RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NFATC2IPQ8NCF5 419 aa8.2□□□□□ -1.1
CD44-235ENST00000532339 A0A1B0GTH6 734 aa8.19□□□□□ -1.1
CD44-235ENST00000532339 STAU1O95793 577 aaKnown RBP8.19□□□□□ -1.1
CD44-235ENST00000532339 INHAP05111 366 aa8.19□□□□□ -1.1
CD44-235ENST00000532339 SKIP12755 728 aa8.19□□□□□ -1.1
CD44-235ENST00000532339 PHKA2P46019 1235 aa8.19□□□□□ -1.1
CD44-235ENST00000532339 SCNN1DP51172 638 aa8.19□□□□□ -1.1
CD44-235ENST00000532339 EML3Q32P44 896 aa8.19□□□□□ -1.1
CD44-235ENST00000532339 RHBDD1Q8TEB9 315 aa8.19□□□□□ -1.1
CD44-235ENST00000532339 TRERF1Q96PN7 1200 aa8.19□□□□□ -1.1
CD44-235ENST00000532339 SRSF11Q05519 484 aaKnown RBP8.18□□□□□ -1.1
CD44-235ENST00000532339 GAS6Q14393 721 aa8.18□□□□□ -1.1
CD44-235ENST00000532339 C4orf17Q53FE4 359 aa8.18□□□□□ -1.1
CD44-235ENST00000532339 PPARGC1BQ86YN6 1023 aaKnown RBP8.18□□□□□ -1.1
CD44-235ENST00000532339 NUCKS1Q9H1E3 243 aaKnown RBP8.18□□□□□ -1.1
CD44-235ENST00000532339 ADAMTS2O95450 1211 aa8.17□□□□□ -1.1
CD44-235ENST00000532339 SVOPQ8N4V2 548 aa8.17□□□□□ -1.1
CD44-235ENST00000532339 GTPBP3Q969Y2 492 aaKnown RBP8.17□□□□□ -1.1
CD44-235ENST00000532339 MBIPQ9NS73 344 aa8.17□□□□□ -1.1
CD44-235ENST00000532339 NOD1Q9Y239 953 aa8.17□□□□□ -1.1
CD44-235ENST00000532339 RB1CC1Q8TDY2 1594 aa8.17□□□□□ -1.1
CD44-235ENST00000532339 GPR25O00155 361 aa8.16□□□□□ -1.1
CD44-235ENST00000532339 ZNF385CQ66K41 422 aaPredicted RBP8.16□□□□□ -1.1
CD44-235ENST00000532339 GPAMQ9HCL2 828 aa8.16□□□□□ -1.1
CD44-235ENST00000532339 CCDC180Q9P1Z9 1646 aa8.16□□□□□ -1.1
CD44-235ENST00000532339 CECR2Q9BXF3 1484 aa8.15□□□□□ -1.1
CD44-235ENST00000532339 POM121CA8CG34 1229 aa8.15□□□□□ -1.1
CD44-235ENST00000532339 CSB-PGBD3P0DP91 1061 aa8.15□□□□□ -1.1
CD44-235ENST00000532339 SMTNP53814 917 aa8.15□□□□□ -1.1
CD44-235ENST00000532339 LBRQ14739 615 aaKnown RBP8.15□□□□□ -1.1
CD44-235ENST00000532339 PGBD3Q8N328 593 aa8.15□□□□□ -1.1
CD44-235ENST00000532339 PCDHGA11Q9Y5H2 935 aa8.15□□□□□ -1.1
CD44-235ENST00000532339 USP17L5A8MUK1 530 aa8.14□□□□□ -1.11
CD44-235ENST00000532339 NCOA4Q13772 614 aa8.14□□□□□ -1.11
CD44-235ENST00000532339 WHAMMQ8TF30 809 aa8.14□□□□□ -1.11
CD44-235ENST00000532339 SERTAD1Q9UHV2 236 aa8.14□□□□□ -1.11
CD44-235ENST00000532339 TMEM229AB2RXF0 380 aa8.13□□□□□ -1.11
CD44-235ENST00000532339 MSX1P28360 303 aa8.13□□□□□ -1.11
CD44-235ENST00000532339 GTF2IP78347 998 aa8.13□□□□□ -1.11
CD44-235ENST00000532339 HDGFL1Q5TGJ6 251 aa8.13□□□□□ -1.11
CD44-235ENST00000532339 TBC1D9Q6ZT07 1266 aa8.13□□□□□ -1.11
CD44-235ENST00000532339 ADAMTS19Q8TE59 1207 aa8.13□□□□□ -1.11
CD44-235ENST00000532339 SLC4A9Q96Q91 983 aa8.13□□□□□ -1.11
CD44-235ENST00000532339 NIFKQ9BYG3 293 aaKnown RBP8.13□□□□□ -1.11
CD44-235ENST00000532339 ADAMTS8Q9UP79 889 aa8.13□□□□□ -1.11
CD44-235ENST00000532339 IGF1RP08069 1367 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 BACH1O14867 736 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 PLA2G4AP47712 749 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 MAP3K10Q02779 954 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 PSME1Q06323 249 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 EFHC2Q5JST6 749 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 CLUAP1Q96AJ1 413 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 CFHR5Q9BXR6 569 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 NSFL1CQ9UNZ2 370 aaKnown RBP8.12□□□□□ -1.11
CD44-235ENST00000532339 PHF24Q9UPV7 400 aa8.12□□□□□ -1.11
CD44-235ENST00000532339 A6NJY4 79 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 CDK2AP1O14519 115 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 ARHGEF15O94989 841 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 MX2P20592 715 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 MTFR1Q15390 333 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 LYPD4Q6UWN0 246 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 PROSER2Q86WR7 435 aaPredicted RBP8.11□□□□□ -1.11
CD44-235ENST00000532339 TRIM50Q86XT4 487 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 PLEKHM2Q8IWE5 1019 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 DEPDC4Q8N2C3 294 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 C1orf216Q8TAB5 229 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 RUBCNLQ9H714 662 aa8.11□□□□□ -1.11
CD44-235ENST00000532339 RNF225M0QZC1 329 aaPredicted RBP8.1□□□□□ -1.11
CD44-235ENST00000532339 THBS1P07996 1170 aa8.1□□□□□ -1.11
CD44-235ENST00000532339 CRISPLD1Q9H336 500 aa8.1□□□□□ -1.11
CD44-235ENST00000532339 USP17L3A6NCW0 530 aa8.09□□□□□ -1.11
CD44-235ENST00000532339 USP17L4A6NCW7 530 aa8.09□□□□□ -1.11
CD44-235ENST00000532339 ATP9BO43861 1147 aa8.09□□□□□ -1.11
CD44-235ENST00000532339 CELA2BP08218 269 aaPredicted RBP8.09□□□□□ -1.11
CD44-235ENST00000532339 USP17L2Q6R6M4 530 aa8.09□□□□□ -1.11
CD44-235ENST00000532339 USP17L1Q7RTZ2 530 aa8.09□□□□□ -1.11
CD44-235ENST00000532339 FNBP4Q8N3X1 1017 aaPredicted RBP8.09□□□□□ -1.11
CD44-235ENST00000532339 UCN2Q96RP3 112 aa8.09□□□□□ -1.11
CD44-235ENST00000532339 ENAMQ9NRM1 1142 aa8.09□□□□□ -1.11
CD44-235ENST00000532339 MAP2K3P46734 347 aa8.08□□□□□ -1.12
CD44-235ENST00000532339 ATP1A2P50993 1020 aa8.08□□□□□ -1.12
CD44-235ENST00000532339 KCNMA1Q12791 1236 aa8.08□□□□□ -1.12
CD44-235ENST00000532339 NBPF1Q3BBV0 1214 aa8.08□□□□□ -1.12
CD44-235ENST00000532339 AIDAQ96BJ3 306 aa8.08□□□□□ -1.12
CD44-235ENST00000532339 ZNF358Q9NW07 568 aa8.08□□□□□ -1.12
CD44-235ENST00000532339 CABP1Q9NZU7 370 aa8.08□□□□□ -1.12
CD44-235ENST00000532339 IQSEC3Q9UPP2 1182 aaPredicted RBP8.08□□□□□ -1.12
CD44-235ENST00000532339 MARSP56192 900 aaKnown RBP8.07□□□□□ -1.12
CD44-235ENST00000532339 UBAP2LQ14157 1087 aaKnown RBP8.07□□□□□ -1.12
CD44-235ENST00000532339 FIGNL1Q6PIW4 674 aa8.07□□□□□ -1.12
CD44-235ENST00000532339 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.07□□□□□ -1.12
CD44-235ENST00000532339 ATXN7L1Q9ULK2 861 aaPredicted RBP8.07□□□□□ -1.12
CD44-235ENST00000532339 CUX2O14529 1486 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 A6NJR5 290 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 BCRP11274 1271 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 TATP17735 454 aaPredicted RBP8.06□□□□□ -1.12
CD44-235ENST00000532339 ATP4AP20648 1035 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 NLRP8Q86W28 1048 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 ZNF295-AS1Q8N0V1 137 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 GLMNQ92990 594 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms