RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 AFDNP55196 1824 aaKnown RBP6.87□□□□□ -1.31
USH1C-210ENST00000534556 LINC00116Q8NCU8 138 aa6.87□□□□□ -1.31
USH1C-210ENST00000534556 STK32BQ9NY57 414 aa6.87□□□□□ -1.31
USH1C-210ENST00000534556 CCNL1Q9UK58 526 aaPredicted RBP6.87□□□□□ -1.31
USH1C-210ENST00000534556 CHD4Q14839 1912 aa6.87□□□□□ -1.31
USH1C-210ENST00000534556 KIF13BQ9NQT8 1826 aa6.87□□□□□ -1.31
USH1C-210ENST00000534556 KDM3BQ7LBC6 1761 aa6.87□□□□□ -1.31
USH1C-210ENST00000534556 PLEKHO1Q53GL0 409 aaPredicted RBP6.86□□□□□ -1.31
USH1C-210ENST00000534556 SLC27A3Q5K4L6 730 aa6.86□□□□□ -1.31
USH1C-210ENST00000534556 COL23A1Q86Y22 540 aaPredicted RBP6.86□□□□□ -1.31
USH1C-210ENST00000534556 NFATC2IPQ8NCF5 419 aa6.86□□□□□ -1.31
USH1C-210ENST00000534556 RSPH6AQ9H0K4 717 aa6.86□□□□□ -1.31
USH1C-210ENST00000534556 N4BP2Q86UW6 1770 aaPredicted RBP6.86□□□□□ -1.31
USH1C-210ENST00000534556 BRCA1P38398 1863 aaKnown RBP6.85□□□□□ -1.31
USH1C-210ENST00000534556 LOC102724428A0A0B4J2F2 783 aa6.85□□□□□ -1.31
USH1C-210ENST00000534556 ERVV-2B6SEH9 535 aa6.85□□□□□ -1.31
USH1C-210ENST00000534556 U2SURPO15042 1029 aaKnown RBP6.85□□□□□ -1.31
USH1C-210ENST00000534556 RNMTO43148 476 aaKnown RBP6.85□□□□□ -1.31
USH1C-210ENST00000534556 SIK1P57059 783 aa6.85□□□□□ -1.31
USH1C-210ENST00000534556 AMOTQ4VCS5 1084 aa6.85□□□□□ -1.31
USH1C-210ENST00000534556 IL17REQ8NFR9 667 aa6.85□□□□□ -1.31
USH1C-210ENST00000534556 DCAF5Q96JK2 942 aa6.85□□□□□ -1.31
USH1C-210ENST00000534556 TMOD3Q9NYL9 352 aa6.85□□□□□ -1.31
USH1C-210ENST00000534556 PRKAR2BP31323 418 aa6.84□□□□□ -1.31
USH1C-210ENST00000534556 SLC39A6Q13433 755 aa6.84□□□□□ -1.31
USH1C-210ENST00000534556 AKAP4Q5JQC9 854 aa6.84□□□□□ -1.31
USH1C-210ENST00000534556 SPON1Q9HCB6 807 aa6.84□□□□□ -1.31
USH1C-210ENST00000534556 LAMB4A4D0S4 1761 aa6.83□□□□□ -1.32
USH1C-210ENST00000534556 KCNQ3O43525 872 aa6.83□□□□□ -1.32
USH1C-210ENST00000534556 CABP4P57796 275 aa6.83□□□□□ -1.32
USH1C-210ENST00000534556 MSL1Q68DK7 614 aa6.83□□□□□ -1.32
USH1C-210ENST00000534556 SMARCC1Q92922 1105 aaPredicted RBP6.83□□□□□ -1.32
USH1C-210ENST00000534556 MTFR1LQ9H019 292 aa6.83□□□□□ -1.32
USH1C-210ENST00000534556 SLC52A2Q9HAB3 445 aa6.83□□□□□ -1.32
USH1C-210ENST00000534556 ANKRD31Q8N7Z5 1873 aa6.83□□□□□ -1.32
USH1C-210ENST00000534556 CEP350Q5VT06 3117 aa6.83□□□□□ -1.32
USH1C-210ENST00000534556 CEMIPQ8WUJ3 1361 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 BCORQ6W2J9 1755 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 CACNA1SQ13698 1873 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 PTCD1O75127 700 aaKnown RBP6.82□□□□□ -1.32
USH1C-210ENST00000534556 ATP6V1AP38606 617 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 DCTN1Q14203 1278 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 CCDC184Q52MB2 194 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 C1orf141Q5JVX7 400 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 PLEKHF1Q96S99 279 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 RBM42Q9BTD8 480 aaKnown RBP6.82□□□□□ -1.32
USH1C-210ENST00000534556 TFCP2L1Q9NZI6 479 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 NUP98P52948 1817 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 MAP3K5Q99683 1374 aa6.82□□□□□ -1.32
USH1C-210ENST00000534556 NRXN2Q9P2S2 1712 aa6.81□□□□□ -1.32
USH1C-210ENST00000534556 CCDC88AQ3V6T2 1871 aa6.81□□□□□ -1.32
USH1C-210ENST00000534556 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.81□□□□□ -1.32
USH1C-210ENST00000534556 HSP90AB1P08238 724 aaKnown RBP6.81□□□□□ -1.32
USH1C-210ENST00000534556 U2AF1L5P0DN76 240 aaPredicted RBP6.81□□□□□ -1.32
USH1C-210ENST00000534556 U2AF1Q01081 240 aaKnown RBP eCLIP6.81□□□□□ -1.32
USH1C-210ENST00000534556 INTS5Q6P9B9 1019 aaKnown RBP6.81□□□□□ -1.32
USH1C-210ENST00000534556 FHDC1Q9C0D6 1143 aaPredicted RBP6.81□□□□□ -1.32
USH1C-210ENST00000534556 SCN7AQ01118 1682 aa6.81□□□□□ -1.32
USH1C-210ENST00000534556 PRAMEF22A3QJZ6 481 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 GNAT3A8MTJ3 354 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 GNPATO15228 680 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 FCHSD2O94868 740 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 PHF14O94880 888 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 CRKLP46109 303 aaKnown RBP6.8□□□□□ -1.32
USH1C-210ENST00000534556 MCM10Q7L590 875 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 DNAJC10Q8IXB1 793 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 NLGN2Q8NFZ4 835 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 SLC16A10Q8TF71 515 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 SYT17Q9BSW7 474 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 DLEC1Q9Y238 1755 aa6.8□□□□□ -1.32
USH1C-210ENST00000534556 CNTNAP4Q9C0A0 1308 aa6.79□□□□□ -1.32
USH1C-210ENST00000534556 SBF1O95248 1867 aa6.79□□□□□ -1.32
USH1C-210ENST00000534556 ARFGEF1Q9Y6D6 1849 aa6.79□□□□□ -1.32
USH1C-210ENST00000534556 CYP19A1P11511 503 aaPredicted RBP6.79□□□□□ -1.32
USH1C-210ENST00000534556 RC3H1Q5TC82 1133 aaKnown RBP6.79□□□□□ -1.32
USH1C-210ENST00000534556 ARHGEF1Q92888 912 aaKnown RBP6.79□□□□□ -1.32
USH1C-210ENST00000534556 ZNF496Q96IT1 587 aaPredicted RBP6.79□□□□□ -1.32
USH1C-210ENST00000534556 CFAP53Q96M91 514 aa6.79□□□□□ -1.32
USH1C-210ENST00000534556 ARXQ96QS3 562 aa6.79□□□□□ -1.32
USH1C-210ENST00000534556 THUMPD2Q9BTF0 503 aaKnown RBP6.79□□□□□ -1.32
USH1C-210ENST00000534556 PRKRIP1Q9H875 184 aaPredicted RBP6.79□□□□□ -1.32
USH1C-210ENST00000534556 SRP68Q9UHB9 627 aaKnown RBP6.79□□□□□ -1.32
USH1C-210ENST00000534556 COL11A2P13942 1736 aaPredicted RBP6.79□□□□□ -1.32
USH1C-210ENST00000534556 MSH5O43196 834 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 RPS6KA4O75676 772 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 SSFA2P28290 1259 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 RALBP1Q15311 655 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 GAS2L2Q8NHY3 880 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 AK7Q96M32 723 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 BCL2L12Q9HB09 334 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 MIS18AQ9NYP9 233 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 PPP1R1BQ9UD71 204 aaPredicted RBP6.78□□□□□ -1.32
USH1C-210ENST00000534556 ZBTB1Q9Y2K1 713 aa6.78□□□□□ -1.32
USH1C-210ENST00000534556 MYBBP1AQ9BQG0 1328 aaKnown RBP6.77□□□□□ -1.32
USH1C-210ENST00000534556 GYS1P13807 737 aa6.77□□□□□ -1.33
USH1C-210ENST00000534556 PIP4K2AP48426 406 aaPredicted RBP6.77□□□□□ -1.33
USH1C-210ENST00000534556 ZNF790Q6PG37 636 aa6.77□□□□□ -1.33
USH1C-210ENST00000534556 CCDC146Q8IYE0 955 aa6.77□□□□□ -1.33
USH1C-210ENST00000534556 NUDCQ9Y266 331 aa6.77□□□□□ -1.33
USH1C-210ENST00000534556 USP16Q9Y5T5 823 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms