RNA–Protein interactions for RNA: ENST00000534633.5

USF1-211, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 610 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-211ENST00000534633 KIF13BQ9NQT8 1826 aa17.21■□□□□ 0.35
USF1-211ENST00000534633 GIGYF1O75420 1035 aaPredicted RBP17.2■□□□□ 0.34
USF1-211ENST00000534633 ITPK1Q13572 414 aa17.2■□□□□ 0.34
USF1-211ENST00000534633 ATG3Q9NT62 314 aa17.2■□□□□ 0.34
USF1-211ENST00000534633 KDRP35968 1356 aa17.19■□□□□ 0.34
USF1-211ENST00000534633 ERVV-2B6SEH9 535 aa17.19■□□□□ 0.34
USF1-211ENST00000534633 GNPATO15228 680 aa17.19■□□□□ 0.34
USF1-211ENST00000534633 HSP90AB1P08238 724 aaKnown RBP17.19■□□□□ 0.34
USF1-211ENST00000534633 SMIM5Q71RC9 77 aa17.19■□□□□ 0.34
USF1-211ENST00000534633 SENP3-EIF4A1A0A087X0R7 540 aa17.18■□□□□ 0.34
USF1-211ENST00000534633 DCAF5Q96JK2 942 aa17.18■□□□□ 0.34
USF1-211ENST00000534633 PLEKHO1Q53GL0 409 aaPredicted RBP17.17■□□□□ 0.34
USF1-211ENST00000534633 SCN11AQ9UI33 1791 aa17.17■□□□□ 0.34
USF1-211ENST00000534633 MYH14Q7Z406 1995 aaKnown RBP17.17■□□□□ 0.34
USF1-211ENST00000534633 VIRMAQ69YN4 1812 aaKnown RBP17.17■□□□□ 0.34
USF1-211ENST00000534633 C4AP0C0L4 1744 aa17.16■□□□□ 0.34
USF1-211ENST00000534633 KDM6AO15550 1401 aaPredicted RBP17.16■□□□□ 0.34
USF1-211ENST00000534633 AMOTQ4VCS5 1084 aa17.16■□□□□ 0.34
USF1-211ENST00000534633 KIAA1551Q9HCM1 1747 aa17.16■□□□□ 0.34
USF1-211ENST00000534633 MORC1Q86VD1 984 aa17.15■□□□□ 0.34
USF1-211ENST00000534633 CICQ96RK0 1608 aaPredicted RBP17.14■□□□□ 0.33
USF1-211ENST00000534633 ATP10DQ9P241 1426 aa17.14■□□□□ 0.33
USF1-211ENST00000534633 ZNF530Q6P9A1 599 aaPredicted RBP17.14■□□□□ 0.33
USF1-211ENST00000534633 RTCBQ9Y3I0 505 aaKnown RBP17.14■□□□□ 0.33
USF1-211ENST00000534633 N4BP2Q86UW6 1770 aaPredicted RBP17.14■□□□□ 0.33
USF1-211ENST00000534633 ADCY9O60503 1353 aa17.14■□□□□ 0.33
USF1-211ENST00000534633 RC3H1Q5TC82 1133 aaKnown RBP17.13■□□□□ 0.33
USF1-211ENST00000534633 SLC4A9Q96Q91 983 aa17.13■□□□□ 0.33
USF1-211ENST00000534633 RBM42Q9BTD8 480 aaKnown RBP17.13■□□□□ 0.33
USF1-211ENST00000534633 BRCA1P38398 1863 aaKnown RBP17.12■□□□□ 0.33
USF1-211ENST00000534633 ADRA2BP18089 450 aa17.12■□□□□ 0.33
USF1-211ENST00000534633 CABP4P57796 275 aa17.12■□□□□ 0.33
USF1-211ENST00000534633 TRAPPC3LQ5T215 181 aa17.12■□□□□ 0.33
USF1-211ENST00000534633 KNSTRNQ9Y448 316 aa17.12■□□□□ 0.33
USF1-211ENST00000534633 CNTNAP4Q9C0A0 1308 aa17.12■□□□□ 0.33
USF1-211ENST00000534633 TJP1Q07157 1748 aa17.12■□□□□ 0.33
USF1-211ENST00000534633 MMP10P09238 476 aa17.11■□□□□ 0.33
USF1-211ENST00000534633 C1orf141Q5JVX7 400 aa17.11■□□□□ 0.33
USF1-211ENST00000534633 AEBP1Q8IUX7 1158 aa17.11■□□□□ 0.33
USF1-211ENST00000534633 NLGN1Q8N2Q7 840 aa17.11■□□□□ 0.33
USF1-211ENST00000534633 MTHFSP49914 203 aa17.1■□□□□ 0.33
USF1-211ENST00000534633 PXDNLA1KZ92 1463 aa17.1■□□□□ 0.33
USF1-211ENST00000534633 RPS6KA4O75676 772 aa17.09■□□□□ 0.33
USF1-211ENST00000534633 SULT6B1Q6IMI4 303 aa17.09■□□□□ 0.33
USF1-211ENST00000534633 ARHGEF1Q92888 912 aaKnown RBP17.09■□□□□ 0.33
USF1-211ENST00000534633 GPBP1L1Q9HC44 474 aaPredicted RBP17.09■□□□□ 0.33
USF1-211ENST00000534633 C10orf71Q711Q0 1435 aa17.08■□□□□ 0.32
USF1-211ENST00000534633 IL13P35225 146 aa17.08■□□□□ 0.32
USF1-211ENST00000534633 WWC3Q9ULE0 1092 aa17.08■□□□□ 0.32
USF1-211ENST00000534633 ARFGEF1Q9Y6D6 1849 aa17.07■□□□□ 0.32
USF1-211ENST00000534633 GYS1P13807 737 aa17.07■□□□□ 0.32
USF1-211ENST00000534633 RFC4P35249 363 aa17.07■□□□□ 0.32
USF1-211ENST00000534633 TGFB2P61812 414 aa17.07■□□□□ 0.32
USF1-211ENST00000534633 NFATC2IPQ8NCF5 419 aa17.07■□□□□ 0.32
USF1-211ENST00000534633 PTCD1O75127 700 aaKnown RBP17.06■□□□□ 0.32
USF1-211ENST00000534633 AMER1Q5JTC6 1135 aaPredicted RBP17.06■□□□□ 0.32
USF1-211ENST00000534633 CCDC87Q9NVE4 849 aa17.06■□□□□ 0.32
USF1-211ENST00000534633 ADAMTS7Q9UKP4 1686 aa17.05■□□□□ 0.32
USF1-211ENST00000534633 CEP350Q5VT06 3117 aa17.05■□□□□ 0.32
USF1-211ENST00000534633 CRKLP46109 303 aaKnown RBP17.04■□□□□ 0.32
USF1-211ENST00000534633 AKAP4Q5JQC9 854 aa17.04■□□□□ 0.32
USF1-211ENST00000534633 PARP3Q9Y6F1 533 aa17.04■□□□□ 0.32
USF1-211ENST00000534633 MRC1P22897 1456 aa17.04■□□□□ 0.32
USF1-211ENST00000534633 KIF7Q2M1P5 1343 aa17.03■□□□□ 0.32
USF1-211ENST00000534633 ZNF526Q8TF50 670 aaPredicted RBP17.03■□□□□ 0.32
USF1-211ENST00000534633 A0A0G2JLW4 131 aa17.02■□□□□ 0.32
USF1-211ENST00000534633 USP42Q9H9J4 1324 aaKnown RBP17.01■□□□□ 0.31
USF1-211ENST00000534633 ZEB1P37275 1124 aaPredicted RBP17.01■□□□□ 0.31
USF1-211ENST00000534633 BCS1LQ9Y276 419 aa17.01■□□□□ 0.31
USF1-211ENST00000534633 UBR2Q8IWV8 1755 aa17.01■□□□□ 0.31
USF1-211ENST00000534633 DPEP1P16444 411 aa17■□□□□ 0.31
USF1-211ENST00000534633 SLC52A2Q9HAB3 445 aa17■□□□□ 0.31
USF1-211ENST00000534633 AFDNP55196 1824 aaKnown RBP16.99■□□□□ 0.31
USF1-211ENST00000534633 PER1O15534 1290 aaPredicted RBP16.99■□□□□ 0.31
USF1-211ENST00000534633 KCPQ6ZWJ8 1503 aa16.98■□□□□ 0.31
USF1-211ENST00000534633 FCHSD2O94868 740 aa16.98■□□□□ 0.31
USF1-211ENST00000534633 FKBP8Q14318 412 aa16.98■□□□□ 0.31
USF1-211ENST00000534633 INTS5Q6P9B9 1019 aaKnown RBP16.98■□□□□ 0.31
USF1-211ENST00000534633 LGR6Q9HBX8 967 aa16.98■□□□□ 0.31
USF1-211ENST00000534633 SRP68Q9UHB9 627 aaKnown RBP16.98■□□□□ 0.31
USF1-211ENST00000534633 RNMTO43148 476 aaKnown RBP16.97■□□□□ 0.31
USF1-211ENST00000534633 DIAPH1O60610 1272 aaKnown RBP16.97■□□□□ 0.31
USF1-211ENST00000534633 HMOX1P09601 288 aa16.97■□□□□ 0.31
USF1-211ENST00000534633 HSPA6P17066 643 aa16.97■□□□□ 0.31
USF1-211ENST00000534633 SBF1O95248 1867 aa16.97■□□□□ 0.31
USF1-211ENST00000534633 NRXN2Q9P2S2 1712 aa16.96■□□□□ 0.31
USF1-211ENST00000534633 KIF3CO14782 793 aa16.96■□□□□ 0.31
USF1-211ENST00000534633 KCNA3P22001 575 aa16.96■□□□□ 0.31
USF1-211ENST00000534633 DDR1Q08345 913 aa16.96■□□□□ 0.31
USF1-211ENST00000534633 ARHGAP27Q6ZUM4 889 aa16.96■□□□□ 0.31
USF1-211ENST00000534633 DNAJC10Q8IXB1 793 aa16.96■□□□□ 0.31
USF1-211ENST00000534633 PIM2Q9P1W9 311 aa16.96■□□□□ 0.31
USF1-211ENST00000534633 SIPA1L3O60292 1781 aaPredicted RBP16.96■□□□□ 0.31
USF1-211ENST00000534633 SOS1Q07889 1333 aaPredicted RBP16.96■□□□□ 0.3
USF1-211ENST00000534633 DLEC1Q9Y238 1755 aa16.95■□□□□ 0.3
USF1-211ENST00000534633 MTHFSDQ2M296 383 aaKnown RBP16.95■□□□□ 0.3
USF1-211ENST00000534633 COL3A1P02461 1466 aaPredicted RBP16.94■□□□□ 0.3
USF1-211ENST00000534633 NPC1L1Q9UHC9 1359 aa16.94■□□□□ 0.3
USF1-211ENST00000534633 ZPR1O75312 459 aa16.94■□□□□ 0.3
USF1-211ENST00000534633 CYP19A1P11511 503 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms