RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 KDRP35968 1356 aa14.1□□□□□ -0.15
CAPN1-225ENST00000533704 NPC1L1Q9UHC9 1359 aa14.1□□□□□ -0.15
CAPN1-225ENST00000533704 ERVV-2B6SEH9 535 aa14.1□□□□□ -0.15
CAPN1-225ENST00000533704 HMGB2P26583 209 aaKnown RBP14.1□□□□□ -0.15
CAPN1-225ENST00000533704 ATP6V1AP38606 617 aa14.1□□□□□ -0.15
CAPN1-225ENST00000533704 SYT17Q9BSW7 474 aa14.1□□□□□ -0.15
CAPN1-225ENST00000533704 RBM42Q9BTD8 480 aaKnown RBP14.1□□□□□ -0.15
CAPN1-225ENST00000533704 ATG3Q9NT62 314 aa14.1□□□□□ -0.15
CAPN1-225ENST00000533704 U2SURPO15042 1029 aaKnown RBP14.09□□□□□ -0.15
CAPN1-225ENST00000533704 SMIM5Q71RC9 77 aa14.09□□□□□ -0.15
CAPN1-225ENST00000533704 LINC00116Q8NCU8 138 aa14.09□□□□□ -0.15
CAPN1-225ENST00000533704 ITPK1Q13572 414 aa14.08□□□□□ -0.16
CAPN1-225ENST00000533704 FLAD1Q8NFF5 587 aa14.08□□□□□ -0.16
CAPN1-225ENST00000533704 GNPATO15228 680 aa14.07□□□□□ -0.16
CAPN1-225ENST00000533704 COL3A1P02461 1466 aaPredicted RBP14.06□□□□□ -0.16
CAPN1-225ENST00000533704 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.06□□□□□ -0.16
CAPN1-225ENST00000533704 AKAP4Q5JQC9 854 aa14.06□□□□□ -0.16
CAPN1-225ENST00000533704 AMIGO3Q86WK7 504 aa14.06□□□□□ -0.16
CAPN1-225ENST00000533704 NFATC2IPQ8NCF5 419 aa14.06□□□□□ -0.16
CAPN1-225ENST00000533704 COL5A3P25940 1745 aaPredicted RBP14.06□□□□□ -0.16
CAPN1-225ENST00000533704 PTCD1O75127 700 aaKnown RBP14.05□□□□□ -0.16
CAPN1-225ENST00000533704 PELP1Q8IZL8 1130 aaKnown RBP14.05□□□□□ -0.16
CAPN1-225ENST00000533704 CFAP53Q96M91 514 aa14.05□□□□□ -0.16
CAPN1-225ENST00000533704 CHD4Q14839 1912 aa14.05□□□□□ -0.16
CAPN1-225ENST00000533704 MYH14Q7Z406 1995 aaKnown RBP14.05□□□□□ -0.16
CAPN1-225ENST00000533704 ZNF831Q5JPB2 1677 aa14.04□□□□□ -0.16
CAPN1-225ENST00000533704 YY1P25490 414 aa14.04□□□□□ -0.16
CAPN1-225ENST00000533704 MTHFSDQ2M296 383 aaKnown RBP14.04□□□□□ -0.16
CAPN1-225ENST00000533704 SSFA2P28290 1259 aa14.03□□□□□ -0.16
CAPN1-225ENST00000533704 SLC4A9Q96Q91 983 aa14.03□□□□□ -0.16
CAPN1-225ENST00000533704 LGR6Q9HBX8 967 aa14.03□□□□□ -0.16
CAPN1-225ENST00000533704 MAP3K5Q99683 1374 aa14.03□□□□□ -0.16
CAPN1-225ENST00000533704 TJP1Q07157 1748 aa14.02□□□□□ -0.16
CAPN1-225ENST00000533704 PPP2R1AP30153 589 aa14.02□□□□□ -0.17
CAPN1-225ENST00000533704 GPR162Q16538 588 aa14.02□□□□□ -0.17
CAPN1-225ENST00000533704 NLGN2Q8NFZ4 835 aa14.02□□□□□ -0.17
CAPN1-225ENST00000533704 RNMTO43148 476 aaKnown RBP14.01□□□□□ -0.17
CAPN1-225ENST00000533704 SLC52A2Q9HAB3 445 aa14.01□□□□□ -0.17
CAPN1-225ENST00000533704 RTCBQ9Y3I0 505 aaKnown RBP14.01□□□□□ -0.17
CAPN1-225ENST00000533704 NUDCQ9Y266 331 aa14□□□□□ -0.17
CAPN1-225ENST00000533704 C4AP0C0L4 1744 aa14□□□□□ -0.17
CAPN1-225ENST00000533704 ADAMTS7Q9UKP4 1686 aa13.99□□□□□ -0.17
CAPN1-225ENST00000533704 U2AF1L5P0DN76 240 aaPredicted RBP13.99□□□□□ -0.17
CAPN1-225ENST00000533704 U2AF1Q01081 240 aaKnown RBP eCLIP13.99□□□□□ -0.17
CAPN1-225ENST00000533704 SLC39A6Q13433 755 aa13.99□□□□□ -0.17
CAPN1-225ENST00000533704 TRAPPC3LQ5T215 181 aa13.99□□□□□ -0.17
CAPN1-225ENST00000533704 MRC1P22897 1456 aa13.99□□□□□ -0.17
CAPN1-225ENST00000533704 CNTNAP4Q9C0A0 1308 aa13.98□□□□□ -0.17
CAPN1-225ENST00000533704 PRKAR2BP31323 418 aa13.98□□□□□ -0.17
CAPN1-225ENST00000533704 GAS2L2Q8NHY3 880 aa13.98□□□□□ -0.17
CAPN1-225ENST00000533704 SIPA1L3O60292 1781 aaPredicted RBP13.97□□□□□ -0.17
CAPN1-225ENST00000533704 RFC4P35249 363 aa13.97□□□□□ -0.17
CAPN1-225ENST00000533704 CRKLP46109 303 aaKnown RBP13.97□□□□□ -0.17
CAPN1-225ENST00000533704 RC3H1Q5TC82 1133 aaKnown RBP13.97□□□□□ -0.17
CAPN1-225ENST00000533704 DNAJC10Q8IXB1 793 aa13.97□□□□□ -0.17
CAPN1-225ENST00000533704 CICQ96RK0 1608 aaPredicted RBP13.97□□□□□ -0.17
CAPN1-225ENST00000533704 UBR2Q8IWV8 1755 aa13.96□□□□□ -0.17
CAPN1-225ENST00000533704 GNAT3A8MTJ3 354 aa13.96□□□□□ -0.17
CAPN1-225ENST00000533704 RPS6KA4O75676 772 aa13.96□□□□□ -0.17
CAPN1-225ENST00000533704 TEFQ10587 303 aa13.96□□□□□ -0.17
CAPN1-225ENST00000533704 ARHGEF1Q92888 912 aaKnown RBP13.96□□□□□ -0.17
CAPN1-225ENST00000533704 PHACTR3Q96KR7 559 aa13.96□□□□□ -0.17
CAPN1-225ENST00000533704 RSPH6AQ9H0K4 717 aa13.96□□□□□ -0.17
CAPN1-225ENST00000533704 MMP10P09238 476 aa13.95□□□□□ -0.18
CAPN1-225ENST00000533704 ADRA2BP18089 450 aa13.95□□□□□ -0.18
CAPN1-225ENST00000533704 TTC5Q8N0Z6 440 aa13.95□□□□□ -0.18
CAPN1-225ENST00000533704 WWC3Q9ULE0 1092 aa13.95□□□□□ -0.18
CAPN1-225ENST00000533704 CD2APQ9Y5K6 639 aa13.95□□□□□ -0.18
CAPN1-225ENST00000533704 KCPQ6ZWJ8 1503 aa13.95□□□□□ -0.18
CAPN1-225ENST00000533704 IL17REQ8NFR9 667 aa13.94□□□□□ -0.18
CAPN1-225ENST00000533704 DLG5Q8TDM6 1919 aa13.94□□□□□ -0.18
CAPN1-225ENST00000533704 N4BP2Q86UW6 1770 aaPredicted RBP13.94□□□□□ -0.18
CAPN1-225ENST00000533704 NLGN1Q8N2Q7 840 aa13.93□□□□□ -0.18
CAPN1-225ENST00000533704 CCDC87Q9NVE4 849 aa13.93□□□□□ -0.18
CAPN1-225ENST00000533704 SRP68Q9UHB9 627 aaKnown RBP13.93□□□□□ -0.18
CAPN1-225ENST00000533704 YBX3P16989 372 aaKnown RBP eCLIP13.92□□□□□ -0.186e-9■■■□□ 14.8
CAPN1-225ENST00000533704 DDX10Q13206 875 aaKnown RBP13.92□□□□□ -0.18
CAPN1-225ENST00000533704 INTS5Q6P9B9 1019 aaKnown RBP13.92□□□□□ -0.18
CAPN1-225ENST00000533704 CYP19A1P11511 503 aaPredicted RBP13.91□□□□□ -0.18
CAPN1-225ENST00000533704 GYS1P13807 737 aa13.91□□□□□ -0.18
CAPN1-225ENST00000533704 RTF1Q92541 710 aaKnown RBP13.91□□□□□ -0.18
CAPN1-225ENST00000533704 PARP3Q9Y6F1 533 aa13.91□□□□□ -0.18
CAPN1-225ENST00000533704 KIF13BQ9NQT8 1826 aa13.91□□□□□ -0.18
CAPN1-225ENST00000533704 FCHSD2O94868 740 aa13.9□□□□□ -0.18
CAPN1-225ENST00000533704 NEFMP07197 916 aa13.9□□□□□ -0.18
CAPN1-225ENST00000533704 ZBTB1Q9Y2K1 713 aa13.9□□□□□ -0.18
CAPN1-225ENST00000533704 SOS1Q07889 1333 aaPredicted RBP13.9□□□□□ -0.19
CAPN1-225ENST00000533704 USP42Q9H9J4 1324 aaKnown RBP13.9□□□□□ -0.19
CAPN1-225ENST00000533704 GRIN3BO60391 1043 aa13.89□□□□□ -0.19
CAPN1-225ENST00000533704 ZPR1O75312 459 aa13.89□□□□□ -0.19
CAPN1-225ENST00000533704 CANXP27824 592 aaKnown RBP13.89□□□□□ -0.19
CAPN1-225ENST00000533704 ZNF790Q6PG37 636 aa13.89□□□□□ -0.19
CAPN1-225ENST00000533704 MCM10Q7L590 875 aa13.89□□□□□ -0.19
CAPN1-225ENST00000533704 ZNF496Q96IT1 587 aaPredicted RBP13.89□□□□□ -0.19
CAPN1-225ENST00000533704 COL15A1P39059 1388 aa13.88□□□□□ -0.19
CAPN1-225ENST00000533704 KIAA1551Q9HCM1 1747 aa13.88□□□□□ -0.19
CAPN1-225ENST00000533704 BTBD11A6QL63 1104 aa13.88□□□□□ -0.19
CAPN1-225ENST00000533704 STARD3NLO95772 234 aa13.88□□□□□ -0.19
CAPN1-225ENST00000533704 DCTN1Q14203 1278 aa13.88□□□□□ -0.19
CAPN1-225ENST00000533704 FKBP8Q14318 412 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms