RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 TMOD3Q9NYL9 352 aa21.72■■□□□ 1.07
CHMP4A-207ENST00000533523 WASHC2AQ641Q2 1341 aa21.72■■□□□ 1.07
CHMP4A-207ENST00000533523 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.71■■□□□ 1.07
CHMP4A-207ENST00000533523 LOC102724428A0A0B4J2F2 783 aa21.71■■□□□ 1.07
CHMP4A-207ENST00000533523 SIK1P57059 783 aa21.71■■□□□ 1.07
CHMP4A-207ENST00000533523 NKX1-1Q15270 411 aaPredicted RBP21.71■■□□□ 1.07
CHMP4A-207ENST00000533523 LINC00116Q8NCU8 138 aa21.7■■□□□ 1.06
CHMP4A-207ENST00000533523 TNNT2P45379 298 aaPredicted RBP21.69■■□□□ 1.06
CHMP4A-207ENST00000533523 GNPATO15228 680 aa21.68■■□□□ 1.06
CHMP4A-207ENST00000533523 SSFA2P28290 1259 aa21.68■■□□□ 1.06
CHMP4A-207ENST00000533523 POLKQ9UBT6 870 aa21.68■■□□□ 1.06
CHMP4A-207ENST00000533523 COL5A3P25940 1745 aaPredicted RBP21.68■■□□□ 1.06
CHMP4A-207ENST00000533523 PHKG2P15735 406 aa21.67■■□□□ 1.06
CHMP4A-207ENST00000533523 HTRA3P83110 453 aa21.67■■□□□ 1.06
CHMP4A-207ENST00000533523 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.67■■□□□ 1.066e-7■■■■□ 20.8
CHMP4A-207ENST00000533523 ASAP1Q9ULH1 1129 aa21.67■■□□□ 1.06
CHMP4A-207ENST00000533523 IFNL2Q8IZJ0 200 aa21.66■■□□□ 1.06
CHMP4A-207ENST00000533523 ZNF831Q5JPB2 1677 aa21.66■■□□□ 1.06
CHMP4A-207ENST00000533523 ATP6V1AP38606 617 aa21.65■■□□□ 1.06
CHMP4A-207ENST00000533523 ITPK1Q13572 414 aa21.65■■□□□ 1.06
CHMP4A-207ENST00000533523 EIF4A2Q14240 407 aaKnown RBP21.65■■□□□ 1.06
CHMP4A-207ENST00000533523 C4AP0C0L4 1744 aa21.65■■□□□ 1.06
CHMP4A-207ENST00000533523 ARFGEF1Q9Y6D6 1849 aa21.64■■□□□ 1.06
CHMP4A-207ENST00000533523 NMRK2Q9NPI5 230 aa21.64■■□□□ 1.05
CHMP4A-207ENST00000533523 KDRP35968 1356 aa21.63■■□□□ 1.05
CHMP4A-207ENST00000533523 APLP1P51693 650 aa21.62■■□□□ 1.05
CHMP4A-207ENST00000533523 COL13A1Q5TAT6 717 aaPredicted RBP21.62■■□□□ 1.05
CHMP4A-207ENST00000533523 C10orf71Q711Q0 1435 aa21.62■■□□□ 1.05
CHMP4A-207ENST00000533523 PLEKHG2Q9H7P9 1386 aa21.61■■□□□ 1.05
CHMP4A-207ENST00000533523 MYH14Q7Z406 1995 aaKnown RBP21.61■■□□□ 1.05
CHMP4A-207ENST00000533523 ATG3Q9NT62 314 aa21.61■■□□□ 1.05
CHMP4A-207ENST00000533523 SBF1O95248 1867 aa21.59■■□□□ 1.05
CHMP4A-207ENST00000533523 MMP10P09238 476 aa21.59■■□□□ 1.05
CHMP4A-207ENST00000533523 VIRMAQ69YN4 1812 aaKnown RBP21.59■■□□□ 1.05
CHMP4A-207ENST00000533523 RBM42Q9BTD8 480 aaKnown RBP21.58■■□□□ 1.05
CHMP4A-207ENST00000533523 KDM6AO15550 1401 aaPredicted RBP21.57■■□□□ 1.04
CHMP4A-207ENST00000533523 TOMM70O94826 608 aa21.57■■□□□ 1.04
CHMP4A-207ENST00000533523 ZNF530Q6P9A1 599 aaPredicted RBP21.56■■□□□ 1.04
CHMP4A-207ENST00000533523 RTCBQ9Y3I0 505 aaKnown RBP21.56■■□□□ 1.04
CHMP4A-207ENST00000533523 SCN11AQ9UI33 1791 aa21.56■■□□□ 1.04
CHMP4A-207ENST00000533523 HSP90AB1P08238 724 aaKnown RBP21.55■■□□□ 1.04
CHMP4A-207ENST00000533523 SLC4A9Q96Q91 983 aa21.55■■□□□ 1.04
CHMP4A-207ENST00000533523 TJP1Q07157 1748 aa21.55■■□□□ 1.04
CHMP4A-207ENST00000533523 KCPQ6ZWJ8 1503 aa21.55■■□□□ 1.04
CHMP4A-207ENST00000533523 ADAMTS7Q9UKP4 1686 aa21.54■■□□□ 1.04
CHMP4A-207ENST00000533523 A0A0G2JLW4 131 aa21.54■■□□□ 1.04
CHMP4A-207ENST00000533523 ERVV-2B6SEH9 535 aa21.54■■□□□ 1.04
CHMP4A-207ENST00000533523 EIF4G2P78344 907 aaKnown RBP eCLIP21.54■■□□□ 1.04
CHMP4A-207ENST00000533523 DCAF5Q96JK2 942 aa21.54■■□□□ 1.04
CHMP4A-207ENST00000533523 HSPA5P11021 654 aaKnown RBP21.53■■□□□ 1.04
CHMP4A-207ENST00000533523 KCNA3P22001 575 aa21.53■■□□□ 1.04
CHMP4A-207ENST00000533523 PLEKHO1Q53GL0 409 aaPredicted RBP21.53■■□□□ 1.04
CHMP4A-207ENST00000533523 TRAPPC3LQ5T215 181 aa21.53■■□□□ 1.04
CHMP4A-207ENST00000533523 JMYQ8N9B5 988 aa21.53■■□□□ 1.04
CHMP4A-207ENST00000533523 PANK3Q9H999 370 aa21.53■■□□□ 1.04
CHMP4A-207ENST00000533523 TNRC6CQ9HCJ0 1690 aaKnown RBP21.53■■□□□ 1.04
CHMP4A-207ENST00000533523 CNTNAP4Q9C0A0 1308 aa21.53■■□□□ 1.04
CHMP4A-207ENST00000533523 CABP4P57796 275 aa21.52■■□□□ 1.04
CHMP4A-207ENST00000533523 KLRG1Q96E93 195 aa21.51■■□□□ 1.03
CHMP4A-207ENST00000533523 DPEP1P16444 411 aa21.5■■□□□ 1.03
CHMP4A-207ENST00000533523 ADRA2BP18089 450 aa21.5■■□□□ 1.03
CHMP4A-207ENST00000533523 C1orf141Q5JVX7 400 aa21.5■■□□□ 1.03
CHMP4A-207ENST00000533523 AEBP1Q8IUX7 1158 aa21.5■■□□□ 1.03
CHMP4A-207ENST00000533523 BCS1LQ9Y276 419 aa21.5■■□□□ 1.03
CHMP4A-207ENST00000533523 RFC4P35249 363 aa21.49■■□□□ 1.03
CHMP4A-207ENST00000533523 AMOTQ4VCS5 1084 aa21.49■■□□□ 1.03
CHMP4A-207ENST00000533523 RC3H1Q5TC82 1133 aaKnown RBP21.49■■□□□ 1.03
CHMP4A-207ENST00000533523 MORC1Q86VD1 984 aa21.49■■□□□ 1.03
CHMP4A-207ENST00000533523 NLGN1Q8N2Q7 840 aa21.49■■□□□ 1.03
CHMP4A-207ENST00000533523 ARHGEF1Q92888 912 aaKnown RBP21.49■■□□□ 1.03
CHMP4A-207ENST00000533523 CCDC87Q9NVE4 849 aa21.49■■□□□ 1.03
CHMP4A-207ENST00000533523 CAPN15O75808 1086 aa21.48■■□□□ 1.03
CHMP4A-207ENST00000533523 PTCD1O75127 700 aaKnown RBP21.47■■□□□ 1.03
CHMP4A-207ENST00000533523 GYS1P13807 737 aa21.47■■□□□ 1.03
CHMP4A-207ENST00000533523 MTHFSP49914 203 aa21.47■■□□□ 1.03
CHMP4A-207ENST00000533523 RBM46Q8TBY0 533 aaKnown RBP21.47■■□□□ 1.03
CHMP4A-207ENST00000533523 PARP3Q9Y6F1 533 aa21.47■■□□□ 1.03
CHMP4A-207ENST00000533523 RPS6KA4O75676 772 aa21.46■■□□□ 1.03
CHMP4A-207ENST00000533523 TGFB2P61812 414 aa21.46■■□□□ 1.03
CHMP4A-207ENST00000533523 CRKLP46109 303 aaKnown RBP21.45■■□□□ 1.02
CHMP4A-207ENST00000533523 C9orf131Q5VYM1 1079 aa21.45■■□□□ 1.02
CHMP4A-207ENST00000533523 ARHGAP27Q6ZUM4 889 aa21.45■■□□□ 1.02
CHMP4A-207ENST00000533523 SULT6B1Q6IMI4 303 aa21.44■■□□□ 1.02
CHMP4A-207ENST00000533523 FCHSD2O94868 740 aa21.43■■□□□ 1.02
CHMP4A-207ENST00000533523 SRP68Q9UHB9 627 aaKnown RBP21.43■■□□□ 1.02
CHMP4A-207ENST00000533523 TIAM2Q8IVF5 1701 aa21.43■■□□□ 1.02
CHMP4A-207ENST00000533523 PRELPP51888 382 aa21.42■■□□□ 1.02
CHMP4A-207ENST00000533523 AFDNP55196 1824 aaKnown RBP21.42■■□□□ 1.02
CHMP4A-207ENST00000533523 CCDC88AQ3V6T2 1871 aa21.42■■□□□ 1.02
CHMP4A-207ENST00000533523 NFATC2IPQ8NCF5 419 aa21.42■■□□□ 1.02
CHMP4A-207ENST00000533523 DLEC1Q9Y238 1755 aa21.42■■□□□ 1.02
CHMP4A-207ENST00000533523 KNSTRNQ9Y448 316 aa21.42■■□□□ 1.02
CHMP4A-207ENST00000533523 USP42Q9H9J4 1324 aaKnown RBP21.4■■□□□ 1.02
CHMP4A-207ENST00000533523 MRC1P22897 1456 aa21.39■■□□□ 1.02
CHMP4A-207ENST00000533523 DDR1Q08345 913 aa21.39■■□□□ 1.01
CHMP4A-207ENST00000533523 IL13P35225 146 aa21.38■■□□□ 1.01
CHMP4A-207ENST00000533523 FKBP8Q14318 412 aa21.38■■□□□ 1.01
CHMP4A-207ENST00000533523 NRXN2Q9P2S2 1712 aa21.38■■□□□ 1.01
CHMP4A-207ENST00000533523 FSTL1Q12841 308 aa21.37■■□□□ 1.01
CHMP4A-207ENST00000533523 UBR2Q8IWV8 1755 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms