 SMTNP53814 917 aa10.67□□□□□ -0.7
CLIP1-207ENST00000536634 CRTC2Q53ET0 693 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-207ENST00000536634 CCDC102BQ68D86 513 aa10.67□□□□□ -0.7
CLIP1-207ENST00000536634 SLC4A9Q96Q91 983 aa10.67□□□□□ -0.7
CLIP1-207ENST00000536634 NPAS3Q8IXF0 933 aa10.66□□□□□ -0.7
CLIP1-207ENST00000536634 LARGE2Q8N3Y3 721 aa10.66□□□□□ -0.7
CLIP1-207ENST00000536634 USP3Q9Y6I4 520 aa10.66□□□□□ -0.7
CLIP1-207ENST00000536634 ERBB4Q15303 1308 aa10.65□□□□□ -0.7
CLIP1-207ENST00000536634 PHKA2P46019 1235 aa10.65□□□□□ -0.7
CLIP1-207ENST00000536634 CDCA8Q53HL2 280 aa10.65□□□□□ -0.7
CLIP1-207ENST00000536634 TMEM214Q6NUQ4 689 aaKnown RBP10.65□□□□□ -0.7
CLIP1-207ENST00000536634 TAS1R3Q7RTX0 852 aa10.65□□□□□ -0.7
CLIP1-207ENST00000536634 PPARGC1BQ86YN6 1023 aaKnown RBP10.65□□□□□ -0.7
CLIP1-207ENST00000536634 SIX5Q8N196 739 aa10.65□□□□□ -0.7
CLIP1-207ENST00000536634 VRTNQ9H8Y1 702 aa10.65□□□□□ -0.7
CLIP1-207ENST00000536634 SFI1A8K8P3 1242 aa10.64□□□□□ -0.71
CLIP1-207ENST00000536634 PTK7Q13308 1070 aa10.64□□□□□ -0.71
CLIP1-207ENST00000536634 C4orf17Q53FE4 359 aa10.64□□□□□ -0.71
CLIP1-207ENST00000536634 SCRIBQ14160 1630 aa10.63□□□□□ -0.71
CLIP1-207ENST00000536634 A6NJY4 79 aa10.63□□□□□ -0.71
CLIP1-207ENST00000536634 EPHA4P54764 986 aa10.63□□□□□ -0.71
CLIP1-207ENST00000536634 MTFR1Q15390 333 aa10.63□□□□□ -0.71
CLIP1-207ENST00000536634 GNASQ5JWF2 1037 aa10.63□□□□□ -0.71
CLIP1-207ENST00000536634 CCDC82Q8N4S0 544 aa10.63□□□□□ -0.71
CLIP1-207ENST00000536634 CCDC97Q96F63 343 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-207ENST00000536634 CUEDC1Q9NWM3 386 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-207ENST00000536634 IQSEC3Q9UPP2 1182 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L15C9J2P7 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L10C9JJH3 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L13C9JLJ4 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L12C9JPN9 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L11C9JVI0 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L21D6R901 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L18D6R9N7 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L22D6RA61 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L17D6RBQ6 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L19D6RCP7 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L20D6RJB6 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 BACH1O14867 736 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 ITGA6P23229 1130 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 USP17L24Q0WX57 530 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 LARP1Q6PKG0 1096 aaKnown RBP10.62□□□□□ -0.71
CLIP1-207ENST00000536634 TNS4Q8IZW8 715 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 ZNF295-AS1Q8N0V1 137 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 RHBDD1Q8TEB9 315 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 SLC16A10Q8TF71 515 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 TIMMDC1Q9NPL8 285 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 SERPINA10Q9UK55 444 aa10.62□□□□□ -0.71
CLIP1-207ENST00000536634 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-207ENST00000536634 GTF2E1P29083 439 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-207ENST00000536634 WDR44Q5JSH3 913 aa10.61□□□□□ -0.71
CLIP1-207ENST00000536634 DYRK1BQ9Y463 629 aa10.61□□□□□ -0.71
CLIP1-207ENST00000536634 FAM196BA6NMK8 535 aa10.6□□□□□ -0.71
CLIP1-207ENST00000536634 CDK2AP1O14519 115 aa10.6□□□□□ -0.71
CLIP1-207ENST00000536634 SRPK2P78362 688 aaKnown RBP10.6□□□□□ -0.71
CLIP1-207ENST00000536634 FOXK2Q01167 660 aa10.6□□□□□ -0.71
CLIP1-207ENST00000536634 ERICH6Q7L0X2 663 aa10.6□□□□□ -0.71
CLIP1-207ENST00000536634 TSEN2Q8NCE0 465 aaKnown RBP10.6□□□□□ -0.71
CLIP1-207ENST00000536634 SCHIP1Q9P0W5 487 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-207ENST00000536634 PLA2G4AP47712 749 aa10.59□□□□□ -0.71
CLIP1-207ENST00000536634 DPYDQ12882 1025 aa10.59□□□□□ -0.71
CLIP1-207ENST00000536634 TBCELQ5QJ74 424 aa10.59□□□□□ -0.71
CLIP1-207ENST00000536634 ARXQ96QS3 562 aa10.59□□□□□ -0.71
CLIP1-207ENST00000536634 GAS2L1Q99501 681 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-207ENST00000536634 ZCCHC6Q5VYS8 1495 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms