RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 NLGN2Q8NFZ4 835 aa13.09□□□□□ -0.31
SSBP3-215ENST00000533946 SCN11AQ9UI33 1791 aa13.09□□□□□ -0.31
SSBP3-215ENST00000533946 DIAPH1O60610 1272 aaKnown RBP13.08□□□□□ -0.32
SSBP3-215ENST00000533946 PPP2R1AP30153 589 aa13.08□□□□□ -0.32
SSBP3-215ENST00000533946 PHACTR3Q96KR7 559 aa13.08□□□□□ -0.32
SSBP3-215ENST00000533946 ARXQ96QS3 562 aa13.08□□□□□ -0.32
SSBP3-215ENST00000533946 NPC1L1Q9UHC9 1359 aa13.07□□□□□ -0.32
SSBP3-215ENST00000533946 U2SURPO15042 1029 aaKnown RBP13.07□□□□□ -0.32
SSBP3-215ENST00000533946 PTCD1O75127 700 aaKnown RBP13.07□□□□□ -0.32
SSBP3-215ENST00000533946 ATP6V1AP38606 617 aa13.07□□□□□ -0.32
SSBP3-215ENST00000533946 SLC39A6Q13433 755 aa13.07□□□□□ -0.32
SSBP3-215ENST00000533946 KLHL34Q8N239 644 aa13.07□□□□□ -0.32
SSBP3-215ENST00000533946 RBM42Q9BTD8 480 aaKnown RBP13.07□□□□□ -0.32
SSBP3-215ENST00000533946 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.06□□□□□ -0.32
SSBP3-215ENST00000533946 ERVV-2B6SEH9 535 aa13.06□□□□□ -0.32
SSBP3-215ENST00000533946 CABP4P57796 275 aa13.06□□□□□ -0.32
SSBP3-215ENST00000533946 DCAF5Q96JK2 942 aa13.06□□□□□ -0.32
SSBP3-215ENST00000533946 COL5A3P25940 1745 aaPredicted RBP13.05□□□□□ -0.32
SSBP3-215ENST00000533946 TJP1Q07157 1748 aa13.05□□□□□ -0.32
SSBP3-215ENST00000533946 SMARCC1Q92922 1105 aaPredicted RBP13.05□□□□□ -0.32
SSBP3-215ENST00000533946 WWC3Q9ULE0 1092 aa13.05□□□□□ -0.32
SSBP3-215ENST00000533946 GNPATO15228 680 aa13.04□□□□□ -0.32
SSBP3-215ENST00000533946 RNMTO43148 476 aaKnown RBP13.04□□□□□ -0.32
SSBP3-215ENST00000533946 AMOTQ4VCS5 1084 aa13.04□□□□□ -0.32
SSBP3-215ENST00000533946 ADAMTS7Q9UKP4 1686 aa13.03□□□□□ -0.32
SSBP3-215ENST00000533946 KCNQ3O43525 872 aa13.03□□□□□ -0.32
SSBP3-215ENST00000533946 C1orf141Q5JVX7 400 aa13.03□□□□□ -0.32
SSBP3-215ENST00000533946 IL17REQ8NFR9 667 aa13.03□□□□□ -0.32
SSBP3-215ENST00000533946 AK7Q96M32 723 aa13.03□□□□□ -0.32
SSBP3-215ENST00000533946 AKAP4Q5JQC9 854 aa13.02□□□□□ -0.33
SSBP3-215ENST00000533946 RSPH6AQ9H0K4 717 aa13.02□□□□□ -0.33
SSBP3-215ENST00000533946 PRKAR2BP31323 418 aa13.01□□□□□ -0.33
SSBP3-215ENST00000533946 DDX10Q13206 875 aaKnown RBP13.01□□□□□ -0.33
SSBP3-215ENST00000533946 DNAJC10Q8IXB1 793 aa13.01□□□□□ -0.33
SSBP3-215ENST00000533946 SLC16A10Q8TF71 515 aa13.01□□□□□ -0.33
SSBP3-215ENST00000533946 SLC52A2Q9HAB3 445 aa13.01□□□□□ -0.33
SSBP3-215ENST00000533946 SRP68Q9UHB9 627 aaKnown RBP13.01□□□□□ -0.33
SSBP3-215ENST00000533946 KCPQ6ZWJ8 1503 aa13.01□□□□□ -0.33
SSBP3-215ENST00000533946 YBX3P16989 372 aaKnown RBP eCLIP13□□□□□ -0.33
SSBP3-215ENST00000533946 DCTN1Q14203 1278 aa13□□□□□ -0.33
SSBP3-215ENST00000533946 INTS5Q6P9B9 1019 aaKnown RBP13□□□□□ -0.33
SSBP3-215ENST00000533946 SIPA1L3O60292 1781 aaPredicted RBP12.99□□□□□ -0.33
SSBP3-215ENST00000533946 C4AP0C0L4 1744 aa12.99□□□□□ -0.33
SSBP3-215ENST00000533946 MRC1P22897 1456 aa12.99□□□□□ -0.33
SSBP3-215ENST00000533946 HSP90AB1P08238 724 aaKnown RBP12.99□□□□□ -0.33
SSBP3-215ENST00000533946 ARHGEF1Q92888 912 aaKnown RBP12.99□□□□□ -0.33
SSBP3-215ENST00000533946 PLEKHG2Q9H7P9 1386 aa12.98□□□□□ -0.33
SSBP3-215ENST00000533946 CRKLP46109 303 aaKnown RBP12.98□□□□□ -0.33
SSBP3-215ENST00000533946 ZNF831Q5JPB2 1677 aa12.98□□□□□ -0.33
SSBP3-215ENST00000533946 PRAMEF22A3QJZ6 481 aa12.97□□□□□ -0.33
SSBP3-215ENST00000533946 U2AF1L5P0DN76 240 aaPredicted RBP12.97□□□□□ -0.33
SSBP3-215ENST00000533946 POLD1P28340 1107 aa12.97□□□□□ -0.33
SSBP3-215ENST00000533946 U2AF1Q01081 240 aaKnown RBP eCLIP12.97□□□□□ -0.33
SSBP3-215ENST00000533946 PELP1Q8IZL8 1130 aaKnown RBP12.97□□□□□ -0.33
SSBP3-215ENST00000533946 UBR2Q8IWV8 1755 aa12.97□□□□□ -0.33
SSBP3-215ENST00000533946 MAP3K5Q99683 1374 aa12.96□□□□□ -0.33
SSBP3-215ENST00000533946 YY1P25490 414 aa12.96□□□□□ -0.33
SSBP3-215ENST00000533946 SSFA2P28290 1259 aa12.96□□□□□ -0.33
SSBP3-215ENST00000533946 MCM10Q7L590 875 aa12.96□□□□□ -0.33
SSBP3-215ENST00000533946 KIAA1551Q9HCM1 1747 aa12.96□□□□□ -0.34
SSBP3-215ENST00000533946 CNTNAP4Q9C0A0 1308 aa12.95□□□□□ -0.34
SSBP3-215ENST00000533946 RPS6KA4O75676 772 aa12.95□□□□□ -0.34
SSBP3-215ENST00000533946 MMP10P09238 476 aa12.95□□□□□ -0.34
SSBP3-215ENST00000533946 CYP19A1P11511 503 aaPredicted RBP12.95□□□□□ -0.34
SSBP3-215ENST00000533946 GYS1P13807 737 aa12.95□□□□□ -0.34
SSBP3-215ENST00000533946 PIP4K2AP48426 406 aaPredicted RBP12.95□□□□□ -0.34
SSBP3-215ENST00000533946 FKBP8Q14318 412 aa12.95□□□□□ -0.34
SSBP3-215ENST00000533946 ZNF496Q96IT1 587 aaPredicted RBP12.95□□□□□ -0.34
SSBP3-215ENST00000533946 MIS18AQ9NYP9 233 aa12.95□□□□□ -0.34
SSBP3-215ENST00000533946 DLG5Q8TDM6 1919 aa12.95□□□□□ -0.34
SSBP3-215ENST00000533946 N4BP2Q86UW6 1770 aaPredicted RBP12.94□□□□□ -0.34
SSBP3-215ENST00000533946 GNAT3A8MTJ3 354 aa12.94□□□□□ -0.34
SSBP3-215ENST00000533946 TRAPPC3LQ5T215 181 aa12.94□□□□□ -0.34
SSBP3-215ENST00000533946 RC3H1Q5TC82 1133 aaKnown RBP12.94□□□□□ -0.34
SSBP3-215ENST00000533946 THUMPD2Q9BTF0 503 aaKnown RBP12.94□□□□□ -0.34
SSBP3-215ENST00000533946 ZBTB1Q9Y2K1 713 aa12.94□□□□□ -0.34
SSBP3-215ENST00000533946 RTCBQ9Y3I0 505 aaKnown RBP12.94□□□□□ -0.34
SSBP3-215ENST00000533946 CICQ96RK0 1608 aaPredicted RBP12.93□□□□□ -0.34
SSBP3-215ENST00000533946 DDR1Q08345 913 aa12.93□□□□□ -0.34
SSBP3-215ENST00000533946 GPR162Q16538 588 aa12.93□□□□□ -0.34
SSBP3-215ENST00000533946 FLAD1Q8NFF5 587 aa12.93□□□□□ -0.34
SSBP3-215ENST00000533946 CEMIPQ8WUJ3 1361 aa12.93□□□□□ -0.34
SSBP3-215ENST00000533946 CFAP53Q96M91 514 aa12.92□□□□□ -0.34
SSBP3-215ENST00000533946 PLEKHF1Q96S99 279 aa12.92□□□□□ -0.34
SSBP3-215ENST00000533946 BCL2L12Q9HB09 334 aa12.92□□□□□ -0.34
SSBP3-215ENST00000533946 SOS1Q07889 1333 aaPredicted RBP12.91□□□□□ -0.34
SSBP3-215ENST00000533946 A1BGP04217 495 aa12.91□□□□□ -0.34
SSBP3-215ENST00000533946 CCDC87Q9NVE4 849 aa12.91□□□□□ -0.34
SSBP3-215ENST00000533946 CHD4Q14839 1912 aa12.9□□□□□ -0.34
SSBP3-215ENST00000533946 A0A0G2JLW4 131 aa12.9□□□□□ -0.34
SSBP3-215ENST00000533946 CANXP27824 592 aaKnown RBP12.9□□□□□ -0.34
SSBP3-215ENST00000533946 RFC4P35249 363 aa12.9□□□□□ -0.34
SSBP3-215ENST00000533946 USPL1Q5W0Q7 1092 aa12.9□□□□□ -0.34
SSBP3-215ENST00000533946 ZNF790Q6PG37 636 aa12.9□□□□□ -0.34
SSBP3-215ENST00000533946 GAS2L2Q8NHY3 880 aa12.9□□□□□ -0.34
SSBP3-215ENST00000533946 USP42Q9H9J4 1324 aaKnown RBP12.89□□□□□ -0.35
SSBP3-215ENST00000533946 FCHSD2O94868 740 aa12.89□□□□□ -0.35
SSBP3-215ENST00000533946 CD2APQ9Y5K6 639 aa12.89□□□□□ -0.35
SSBP3-215ENST00000533946 USP16Q9Y5T5 823 aa12.89□□□□□ -0.35
SSBP3-215ENST00000533946 KIF13BQ9NQT8 1826 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms