RNA–Protein interactions for RNA: ENST00000534373.5

CAPN1-228, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-228ENST00000534373 C4BP0C0L5 1744 aa18.13■□□□□ 0.49
CAPN1-228ENST00000534373 DIAPH1O60610 1272 aaKnown RBP18.13■□□□□ 0.49
CAPN1-228ENST00000534373 AKAP4Q5JQC9 854 aa18.12■□□□□ 0.49
CAPN1-228ENST00000534373 LINC00116Q8NCU8 138 aa18.12■□□□□ 0.49
CAPN1-228ENST00000534373 UTRNP46939 3433 aa18.12■□□□□ 0.49
CAPN1-228ENST00000534373 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.11■□□□□ 0.49
CAPN1-228ENST00000534373 ITPK1Q13572 414 aa18.11■□□□□ 0.49
CAPN1-228ENST00000534373 KDM6AO15550 1401 aaPredicted RBP18.11■□□□□ 0.49
CAPN1-228ENST00000534373 RC3H1Q5TC82 1133 aaKnown RBP18.1■□□□□ 0.49
CAPN1-228ENST00000534373 NFATC2IPQ8NCF5 419 aa18.09■□□□□ 0.49
CAPN1-228ENST00000534373 RBM42Q9BTD8 480 aaKnown RBP18.09■□□□□ 0.49
CAPN1-228ENST00000534373 ZNF831Q5JPB2 1677 aa18.09■□□□□ 0.49
CAPN1-228ENST00000534373 GNPATO15228 680 aa18.08■□□□□ 0.48
CAPN1-228ENST00000534373 MSL1Q68DK7 614 aa18.08■□□□□ 0.48
CAPN1-228ENST00000534373 KLHL34Q8N239 644 aa18.08■□□□□ 0.48
CAPN1-228ENST00000534373 CD2APQ9Y5K6 639 aa18.08■□□□□ 0.48
CAPN1-228ENST00000534373 PHF14O94880 888 aa18.07■□□□□ 0.48
CAPN1-228ENST00000534373 HMOX1P09601 288 aa18.07■□□□□ 0.48
CAPN1-228ENST00000534373 GPR162Q16538 588 aa18.07■□□□□ 0.48
CAPN1-228ENST00000534373 AMIGO3Q86WK7 504 aa18.07■□□□□ 0.48
CAPN1-228ENST00000534373 SLC4A9Q96Q91 983 aa18.07■□□□□ 0.48
CAPN1-228ENST00000534373 UBR3Q6ZT12 1888 aa18.07■□□□□ 0.48
CAPN1-228ENST00000534373 ADRA2BP18089 450 aa18.06■□□□□ 0.48
CAPN1-228ENST00000534373 RTCBQ9Y3I0 505 aaKnown RBP18.06■□□□□ 0.48
CAPN1-228ENST00000534373 CNTNAP4Q9C0A0 1308 aa18.05■□□□□ 0.48
CAPN1-228ENST00000534373 TRAPPC3LQ5T215 181 aa18.05■□□□□ 0.48
CAPN1-228ENST00000534373 NLGN2Q8NFZ4 835 aa18.04■□□□□ 0.48
CAPN1-228ENST00000534373 SLC52A2Q9HAB3 445 aa18.04■□□□□ 0.48
CAPN1-228ENST00000534373 RNMTO43148 476 aaKnown RBP18.03■□□□□ 0.48
CAPN1-228ENST00000534373 RPS6KA4O75676 772 aa18.03■□□□□ 0.48
CAPN1-228ENST00000534373 MTHFSDQ2M296 383 aaKnown RBP18.03■□□□□ 0.48
CAPN1-228ENST00000534373 CFAP53Q96M91 514 aa18.03■□□□□ 0.48
CAPN1-228ENST00000534373 LGR6Q9HBX8 967 aa18.03■□□□□ 0.48
CAPN1-228ENST00000534373 GRIN3BO60391 1043 aa18.02■□□□□ 0.48
CAPN1-228ENST00000534373 PTCD1O75127 700 aaKnown RBP18.02■□□□□ 0.48
CAPN1-228ENST00000534373 SMIM5Q71RC9 77 aa18.02■□□□□ 0.48
CAPN1-228ENST00000534373 NLGN1Q8N2Q7 840 aa18.02■□□□□ 0.48
CAPN1-228ENST00000534373 SCN11AQ9UI33 1791 aa18.02■□□□□ 0.47
CAPN1-228ENST00000534373 COL3A1P02461 1466 aaPredicted RBP18.01■□□□□ 0.47
CAPN1-228ENST00000534373 U2SURPO15042 1029 aaKnown RBP18.01■□□□□ 0.47
CAPN1-228ENST00000534373 CNGB1Q14028 1251 aaPredicted RBP18.01■□□□□ 0.47
CAPN1-228ENST00000534373 ARHGEF1Q92888 912 aaKnown RBP18■□□□□ 0.47
CAPN1-228ENST00000534373 NUDCQ9Y266 331 aa18■□□□□ 0.47
CAPN1-228ENST00000534373 GOLGB1Q14789 3259 aaKnown RBP17.99■□□□□ 0.47
CAPN1-228ENST00000534373 RFC4P35249 363 aa17.99■□□□□ 0.47
CAPN1-228ENST00000534373 GAS2L2Q8NHY3 880 aa17.99■□□□□ 0.47
CAPN1-228ENST00000534373 CHD4Q14839 1912 aa17.99■□□□□ 0.47
CAPN1-228ENST00000534373 COL5A3P25940 1745 aaPredicted RBP17.98■□□□□ 0.47
CAPN1-228ENST00000534373 CRKLP46109 303 aaKnown RBP17.98■□□□□ 0.47
CAPN1-228ENST00000534373 PELP1Q8IZL8 1130 aaKnown RBP17.98■□□□□ 0.47
CAPN1-228ENST00000534373 MRC1P22897 1456 aa17.98■□□□□ 0.47
CAPN1-228ENST00000534373 PPP2R1AP30153 589 aa17.97■□□□□ 0.47
CAPN1-228ENST00000534373 VSIG10Q8N0Z9 540 aa17.97■□□□□ 0.47
CAPN1-228ENST00000534373 GNAT3A8MTJ3 354 aa17.96■□□□□ 0.47
CAPN1-228ENST00000534373 MMP10P09238 476 aa17.96■□□□□ 0.47
CAPN1-228ENST00000534373 ZNF784Q8NCA9 323 aaPredicted RBP17.96■□□□□ 0.47
CAPN1-228ENST00000534373 CICQ96RK0 1608 aaPredicted RBP17.96■□□□□ 0.47
CAPN1-228ENST00000534373 ADAMTS7Q9UKP4 1686 aa17.96■□□□□ 0.47
CAPN1-228ENST00000534373 GYS1P13807 737 aa17.95■□□□□ 0.46
CAPN1-228ENST00000534373 YBX3P16989 372 aaKnown RBP eCLIP17.95■□□□□ 0.463e-6■□□□□ 8.1
CAPN1-228ENST00000534373 MYH14Q7Z406 1995 aaKnown RBP17.94■□□□□ 0.46
CAPN1-228ENST00000534373 SLC39A6Q13433 755 aa17.94■□□□□ 0.46
CAPN1-228ENST00000534373 INTS5Q6P9B9 1019 aaKnown RBP17.94■□□□□ 0.46
CAPN1-228ENST00000534373 FCHSD2O94868 740 aa17.93■□□□□ 0.46
CAPN1-228ENST00000534373 TGFB2P61812 414 aa17.93■□□□□ 0.46
CAPN1-228ENST00000534373 TEFQ10587 303 aa17.93■□□□□ 0.46
CAPN1-228ENST00000534373 DNAJC10Q8IXB1 793 aa17.93■□□□□ 0.46
CAPN1-228ENST00000534373 IL17REQ8NFR9 667 aa17.93■□□□□ 0.46
CAPN1-228ENST00000534373 RSPH6AQ9H0K4 717 aa17.93■□□□□ 0.46
CAPN1-228ENST00000534373 CCDC87Q9NVE4 849 aa17.93■□□□□ 0.46
CAPN1-228ENST00000534373 CYP19A1P11511 503 aaPredicted RBP17.92■□□□□ 0.46
CAPN1-228ENST00000534373 PRKAR2BP31323 418 aa17.92■□□□□ 0.46
CAPN1-228ENST00000534373 TTC5Q8N0Z6 440 aa17.92■□□□□ 0.46
CAPN1-228ENST00000534373 U2AF1L5P0DN76 240 aaPredicted RBP17.91■□□□□ 0.46
CAPN1-228ENST00000534373 U2AF1Q01081 240 aaKnown RBP eCLIP17.91■□□□□ 0.46
CAPN1-228ENST00000534373 PHACTR3Q96KR7 559 aa17.91■□□□□ 0.46
CAPN1-228ENST00000534373 PARP3Q9Y6F1 533 aa17.91■□□□□ 0.46
CAPN1-228ENST00000534373 TJP1Q07157 1748 aa17.91■□□□□ 0.46
CAPN1-228ENST00000534373 USP42Q9H9J4 1324 aaKnown RBP17.91■□□□□ 0.46
CAPN1-228ENST00000534373 ZNF790Q6PG37 636 aa17.9■□□□□ 0.46
CAPN1-228ENST00000534373 TEX13AQ9BXU3 409 aaPredicted RBP17.9■□□□□ 0.46
CAPN1-228ENST00000534373 CEMIPQ8WUJ3 1361 aa17.9■□□□□ 0.46
CAPN1-228ENST00000534373 VIRMAQ69YN4 1812 aaKnown RBP17.89■□□□□ 0.45
CAPN1-228ENST00000534373 KCPQ6ZWJ8 1503 aa17.89■□□□□ 0.45
CAPN1-228ENST00000534373 STARD3NLO95772 234 aa17.89■□□□□ 0.45
CAPN1-228ENST00000534373 SOS1Q07889 1333 aaPredicted RBP17.89■□□□□ 0.45
CAPN1-228ENST00000534373 ZPR1O75312 459 aa17.88■□□□□ 0.45
CAPN1-228ENST00000534373 HTATSF1O43719 755 aaKnown RBP17.87■□□□□ 0.45
CAPN1-228ENST00000534373 FKBP8Q14318 412 aa17.87■□□□□ 0.45
CAPN1-228ENST00000534373 SRP68Q9UHB9 627 aaKnown RBP17.87■□□□□ 0.45
CAPN1-228ENST00000534373 TM4SF1P30408 202 aa17.86■□□□□ 0.45
CAPN1-228ENST00000534373 RTF1Q92541 710 aaKnown RBP17.86■□□□□ 0.45
CAPN1-228ENST00000534373 ZNF496Q96IT1 587 aaPredicted RBP17.86■□□□□ 0.45
CAPN1-228ENST00000534373 NARFQ9UHQ1 456 aa17.86■□□□□ 0.45
CAPN1-228ENST00000534373 C10orf71Q711Q0 1435 aa17.86■□□□□ 0.45
CAPN1-228ENST00000534373 C4AP0C0L4 1744 aa17.86■□□□□ 0.45
CAPN1-228ENST00000534373 KIF13BQ9NQT8 1826 aa17.86■□□□□ 0.45
CAPN1-228ENST00000534373 FMNL2Q96PY5 1086 aa17.85■□□□□ 0.45
CAPN1-228ENST00000534373 HEG1Q9ULI3 1381 aa17.85■□□□□ 0.45
CAPN1-228ENST00000534373 ZBTB1Q9Y2K1 713 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms