RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 CGNL1Q0VF96 1302 aa11.87□□□□□ -0.51
CLIP1-206ENST00000535290 KIAA1551Q9HCM1 1747 aa11.87□□□□□ -0.51
CLIP1-206ENST00000535290 HDGFL2Q7Z4V5 671 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-206ENST00000535290 DCAF5Q96JK2 942 aa11.87□□□□□ -0.51
CLIP1-206ENST00000535290 UBR3Q6ZT12 1888 aa11.87□□□□□ -0.51
CLIP1-206ENST00000535290 TATP17735 454 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-206ENST00000535290 TMF1P82094 1093 aa11.86□□□□□ -0.51
CLIP1-206ENST00000535290 N4BP2Q86UW6 1770 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-206ENST00000535290 EDC4Q6P2E9 1401 aaKnown RBP11.86□□□□□ -0.51
CLIP1-206ENST00000535290 PCDH11XQ9BZA7 1347 aa11.86□□□□□ -0.51
CLIP1-206ENST00000535290 PCDH11YQ9BZA8 1340 aa11.86□□□□□ -0.51
CLIP1-206ENST00000535290 FAM161AQ3B820 660 aa11.85□□□□□ -0.51
CLIP1-206ENST00000535290 NLGN1Q8N2Q7 840 aa11.85□□□□□ -0.51
CLIP1-206ENST00000535290 CCDC87Q9NVE4 849 aa11.85□□□□□ -0.51
CLIP1-206ENST00000535290 PIM2Q9P1W9 311 aa11.85□□□□□ -0.51
CLIP1-206ENST00000535290 ZBTB22O15209 634 aa11.84□□□□□ -0.51
CLIP1-206ENST00000535290 FOXN1O15353 648 aa11.84□□□□□ -0.51
CLIP1-206ENST00000535290 DALRD3Q5D0E6 543 aaKnown RBP11.84□□□□□ -0.51
CLIP1-206ENST00000535290 L3MBTL2Q969R5 705 aa11.84□□□□□ -0.51
CLIP1-206ENST00000535290 ASAP1Q9ULH1 1129 aa11.84□□□□□ -0.51
CLIP1-206ENST00000535290 A0A1W2PP64 1363 aa11.83□□□□□ -0.52
CLIP1-206ENST00000535290 VEGFAP15692 232 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-206ENST00000535290 ATP6V1AP38606 617 aa11.83□□□□□ -0.52
CLIP1-206ENST00000535290 RRS1Q15050 365 aaKnown RBP11.83□□□□□ -0.52
CLIP1-206ENST00000535290 TRAPPC3LQ5T215 181 aa11.83□□□□□ -0.52
CLIP1-206ENST00000535290 COG3Q96JB2 828 aa11.83□□□□□ -0.52
CLIP1-206ENST00000535290 MKRN1Q9UHC7 482 aaKnown RBP11.83□□□□□ -0.52
CLIP1-206ENST00000535290 KIF13BQ9NQT8 1826 aa11.83□□□□□ -0.52
CLIP1-206ENST00000535290 RGPD2P0DJD1 1756 aa11.82□□□□□ -0.52
CLIP1-206ENST00000535290 GYS1P13807 737 aa11.82□□□□□ -0.52
CLIP1-206ENST00000535290 ARHGEF1Q92888 912 aaKnown RBP11.82□□□□□ -0.52
CLIP1-206ENST00000535290 PRDM10Q9NQV6 1147 aa11.82□□□□□ -0.52
CLIP1-206ENST00000535290 TERF2IPQ9NYB0 399 aa11.82□□□□□ -0.52
CLIP1-206ENST00000535290 PARP3Q9Y6F1 533 aa11.82□□□□□ -0.52
CLIP1-206ENST00000535290 ROCK2O75116 1388 aaKnown RBP11.81□□□□□ -0.52
CLIP1-206ENST00000535290 GLTPD2A6NH11 291 aa11.81□□□□□ -0.52
CLIP1-206ENST00000535290 CHRNA5P30532 468 aa11.81□□□□□ -0.52
CLIP1-206ENST00000535290 RTCBQ9Y3I0 505 aaKnown RBP11.81□□□□□ -0.52
CLIP1-206ENST00000535290 POTECB2RU33 542 aa11.8□□□□□ -0.52
CLIP1-206ENST00000535290 RASSF7Q02833 373 aa11.8□□□□□ -0.52
CLIP1-206ENST00000535290 NKX1-1Q15270 411 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-206ENST00000535290 MAP2P11137 1827 aaKnown RBP11.79□□□□□ -0.52
CLIP1-206ENST00000535290 HSP90AB2PQ58FF8 381 aa11.79□□□□□ -0.52
CLIP1-206ENST00000535290 SLC4A9Q96Q91 983 aa11.79□□□□□ -0.52
CLIP1-206ENST00000535290 CREBZFQ9NS37 354 aa11.79□□□□□ -0.52
CLIP1-206ENST00000535290 ATG3Q9NT62 314 aa11.79□□□□□ -0.52
CLIP1-206ENST00000535290 TMOD3Q9NYL9 352 aa11.79□□□□□ -0.52
CLIP1-206ENST00000535290 PKD1L3Q7Z443 1732 aa11.79□□□□□ -0.52
CLIP1-206ENST00000535290 RTL1A6NKG5 1358 aa11.79□□□□□ -0.52
CLIP1-206ENST00000535290 TNRC6CQ9HCJ0 1690 aaKnown RBP11.78□□□□□ -0.52
CLIP1-206ENST00000535290 RFC4P35249 363 aa11.78□□□□□ -0.52
CLIP1-206ENST00000535290 CTCFP49711 727 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-206ENST00000535290 ABHD8Q96I13 439 aa11.78□□□□□ -0.52
CLIP1-206ENST00000535290 ZC3H4Q9UPT8 1303 aaKnown RBP11.78□□□□□ -0.52
CLIP1-206ENST00000535290 BRCA1P38398 1863 aaKnown RBP11.78□□□□□ -0.52
CLIP1-206ENST00000535290 LMNB1P20700 586 aa11.77□□□□□ -0.53
CLIP1-206ENST00000535290 LBX1P52954 281 aa11.77□□□□□ -0.53
CLIP1-206ENST00000535290 DDR1Q08345 913 aa11.77□□□□□ -0.53
CLIP1-206ENST00000535290 C4AP0C0L4 1744 aa11.77□□□□□ -0.53
CLIP1-206ENST00000535290 KDM6AO15550 1401 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-206ENST00000535290 FKBP8Q14318 412 aa11.76□□□□□ -0.53
CLIP1-206ENST00000535290 SRP68Q9UHB9 627 aaKnown RBP11.76□□□□□ -0.53
CLIP1-206ENST00000535290 ITGB4P16144 1822 aa11.76□□□□□ -0.53
CLIP1-206ENST00000535290 ARFGEF1Q9Y6D6 1849 aa11.76□□□□□ -0.53
CLIP1-206ENST00000535290 SMG6Q86US8 1419 aaKnown RBP11.76□□□□□ -0.53
CLIP1-206ENST00000535290 RPS6KA4O75676 772 aa11.75□□□□□ -0.53
CLIP1-206ENST00000535290 MLLT1Q03111 559 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-206ENST00000535290 RC3H1Q5TC82 1133 aaKnown RBP11.75□□□□□ -0.53
CLIP1-206ENST00000535290 AIDAQ96BJ3 306 aa11.75□□□□□ -0.53
CLIP1-206ENST00000535290 INSRP06213 1382 aa11.75□□□□□ -0.53
CLIP1-206ENST00000535290 KDRP35968 1356 aa11.75□□□□□ -0.53
CLIP1-206ENST00000535290 CNTNAP1P78357 1384 aa11.75□□□□□ -0.53
CLIP1-206ENST00000535290 POTEIP0CG38 1075 aa11.74□□□□□ -0.53
CLIP1-206ENST00000535290 POTEJP0CG39 1038 aa11.74□□□□□ -0.53
CLIP1-206ENST00000535290 GGNBP2Q9H3C7 697 aa11.74□□□□□ -0.53
CLIP1-206ENST00000535290 WBP1LQ9NX94 342 aa11.74□□□□□ -0.53
CLIP1-206ENST00000535290 SBF1O95248 1867 aa11.74□□□□□ -0.53
CLIP1-206ENST00000535290 FYB1O15117 783 aa11.73□□□□□ -0.53
CLIP1-206ENST00000535290 VEGFBP49765 207 aa11.73□□□□□ -0.53
CLIP1-206ENST00000535290 CHADLQ6NUI6 762 aa11.73□□□□□ -0.53
CLIP1-206ENST00000535290 RBM42Q9BTD8 480 aaKnown RBP11.73□□□□□ -0.53
CLIP1-206ENST00000535290 CNTNAP4Q9C0A0 1308 aa11.73□□□□□ -0.53
CLIP1-206ENST00000535290 SPG7Q9UQ90 795 aa11.73□□□□□ -0.53
CLIP1-206ENST00000535290 RGS19P49795 217 aa11.72□□□□□ -0.53
CLIP1-206ENST00000535290 PUS7Q96PZ0 661 aaKnown RBP11.72□□□□□ -0.53
CLIP1-206ENST00000535290 CCDC85CA6NKD9 419 aa11.71□□□□□ -0.53
CLIP1-206ENST00000535290 NFKBIEO00221 500 aa11.71□□□□□ -0.53
CLIP1-206ENST00000535290 POLRMTO00411 1230 aaKnown RBP11.71□□□□□ -0.53
CLIP1-206ENST00000535290 HSPA8P11142 646 aaKnown RBP11.71□□□□□ -0.53
CLIP1-206ENST00000535290 PHKG2P15735 406 aa11.71□□□□□ -0.53
CLIP1-206ENST00000535290 DPY19L2Q6NUT2 758 aa11.71□□□□□ -0.53
CLIP1-206ENST00000535290 SIN3AQ96ST3 1273 aa11.71□□□□□ -0.53
CLIP1-206ENST00000535290 FLT4P35916 1363 aa11.7□□□□□ -0.54
CLIP1-206ENST00000535290 USP42Q9H9J4 1324 aaKnown RBP11.7□□□□□ -0.54
CLIP1-206ENST00000535290 TM4SF1P30408 202 aa11.7□□□□□ -0.54
CLIP1-206ENST00000535290 IFNL2Q8IZJ0 200 aa11.7□□□□□ -0.54
CLIP1-206ENST00000535290 CARD11Q9BXL7 1154 aa11.7□□□□□ -0.54
CLIP1-206ENST00000535290 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.7□□□□□ -0.54
CLIP1-206ENST00000535290 PASKQ96RG2 1323 aa11.69□□□□□ -0.54
CLIP1-206ENST00000535290 CRKLP46109 303 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms