RNA–Protein interactions for RNA: ENST00000533196.1

SMPD1-209, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 3

Gene SMPD1, Length 425 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-209ENST00000533196 DIAPH1O60610 1272 aaKnown RBP31.73■■■□□ 2.67
SMPD1-209ENST00000533196 ATP6V1AP38606 617 aa31.71■■■□□ 2.67
SMPD1-209ENST00000533196 CABP4P57796 275 aa31.7■■■□□ 2.67
SMPD1-209ENST00000533196 SCN11AQ9UI33 1791 aa31.68■■■□□ 2.66
SMPD1-209ENST00000533196 SSFA2P28290 1259 aa31.68■■■□□ 2.66
SMPD1-209ENST00000533196 LINC00116Q8NCU8 138 aa31.68■■■□□ 2.66
SMPD1-209ENST00000533196 AKAP4Q5JQC9 854 aa31.67■■■□□ 2.66
SMPD1-209ENST00000533196 ITPK1Q13572 414 aa31.66■■■□□ 2.66
SMPD1-209ENST00000533196 COL3A1P02461 1466 aaPredicted RBP31.65■■■□□ 2.66
SMPD1-209ENST00000533196 HMOX1P09601 288 aa31.64■■■□□ 2.66
SMPD1-209ENST00000533196 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.63■■■□□ 2.65
SMPD1-209ENST00000533196 YY1P25490 414 aa31.63■■■□□ 2.65
SMPD1-209ENST00000533196 RBM42Q9BTD8 480 aaKnown RBP31.61■■■□□ 2.65
SMPD1-209ENST00000533196 VIRMAQ69YN4 1812 aaKnown RBP31.61■■■□□ 2.65
SMPD1-209ENST00000533196 COL5A3P25940 1745 aaPredicted RBP31.61■■■□□ 2.65
SMPD1-209ENST00000533196 AMIGO3Q86WK7 504 aa31.6■■■□□ 2.65
SMPD1-209ENST00000533196 KLHL34Q8N239 644 aa31.6■■■□□ 2.65
SMPD1-209ENST00000533196 NFATC2IPQ8NCF5 419 aa31.6■■■□□ 2.65
SMPD1-209ENST00000533196 GNPATO15228 680 aa31.59■■■□□ 2.65
SMPD1-209ENST00000533196 PHF14O94880 888 aa31.59■■■□□ 2.65
SMPD1-209ENST00000533196 RC3H1Q5TC82 1133 aaKnown RBP31.59■■■□□ 2.65
SMPD1-209ENST00000533196 MSL1Q68DK7 614 aa31.59■■■□□ 2.65
SMPD1-209ENST00000533196 SLC4A9Q96Q91 983 aa31.59■■■□□ 2.65
SMPD1-209ENST00000533196 CHD4Q14839 1912 aa31.58■■■□□ 2.65
SMPD1-209ENST00000533196 CNGB1Q14028 1251 aaPredicted RBP31.58■■■□□ 2.65
SMPD1-209ENST00000533196 CNTNAP4Q9C0A0 1308 aa31.56■■■□□ 2.64
SMPD1-209ENST00000533196 CFAP53Q96M91 514 aa31.56■■■□□ 2.64
SMPD1-209ENST00000533196 CICQ96RK0 1608 aaPredicted RBP31.56■■■□□ 2.64
SMPD1-209ENST00000533196 ADAMTS7Q9UKP4 1686 aa31.55■■■□□ 2.64
SMPD1-209ENST00000533196 MRC1P22897 1456 aa31.55■■■□□ 2.64
SMPD1-209ENST00000533196 MTHFSDQ2M296 383 aaKnown RBP31.55■■■□□ 2.64
SMPD1-209ENST00000533196 SLC52A2Q9HAB3 445 aa31.55■■■□□ 2.64
SMPD1-209ENST00000533196 RTCBQ9Y3I0 505 aaKnown RBP31.55■■■□□ 2.64
SMPD1-209ENST00000533196 RNMTO43148 476 aaKnown RBP31.54■■■□□ 2.64
SMPD1-209ENST00000533196 ADRA2BP18089 450 aa31.54■■■□□ 2.64
SMPD1-209ENST00000533196 CD2APQ9Y5K6 639 aa31.54■■■□□ 2.64
SMPD1-209ENST00000533196 U2SURPO15042 1029 aaKnown RBP31.53■■■□□ 2.64
SMPD1-209ENST00000533196 TRAPPC3LQ5T215 181 aa31.52■■■□□ 2.64
SMPD1-209ENST00000533196 MYH14Q7Z406 1995 aaKnown RBP31.52■■■□□ 2.64
SMPD1-209ENST00000533196 GPR162Q16538 588 aa31.51■■■□□ 2.63
SMPD1-209ENST00000533196 LGR6Q9HBX8 967 aa31.51■■■□□ 2.63
SMPD1-209ENST00000533196 PTCD1O75127 700 aaKnown RBP31.5■■■□□ 2.63
SMPD1-209ENST00000533196 SMIM5Q71RC9 77 aa31.5■■■□□ 2.63
SMPD1-209ENST00000533196 NLGN2Q8NFZ4 835 aa31.5■■■□□ 2.63
SMPD1-209ENST00000533196 RPS6KA4O75676 772 aa31.49■■■□□ 2.63
SMPD1-209ENST00000533196 GAS2L2Q8NHY3 880 aa31.49■■■□□ 2.63
SMPD1-209ENST00000533196 NUDCQ9Y266 331 aa31.48■■■□□ 2.63
SMPD1-209ENST00000533196 TJP1Q07157 1748 aa31.47■■■□□ 2.63
SMPD1-209ENST00000533196 PPP2R1AP30153 589 aa31.47■■■□□ 2.63
SMPD1-209ENST00000533196 NLGN1Q8N2Q7 840 aa31.44■■■□□ 2.62
SMPD1-209ENST00000533196 ARHGEF1Q92888 912 aaKnown RBP31.44■■■□□ 2.62
SMPD1-209ENST00000533196 UTRNP46939 3433 aa31.42■■■□□ 2.62
SMPD1-209ENST00000533196 GNAT3A8MTJ3 354 aa31.42■■■□□ 2.62
SMPD1-209ENST00000533196 CRKLP46109 303 aaKnown RBP31.42■■■□□ 2.62
SMPD1-209ENST00000533196 GRIN3BO60391 1043 aa31.41■■■□□ 2.62
SMPD1-209ENST00000533196 RFC4P35249 363 aa31.41■■■□□ 2.62
SMPD1-209ENST00000533196 PELP1Q8IZL8 1130 aaKnown RBP31.4■■■□□ 2.62
SMPD1-209ENST00000533196 RSPH6AQ9H0K4 717 aa31.4■■■□□ 2.62
SMPD1-209ENST00000533196 C4AP0C0L4 1744 aa31.4■■■□□ 2.62
SMPD1-209ENST00000533196 VSIG10Q8N0Z9 540 aa31.39■■■□□ 2.62
SMPD1-209ENST00000533196 KCPQ6ZWJ8 1503 aa31.39■■■□□ 2.61
SMPD1-209ENST00000533196 UBR2Q8IWV8 1755 aa31.38■■■□□ 2.61
SMPD1-209ENST00000533196 PRKAR2BP31323 418 aa31.38■■■□□ 2.61
SMPD1-209ENST00000533196 MMP10P09238 476 aa31.37■■■□□ 2.61
SMPD1-209ENST00000533196 SLC39A6Q13433 755 aa31.37■■■□□ 2.61
SMPD1-209ENST00000533196 FCHSD2O94868 740 aa31.36■■■□□ 2.61
SMPD1-209ENST00000533196 GYS1P13807 737 aa31.36■■■□□ 2.61
SMPD1-209ENST00000533196 TEFQ10587 303 aa31.36■■■□□ 2.61
SMPD1-209ENST00000533196 DNAJC10Q8IXB1 793 aa31.36■■■□□ 2.61
SMPD1-209ENST00000533196 SIPA1L3O60292 1781 aaPredicted RBP31.35■■■□□ 2.61
SMPD1-209ENST00000533196 U2AF1L5P0DN76 240 aaPredicted RBP31.35■■■□□ 2.61
SMPD1-209ENST00000533196 U2AF1Q01081 240 aaKnown RBP eCLIP31.35■■■□□ 2.61
SMPD1-209ENST00000533196 IL17REQ8NFR9 667 aa31.35■■■□□ 2.61
SMPD1-209ENST00000533196 KIF13BQ9NQT8 1826 aa31.35■■■□□ 2.61
SMPD1-209ENST00000533196 INTS5Q6P9B9 1019 aaKnown RBP31.34■■■□□ 2.61
SMPD1-209ENST00000533196 TTC5Q8N0Z6 440 aa31.34■■■□□ 2.61
SMPD1-209ENST00000533196 CCDC87Q9NVE4 849 aa31.34■■■□□ 2.61
SMPD1-209ENST00000533196 YBX3P16989 372 aaKnown RBP eCLIP31.33■■■□□ 2.61
SMPD1-209ENST00000533196 PHACTR3Q96KR7 559 aa31.33■■■□□ 2.61
SMPD1-209ENST00000533196 CEMIPQ8WUJ3 1361 aa31.32■■■□□ 2.6
SMPD1-209ENST00000533196 CYP19A1P11511 503 aaPredicted RBP31.32■■■□□ 2.6
SMPD1-209ENST00000533196 USP42Q9H9J4 1324 aaKnown RBP31.3■■■□□ 2.6
SMPD1-209ENST00000533196 ZNF784Q8NCA9 323 aaPredicted RBP31.29■■■□□ 2.6
SMPD1-209ENST00000533196 SOS1Q07889 1333 aaPredicted RBP31.28■■■□□ 2.6
SMPD1-209ENST00000533196 ZNF790Q6PG37 636 aa31.28■■■□□ 2.6
SMPD1-209ENST00000533196 PARP3Q9Y6F1 533 aa31.28■■■□□ 2.6
SMPD1-209ENST00000533196 TEX13AQ9BXU3 409 aaPredicted RBP31.27■■■□□ 2.6
SMPD1-209ENST00000533196 GOLGB1Q14789 3259 aaKnown RBP31.27■■■□□ 2.6
SMPD1-209ENST00000533196 C10orf71Q711Q0 1435 aa31.26■■■□□ 2.6
SMPD1-209ENST00000533196 TGFB2P61812 414 aa31.26■■■□□ 2.59
SMPD1-209ENST00000533196 STARD3NLO95772 234 aa31.25■■■□□ 2.59
SMPD1-209ENST00000533196 HTATSF1O43719 755 aaKnown RBP31.24■■■□□ 2.59
SMPD1-209ENST00000533196 ZPR1O75312 459 aa31.24■■■□□ 2.59
SMPD1-209ENST00000533196 RTF1Q92541 710 aaKnown RBP31.24■■■□□ 2.59
SMPD1-209ENST00000533196 SRP68Q9UHB9 627 aaKnown RBP31.24■■■□□ 2.59
SMPD1-209ENST00000533196 HEG1Q9ULI3 1381 aa31.24■■■□□ 2.59
SMPD1-209ENST00000533196 ZNF496Q96IT1 587 aaPredicted RBP31.23■■■□□ 2.59
SMPD1-209ENST00000533196 ZBTB1Q9Y2K1 713 aa31.23■■■□□ 2.59
SMPD1-209ENST00000533196 COL15A1P39059 1388 aa31.22■■■□□ 2.59
SMPD1-209ENST00000533196 KIAA1551Q9HCM1 1747 aa31.22■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms