RNA–Protein interactions for RNA: ENST00000535958.1

TNFRSF1A-207, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 4

Gene TNFRSF1A, Length 568 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-207ENST00000535958 AMIGO3Q86WK7 504 aa17.83■□□□□ 0.44
TNFRSF1A-207ENST00000535958 ITPK1Q13572 414 aa17.82■□□□□ 0.44
TNFRSF1A-207ENST00000535958 RTCBQ9Y3I0 505 aaKnown RBP17.82■□□□□ 0.44
TNFRSF1A-207ENST00000535958 RBM42Q9BTD8 480 aaKnown RBP17.81■□□□□ 0.44
TNFRSF1A-207ENST00000535958 ADCY9O60503 1353 aa17.8■□□□□ 0.44
TNFRSF1A-207ENST00000535958 MMP10P09238 476 aa17.8■□□□□ 0.44
TNFRSF1A-207ENST00000535958 PLEKHO1Q53GL0 409 aaPredicted RBP17.8■□□□□ 0.44
TNFRSF1A-207ENST00000535958 TRAPPC3LQ5T215 181 aa17.8■□□□□ 0.44
TNFRSF1A-207ENST00000535958 ATG3Q9NT62 314 aa17.8■□□□□ 0.44
TNFRSF1A-207ENST00000535958 ERVV-2B6SEH9 535 aa17.79■□□□□ 0.44
TNFRSF1A-207ENST00000535958 DCAF5Q96JK2 942 aa17.79■□□□□ 0.44
TNFRSF1A-207ENST00000535958 CLSPNQ9HAW4 1339 aa17.78■□□□□ 0.44
TNFRSF1A-207ENST00000535958 CABP4P57796 275 aa17.78■□□□□ 0.44
TNFRSF1A-207ENST00000535958 CICQ96RK0 1608 aaPredicted RBP17.78■□□□□ 0.44
TNFRSF1A-207ENST00000535958 KDRP35968 1356 aa17.78■□□□□ 0.44
TNFRSF1A-207ENST00000535958 EIF4G2P78344 907 aaKnown RBP eCLIP17.77■□□□□ 0.44
TNFRSF1A-207ENST00000535958 AMOTQ4VCS5 1084 aa17.77■□□□□ 0.44
TNFRSF1A-207ENST00000535958 C1orf141Q5JVX7 400 aa17.77■□□□□ 0.44
TNFRSF1A-207ENST00000535958 ZNF530Q6P9A1 599 aaPredicted RBP17.77■□□□□ 0.44
TNFRSF1A-207ENST00000535958 NLGN1Q8N2Q7 840 aa17.77■□□□□ 0.44
TNFRSF1A-207ENST00000535958 PCGF6Q9BYE7 350 aa17.77■□□□□ 0.44
TNFRSF1A-207ENST00000535958 ADRA2BP18089 450 aa17.76■□□□□ 0.43
TNFRSF1A-207ENST00000535958 RFC4P35249 363 aa17.76■□□□□ 0.43
TNFRSF1A-207ENST00000535958 CCDC87Q9NVE4 849 aa17.76■□□□□ 0.43
TNFRSF1A-207ENST00000535958 ZNF831Q5JPB2 1677 aa17.75■□□□□ 0.43
TNFRSF1A-207ENST00000535958 TGFB2P61812 414 aa17.75■□□□□ 0.43
TNFRSF1A-207ENST00000535958 BCS1LQ9Y276 419 aa17.75■□□□□ 0.43
TNFRSF1A-207ENST00000535958 CNTNAP4Q9C0A0 1308 aa17.74■□□□□ 0.43
TNFRSF1A-207ENST00000535958 MORC1Q86VD1 984 aa17.74■□□□□ 0.43
TNFRSF1A-207ENST00000535958 PARP3Q9Y6F1 533 aa17.74■□□□□ 0.43
TNFRSF1A-207ENST00000535958 COL5A3P25940 1745 aaPredicted RBP17.74■□□□□ 0.43
TNFRSF1A-207ENST00000535958 PXDNLA1KZ92 1463 aa17.74■□□□□ 0.43
TNFRSF1A-207ENST00000535958 HSPA6P17066 643 aa17.73■□□□□ 0.43
TNFRSF1A-207ENST00000535958 MTHFSP49914 203 aa17.73■□□□□ 0.43
TNFRSF1A-207ENST00000535958 RC3H1Q5TC82 1133 aaKnown RBP17.73■□□□□ 0.43
TNFRSF1A-207ENST00000535958 PANK3Q9H999 370 aa17.73■□□□□ 0.43
TNFRSF1A-207ENST00000535958 C10orf71Q711Q0 1435 aa17.72■□□□□ 0.43
TNFRSF1A-207ENST00000535958 KIF13BQ9NQT8 1826 aa17.72■□□□□ 0.43
TNFRSF1A-207ENST00000535958 N4BP2Q86UW6 1770 aaPredicted RBP17.72■□□□□ 0.43
TNFRSF1A-207ENST00000535958 ARHGEF1Q92888 912 aaKnown RBP17.72■□□□□ 0.43
TNFRSF1A-207ENST00000535958 C4AP0C0L4 1744 aa17.72■□□□□ 0.43
TNFRSF1A-207ENST00000535958 KDM6AO15550 1401 aaPredicted RBP17.72■□□□□ 0.43
TNFRSF1A-207ENST00000535958 PTCD1O75127 700 aaKnown RBP17.71■□□□□ 0.43
TNFRSF1A-207ENST00000535958 RPS6KA4O75676 772 aa17.71■□□□□ 0.43
TNFRSF1A-207ENST00000535958 HSPA5P11021 654 aaKnown RBP17.71■□□□□ 0.43
TNFRSF1A-207ENST00000535958 A0A0G2JLW4 131 aa17.7■□□□□ 0.42
TNFRSF1A-207ENST00000535958 FCHSD2O94868 740 aa17.7■□□□□ 0.42
TNFRSF1A-207ENST00000535958 KNSTRNQ9Y448 316 aa17.7■□□□□ 0.42
TNFRSF1A-207ENST00000535958 GYS1P13807 737 aa17.69■□□□□ 0.42
TNFRSF1A-207ENST00000535958 ARHGAP27Q6ZUM4 889 aa17.69■□□□□ 0.42
TNFRSF1A-207ENST00000535958 SLC4A9Q96Q91 983 aa17.69■□□□□ 0.42
TNFRSF1A-207ENST00000535958 CEP350Q5VT06 3117 aa17.68■□□□□ 0.42
TNFRSF1A-207ENST00000535958 SULT6B1Q6IMI4 303 aa17.68■□□□□ 0.42
TNFRSF1A-207ENST00000535958 AEBP1Q8IUX7 1158 aa17.68■□□□□ 0.42
TNFRSF1A-207ENST00000535958 KIAA1551Q9HCM1 1747 aa17.68■□□□□ 0.42
TNFRSF1A-207ENST00000535958 DPEP1P16444 411 aa17.67■□□□□ 0.42
TNFRSF1A-207ENST00000535958 CRKLP46109 303 aaKnown RBP17.67■□□□□ 0.42
TNFRSF1A-207ENST00000535958 IFFO2Q5TF58 517 aa17.66■□□□□ 0.42
TNFRSF1A-207ENST00000535958 NFATC2IPQ8NCF5 419 aa17.66■□□□□ 0.42
TNFRSF1A-207ENST00000535958 KIF3CO14782 793 aa17.65■□□□□ 0.42
TNFRSF1A-207ENST00000535958 C16orf71Q8IYS4 520 aaPredicted RBP17.64■□□□□ 0.41
TNFRSF1A-207ENST00000535958 PIM2Q9P1W9 311 aa17.64■□□□□ 0.41
TNFRSF1A-207ENST00000535958 USP42Q9H9J4 1324 aaKnown RBP17.64■□□□□ 0.41
TNFRSF1A-207ENST00000535958 MYH14Q7Z406 1995 aaKnown RBP17.64■□□□□ 0.41
TNFRSF1A-207ENST00000535958 TJP1Q07157 1748 aa17.64■□□□□ 0.41
TNFRSF1A-207ENST00000535958 ZPR1O75312 459 aa17.63■□□□□ 0.41
TNFRSF1A-207ENST00000535958 TOMM70O94826 608 aa17.63■□□□□ 0.41
TNFRSF1A-207ENST00000535958 SRP68Q9UHB9 627 aaKnown RBP17.63■□□□□ 0.41
TNFRSF1A-207ENST00000535958 SCN11AQ9UI33 1791 aa17.63■□□□□ 0.41
TNFRSF1A-207ENST00000535958 APLP1P51693 650 aa17.62■□□□□ 0.41
TNFRSF1A-207ENST00000535958 DALRD3Q5D0E6 543 aaKnown RBP17.62■□□□□ 0.41
TNFRSF1A-207ENST00000535958 AKAP4Q5JQC9 854 aa17.62■□□□□ 0.41
TNFRSF1A-207ENST00000535958 CCER1Q8TC90 406 aaPredicted RBP17.62■□□□□ 0.41
TNFRSF1A-207ENST00000535958 BRCA1P38398 1863 aaKnown RBP17.62■□□□□ 0.41
TNFRSF1A-207ENST00000535958 ARFGEF1Q9Y6D6 1849 aa17.61■□□□□ 0.41
TNFRSF1A-207ENST00000535958 FKBP8Q14318 412 aa17.6■□□□□ 0.41
TNFRSF1A-207ENST00000535958 C9orf131Q5VYM1 1079 aa17.6■□□□□ 0.41
TNFRSF1A-207ENST00000535958 SLC52A2Q9HAB3 445 aa17.6■□□□□ 0.41
TNFRSF1A-207ENST00000535958 KDM2BQ8NHM5 1336 aa17.59■□□□□ 0.41
TNFRSF1A-207ENST00000535958 IL13P35225 146 aa17.59■□□□□ 0.41
TNFRSF1A-207ENST00000535958 DDR1Q08345 913 aa17.58■□□□□ 0.4
TNFRSF1A-207ENST00000535958 DNAJC10Q8IXB1 793 aa17.58■□□□□ 0.4
TNFRSF1A-207ENST00000535958 NMRK2Q9NPI5 230 aa17.58■□□□□ 0.4
TNFRSF1A-207ENST00000535958 RNF181Q9P0P0 153 aa17.58■□□□□ 0.4
TNFRSF1A-207ENST00000535958 HMOX1P09601 288 aa17.57■□□□□ 0.4
TNFRSF1A-207ENST00000535958 USPL1Q5W0Q7 1092 aa17.57■□□□□ 0.4
TNFRSF1A-207ENST00000535958 MRC1P22897 1456 aa17.56■□□□□ 0.4
TNFRSF1A-207ENST00000535958 POLRMTO00411 1230 aaKnown RBP17.56■□□□□ 0.4
TNFRSF1A-207ENST00000535958 KCNA3P22001 575 aa17.56■□□□□ 0.4
TNFRSF1A-207ENST00000535958 CHRNA5P30532 468 aa17.56■□□□□ 0.4
TNFRSF1A-207ENST00000535958 INTS5Q6P9B9 1019 aaKnown RBP17.56■□□□□ 0.4
TNFRSF1A-207ENST00000535958 COL15A1P39059 1388 aa17.55■□□□□ 0.4
TNFRSF1A-207ENST00000535958 SOS1Q07889 1333 aaPredicted RBP17.55■□□□□ 0.4
TNFRSF1A-207ENST00000535958 RNMTO43148 476 aaKnown RBP17.55■□□□□ 0.4
TNFRSF1A-207ENST00000535958 TTC5Q8N0Z6 440 aa17.55■□□□□ 0.4
TNFRSF1A-207ENST00000535958 RBM46Q8TBY0 533 aaKnown RBP17.55■□□□□ 0.4
TNFRSF1A-207ENST00000535958 VIRMAQ69YN4 1812 aaKnown RBP17.54■□□□□ 0.4
TNFRSF1A-207ENST00000535958 SLC39A6Q13433 755 aa17.54■□□□□ 0.4
TNFRSF1A-207ENST00000535958 LGR6Q9HBX8 967 aa17.54■□□□□ 0.4
TNFRSF1A-207ENST00000535958 KCPQ6ZWJ8 1503 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms