RNA–Protein interactions for RNA: ENST00000535927.5

VAMP1-205, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 578 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-205ENST00000535927 CHL1O00533 1208 aa21.13■□□□□ 0.97
VAMP1-205ENST00000535927 HMGB2P26583 209 aaKnown RBP21.13■□□□□ 0.97
VAMP1-205ENST00000535927 BRWD3Q6RI45 1802 aa21.13■□□□□ 0.97
VAMP1-205ENST00000535927 CHMP4AQ9BY43 222 aa21.12■□□□□ 0.97
VAMP1-205ENST00000535927 TMOD3Q9NYL9 352 aa21.12■□□□□ 0.97
VAMP1-205ENST00000535927 SLFN5Q08AF3 891 aa21.11■□□□□ 0.97
VAMP1-205ENST00000535927 SF3B2Q13435 895 aaKnown RBP21.11■□□□□ 0.97
VAMP1-205ENST00000535927 DCTN1Q14203 1278 aa21.11■□□□□ 0.97
VAMP1-205ENST00000535927 TRMT2AQ8IZ69 625 aaKnown RBP21.11■□□□□ 0.97
VAMP1-205ENST00000535927 SOS1Q07889 1333 aaPredicted RBP21.1■□□□□ 0.97
VAMP1-205ENST00000535927 NFATC2IPQ8NCF5 419 aa21.1■□□□□ 0.97
VAMP1-205ENST00000535927 YTHDC1Q96MU7 727 aaKnown RBP21.1■□□□□ 0.97
VAMP1-205ENST00000535927 SIPA1L3O60292 1781 aaPredicted RBP21.1■□□□□ 0.97
VAMP1-205ENST00000535927 BTBD11A6QL63 1104 aa21.09■□□□□ 0.97
VAMP1-205ENST00000535927 ITGB4P16144 1822 aa21.08■□□□□ 0.97
VAMP1-205ENST00000535927 SMARCC1Q92922 1105 aaPredicted RBP21.08■□□□□ 0.97
VAMP1-205ENST00000535927 CT47B1P0C2W7 299 aaPredicted RBP21.07■□□□□ 0.96
VAMP1-205ENST00000535927 PRIM1P49642 420 aaKnown RBP21.07■□□□□ 0.96
VAMP1-205ENST00000535927 THUMPD2Q9BTF0 503 aaKnown RBP21.07■□□□□ 0.96
VAMP1-205ENST00000535927 BCL11BQ9C0K0 894 aaPredicted RBP21.07■□□□□ 0.96
VAMP1-205ENST00000535927 TSPYL4Q9UJ04 414 aa21.06■□□□□ 0.96
VAMP1-205ENST00000535927 SBF2Q86WG5 1849 aa21.06■□□□□ 0.96
VAMP1-205ENST00000535927 DEFB132Q7Z7B7 95 aa21.05■□□□□ 0.96
VAMP1-205ENST00000535927 TTC5Q8N0Z6 440 aa21.05■□□□□ 0.96
VAMP1-205ENST00000535927 PIGBQ92521 554 aa21.05■□□□□ 0.96
VAMP1-205ENST00000535927 ZNF790Q6PG37 636 aa21.04■□□□□ 0.96
VAMP1-205ENST00000535927 ZNF428Q96B54 188 aa21.04■□□□□ 0.96
VAMP1-205ENST00000535927 DOT1LQ8TEK3 1739 aa21.04■□□□□ 0.96
VAMP1-205ENST00000535927 TOGARAM1Q9Y4F4 1720 aa21.04■□□□□ 0.96
VAMP1-205ENST00000535927 NHSQ6T4R5 1651 aa21.03■□□□□ 0.96
VAMP1-205ENST00000535927 HOXB7P09629 217 aa21.03■□□□□ 0.96
VAMP1-205ENST00000535927 MBIPQ9NS73 344 aa21.03■□□□□ 0.96
VAMP1-205ENST00000535927 LAS1LQ9Y4W2 734 aaKnown RBP21.03■□□□□ 0.96
VAMP1-205ENST00000535927 DUSP27Q5VZP5 1158 aa21.02■□□□□ 0.96
VAMP1-205ENST00000535927 VSIG10Q8N0Z9 540 aa21.02■□□□□ 0.96
VAMP1-205ENST00000535927 SYTL4Q96C24 671 aaPredicted RBP21.02■□□□□ 0.96
VAMP1-205ENST00000535927 KDM3BQ7LBC6 1761 aa21.02■□□□□ 0.96
VAMP1-205ENST00000535927 FMNL2Q96PY5 1086 aa21.01■□□□□ 0.95
VAMP1-205ENST00000535927 TEX13AQ9BXU3 409 aaPredicted RBP21.01■□□□□ 0.95
VAMP1-205ENST00000535927 FANCIQ9NVI1 1328 aa21.01■□□□□ 0.95
VAMP1-205ENST00000535927 SENP3-EIF4A1A0A087X0R7 540 aa21■□□□□ 0.95
VAMP1-205ENST00000535927 CDCA7LQ96GN5 454 aa21■□□□□ 0.95
VAMP1-205ENST00000535927 EIF4A1P60842 406 aaKnown RBP20.99■□□□□ 0.95
VAMP1-205ENST00000535927 ACSBG1Q96GR2 724 aa20.99■□□□□ 0.95
VAMP1-205ENST00000535927 SPINK5Q9NQ38 1064 aaPredicted RBP20.99■□□□□ 0.95
VAMP1-205ENST00000535927 HEG1Q9ULI3 1381 aa20.98■□□□□ 0.95
VAMP1-205ENST00000535927 ATG3Q9NT62 314 aa20.98■□□□□ 0.95
VAMP1-205ENST00000535927 LRP5O75197 1615 aa20.97■□□□□ 0.95
VAMP1-205ENST00000535927 PAPPAQ13219 1627 aa20.97■□□□□ 0.95
VAMP1-205ENST00000535927 KCNQ2O43526 872 aa20.97■□□□□ 0.95
VAMP1-205ENST00000535927 PLSCR1O15162 318 aa20.96■□□□□ 0.95
VAMP1-205ENST00000535927 SNRPA1P09661 255 aaKnown RBP20.96■□□□□ 0.95
VAMP1-205ENST00000535927 MIS18AQ9NYP9 233 aa20.96■□□□□ 0.95
VAMP1-205ENST00000535927 ZNF831Q5JPB2 1677 aa20.96■□□□□ 0.95
VAMP1-205ENST00000535927 UBR2Q8IWV8 1755 aa20.95■□□□□ 0.94
VAMP1-205ENST00000535927 CENPBP07199 599 aaPredicted RBP20.95■□□□□ 0.94
VAMP1-205ENST00000535927 FAM182BQ5T319 152 aa20.95■□□□□ 0.94
VAMP1-205ENST00000535927 TSR2Q969E8 191 aaKnown RBP20.95■□□□□ 0.94
VAMP1-205ENST00000535927 ASAP1Q9ULH1 1129 aa20.95■□□□□ 0.94
VAMP1-205ENST00000535927 BTAF1O14981 1849 aa20.94■□□□□ 0.94
VAMP1-205ENST00000535927 BAG6P46379 1132 aa20.94■□□□□ 0.94
VAMP1-205ENST00000535927 CACNA1FO60840 1977 aa20.94■□□□□ 0.94
VAMP1-205ENST00000535927 GIGYF1O75420 1035 aaPredicted RBP20.93■□□□□ 0.94
VAMP1-205ENST00000535927 TRIM37O94972 964 aa20.93■□□□□ 0.94
VAMP1-205ENST00000535927 EXOSC9Q06265 439 aaKnown RBP20.93■□□□□ 0.94
VAMP1-205ENST00000535927 SLC39A6Q13433 755 aa20.93■□□□□ 0.94
VAMP1-205ENST00000535927 ZNF496Q96IT1 587 aaPredicted RBP20.93■□□□□ 0.94
VAMP1-205ENST00000535927 TWISTNBQ3B726 338 aaPredicted RBP20.92■□□□□ 0.94
VAMP1-205ENST00000535927 SLC27A3Q5K4L6 730 aa20.92■□□□□ 0.94
VAMP1-205ENST00000535927 PALLDQ8WX93 1383 aa20.92■□□□□ 0.94
VAMP1-205ENST00000535927 PSDA5PKW4 1024 aaPredicted RBP20.91■□□□□ 0.94
VAMP1-205ENST00000535927 VAMP4O75379 141 aa20.91■□□□□ 0.94
VAMP1-205ENST00000535927 CICQ96RK0 1608 aaPredicted RBP20.9■□□□□ 0.94
VAMP1-205ENST00000535927 KCPQ6ZWJ8 1503 aa20.9■□□□□ 0.94
VAMP1-205ENST00000535927 ERBB4Q15303 1308 aa20.9■□□□□ 0.94
VAMP1-205ENST00000535927 LOC102724428A0A0B4J2F2 783 aa20.9■□□□□ 0.94
VAMP1-205ENST00000535927 KCNQ3O43525 872 aa20.9■□□□□ 0.94
VAMP1-205ENST00000535927 STARD3NLO95772 234 aa20.9■□□□□ 0.94
VAMP1-205ENST00000535927 SIK1P57059 783 aa20.9■□□□□ 0.94
VAMP1-205ENST00000535927 ALDH1L2Q3SY69 923 aa20.9■□□□□ 0.94
VAMP1-205ENST00000535927 CCDC30Q5VVM6 783 aa20.89■□□□□ 0.93
VAMP1-205ENST00000535927 C8orf58Q8NAV2 365 aa20.89■□□□□ 0.93
VAMP1-205ENST00000535927 RGPD3A6NKT7 1758 aaPredicted RBP20.89■□□□□ 0.93
VAMP1-205ENST00000535927 RGPD4Q7Z3J3 1758 aa20.89■□□□□ 0.93
VAMP1-205ENST00000535927 PTCD1O75127 700 aaKnown RBP20.88■□□□□ 0.93
VAMP1-205ENST00000535927 RBM42Q9BTD8 480 aaKnown RBP20.88■□□□□ 0.93
VAMP1-205ENST00000535927 LY75O60449 1722 aa20.87■□□□□ 0.93
VAMP1-205ENST00000535927 APBA3O96018 575 aa20.87■□□□□ 0.93
VAMP1-205ENST00000535927 BRPF1P55201 1214 aaPredicted RBP20.87■□□□□ 0.93
VAMP1-205ENST00000535927 ATP6V1AP38606 617 aa20.86■□□□□ 0.93
VAMP1-205ENST00000535927 TSPYL6Q8N831 410 aa20.85■□□□□ 0.93
VAMP1-205ENST00000535927 STK31Q9BXU1 1019 aa20.85■□□□□ 0.93
VAMP1-205ENST00000535927 RC3H1Q5TC82 1133 aaKnown RBP20.84■□□□□ 0.93
VAMP1-205ENST00000535927 DBF4Q9UBU7 674 aaPredicted RBP20.84■□□□□ 0.93
VAMP1-205ENST00000535927 HDGFL1Q5TGJ6 251 aa20.83■□□□□ 0.93
VAMP1-205ENST00000535927 PTF1AQ7RTS3 328 aa20.83■□□□□ 0.93
VAMP1-205ENST00000535927 CCNL1Q9UK58 526 aaPredicted RBP20.83■□□□□ 0.93
VAMP1-205ENST00000535927 RCAN3Q9UKA8 241 aa20.83■□□□□ 0.93
VAMP1-205ENST00000535927 TNS1Q9HBL0 1735 aaKnown RBP20.83■□□□□ 0.92
VAMP1-205ENST00000535927 LAMB4A4D0S4 1761 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms