RNA–Protein interactions for RNA: ENST00000530395.1

SMPD1-204, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 5

Gene SMPD1, Length 447 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-204ENST00000530395 AEBP1Q8IUX7 1158 aa28.44■■■□□ 2.14
SMPD1-204ENST00000530395 PELP1Q8IZL8 1130 aaKnown RBP28.44■■■□□ 2.14
SMPD1-204ENST00000530395 NLGN2Q8NFZ4 835 aa28.44■■■□□ 2.14
SMPD1-204ENST00000530395 ZNF831Q5JPB2 1677 aa28.44■■■□□ 2.14
SMPD1-204ENST00000530395 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.43■■■□□ 2.14
SMPD1-204ENST00000530395 C1orf141Q5JVX7 400 aa28.43■■■□□ 2.14
SMPD1-204ENST00000530395 KDRP35968 1356 aa28.42■■■□□ 2.14
SMPD1-204ENST00000530395 SULT6B1Q6IMI4 303 aa28.42■■■□□ 2.14
SMPD1-204ENST00000530395 KDM6AO15550 1401 aaPredicted RBP28.42■■■□□ 2.14
SMPD1-204ENST00000530395 ITPK1Q13572 414 aa28.41■■■□□ 2.14
SMPD1-204ENST00000530395 IL13P35225 146 aa28.4■■■□□ 2.14
SMPD1-204ENST00000530395 AMIGO3Q86WK7 504 aa28.4■■■□□ 2.14
SMPD1-204ENST00000530395 GNPATO15228 680 aa28.39■■■□□ 2.14
SMPD1-204ENST00000530395 MTHFSP49914 203 aa28.39■■■□□ 2.14
SMPD1-204ENST00000530395 CABP4P57796 275 aa28.39■■■□□ 2.14
SMPD1-204ENST00000530395 COL5A3P25940 1745 aaPredicted RBP28.38■■■□□ 2.13
SMPD1-204ENST00000530395 CD2APQ9Y5K6 639 aa28.38■■■□□ 2.13
SMPD1-204ENST00000530395 ZNF784Q8NCA9 323 aaPredicted RBP28.37■■■□□ 2.13
SMPD1-204ENST00000530395 RBM42Q9BTD8 480 aaKnown RBP28.37■■■□□ 2.13
SMPD1-204ENST00000530395 SCN11AQ9UI33 1791 aa28.37■■■□□ 2.13
SMPD1-204ENST00000530395 SMIM5Q71RC9 77 aa28.35■■■□□ 2.13
SMPD1-204ENST00000530395 PER1O15534 1290 aaPredicted RBP28.34■■■□□ 2.13
SMPD1-204ENST00000530395 CC2D1BQ5T0F9 858 aaKnown RBP28.34■■■□□ 2.13
SMPD1-204ENST00000530395 GRIN3BO60391 1043 aa28.33■■■□□ 2.13
SMPD1-204ENST00000530395 RTCBQ9Y3I0 505 aaKnown RBP28.32■■■□□ 2.12
SMPD1-204ENST00000530395 VIRMAQ69YN4 1812 aaKnown RBP28.31■■■□□ 2.12
SMPD1-204ENST00000530395 SLC4A9Q96Q91 983 aa28.3■■■□□ 2.12
SMPD1-204ENST00000530395 NPC1L1Q9UHC9 1359 aa28.29■■■□□ 2.12
SMPD1-204ENST00000530395 CNTNAP4Q9C0A0 1308 aa28.29■■■□□ 2.12
SMPD1-204ENST00000530395 YBX3P16989 372 aaKnown RBP eCLIP28.29■■■□□ 2.12
SMPD1-204ENST00000530395 AKAP4Q5JQC9 854 aa28.29■■■□□ 2.12
SMPD1-204ENST00000530395 TRAPPC3LQ5T215 181 aa28.29■■■□□ 2.12
SMPD1-204ENST00000530395 RC3H1Q5TC82 1133 aaKnown RBP28.29■■■□□ 2.12
SMPD1-204ENST00000530395 NFATC2IPQ8NCF5 419 aa28.29■■■□□ 2.12
SMPD1-204ENST00000530395 DIAPH1O60610 1272 aaKnown RBP28.28■■■□□ 2.12
SMPD1-204ENST00000530395 HMOX1P09601 288 aa28.27■■■□□ 2.12
SMPD1-204ENST00000530395 ADRA2BP18089 450 aa28.27■■■□□ 2.12
SMPD1-204ENST00000530395 CICQ96RK0 1608 aaPredicted RBP28.26■■■□□ 2.11
SMPD1-204ENST00000530395 PTCD1O75127 700 aaKnown RBP28.26■■■□□ 2.11
SMPD1-204ENST00000530395 MYH14Q7Z406 1995 aaKnown RBP28.26■■■□□ 2.11
SMPD1-204ENST00000530395 C4AP0C0L4 1744 aa28.24■■■□□ 2.11
SMPD1-204ENST00000530395 TJP1Q07157 1748 aa28.24■■■□□ 2.11
SMPD1-204ENST00000530395 RPS6KA4O75676 772 aa28.23■■■□□ 2.11
SMPD1-204ENST00000530395 MRC1P22897 1456 aa28.22■■■□□ 2.11
SMPD1-204ENST00000530395 MMP10P09238 476 aa28.22■■■□□ 2.11
SMPD1-204ENST00000530395 NLGN1Q8N2Q7 840 aa28.22■■■□□ 2.11
SMPD1-204ENST00000530395 RFC4P35249 363 aa28.21■■■□□ 2.11
SMPD1-204ENST00000530395 CNGB1Q14028 1251 aaPredicted RBP28.21■■■□□ 2.11
SMPD1-204ENST00000530395 ARHGEF1Q92888 912 aaKnown RBP28.21■■■□□ 2.11
SMPD1-204ENST00000530395 SLC52A2Q9HAB3 445 aa28.21■■■□□ 2.11
SMPD1-204ENST00000530395 COL3A1P02461 1466 aaPredicted RBP28.21■■■□□ 2.11
SMPD1-204ENST00000530395 KIF13BQ9NQT8 1826 aa28.2■■■□□ 2.11
SMPD1-204ENST00000530395 ADAMTS7Q9UKP4 1686 aa28.19■■■□□ 2.1
SMPD1-204ENST00000530395 RNMTO43148 476 aaKnown RBP28.18■■■□□ 2.1
SMPD1-204ENST00000530395 CRKLP46109 303 aaKnown RBP28.18■■■□□ 2.1
SMPD1-204ENST00000530395 MTHFSDQ2M296 383 aaKnown RBP28.17■■■□□ 2.1
SMPD1-204ENST00000530395 LGR6Q9HBX8 967 aa28.17■■■□□ 2.1
SMPD1-204ENST00000530395 U2SURPO15042 1029 aaKnown RBP28.15■■■□□ 2.1
SMPD1-204ENST00000530395 GYS1P13807 737 aa28.15■■■□□ 2.1
SMPD1-204ENST00000530395 KIAA1551Q9HCM1 1747 aa28.12■■■□□ 2.09
SMPD1-204ENST00000530395 N4BP2Q86UW6 1770 aaPredicted RBP28.12■■■□□ 2.09
SMPD1-204ENST00000530395 C10orf71Q711Q0 1435 aa28.12■■■□□ 2.09
SMPD1-204ENST00000530395 CCDC87Q9NVE4 849 aa28.12■■■□□ 2.09
SMPD1-204ENST00000530395 WWC3Q9ULE0 1092 aa28.12■■■□□ 2.09
SMPD1-204ENST00000530395 PARP3Q9Y6F1 533 aa28.12■■■□□ 2.09
SMPD1-204ENST00000530395 PXDNLA1KZ92 1463 aa28.11■■■□□ 2.09
SMPD1-204ENST00000530395 CFAP53Q96M91 514 aa28.11■■■□□ 2.09
SMPD1-204ENST00000530395 KCPQ6ZWJ8 1503 aa28.11■■■□□ 2.09
SMPD1-204ENST00000530395 UBR2Q8IWV8 1755 aa28.1■■■□□ 2.09
SMPD1-204ENST00000530395 GIGYF1O75420 1035 aaPredicted RBP28.1■■■□□ 2.09
SMPD1-204ENST00000530395 TGFB2P61812 414 aa28.1■■■□□ 2.09
SMPD1-204ENST00000530395 DNAJC10Q8IXB1 793 aa28.1■■■□□ 2.09
SMPD1-204ENST00000530395 SLC39A6Q13433 755 aa28.09■■■□□ 2.09
SMPD1-204ENST00000530395 GAS2L2Q8NHY3 880 aa28.09■■■□□ 2.09
SMPD1-204ENST00000530395 USP42Q9H9J4 1324 aaKnown RBP28.09■■■□□ 2.09
SMPD1-204ENST00000530395 INTS5Q6P9B9 1019 aaKnown RBP28.08■■■□□ 2.09
SMPD1-204ENST00000530395 C1QTNF8P60827 252 aa28.07■■■□□ 2.08
SMPD1-204ENST00000530395 ATP10DQ9P241 1426 aa28.07■■■□□ 2.08
SMPD1-204ENST00000530395 SRP68Q9UHB9 627 aaKnown RBP28.06■■■□□ 2.08
SMPD1-204ENST00000530395 GNAT3A8MTJ3 354 aa28.05■■■□□ 2.08
SMPD1-204ENST00000530395 TTC5Q8N0Z6 440 aa28.05■■■□□ 2.08
SMPD1-204ENST00000530395 VSIG10Q8N0Z9 540 aa28.05■■■□□ 2.08
SMPD1-204ENST00000530395 SIPA1L3O60292 1781 aaPredicted RBP28.04■■■□□ 2.08
SMPD1-204ENST00000530395 CYP19A1P11511 503 aaPredicted RBP28.04■■■□□ 2.08
SMPD1-204ENST00000530395 TEFQ10587 303 aa28.04■■■□□ 2.08
SMPD1-204ENST00000530395 BRCA1P38398 1863 aaKnown RBP28.04■■■□□ 2.08
SMPD1-204ENST00000530395 SOS1Q07889 1333 aaPredicted RBP28.03■■■□□ 2.08
SMPD1-204ENST00000530395 ZPR1O75312 459 aa28.03■■■□□ 2.08
SMPD1-204ENST00000530395 FKBP8Q14318 412 aa28.03■■■□□ 2.08
SMPD1-204ENST00000530395 NUDCQ9Y266 331 aa28.03■■■□□ 2.08
SMPD1-204ENST00000530395 ADCY9O60503 1353 aa28.02■■■□□ 2.08
SMPD1-204ENST00000530395 A0A0G2JLW4 131 aa28.02■■■□□ 2.08
SMPD1-204ENST00000530395 COL15A1P39059 1388 aa28■■■□□ 2.07
SMPD1-204ENST00000530395 BCS1LQ9Y276 419 aa28■■■□□ 2.07
SMPD1-204ENST00000530395 DPEP1P16444 411 aa27.99■■■□□ 2.07
SMPD1-204ENST00000530395 PRKAR2BP31323 418 aa27.99■■■□□ 2.07
SMPD1-204ENST00000530395 ZBTB1Q9Y2K1 713 aa27.99■■■□□ 2.07
SMPD1-204ENST00000530395 SENP3-EIF4A1A0A087X0R7 540 aa27.98■■■□□ 2.07
SMPD1-204ENST00000530395 PPP2R1AP30153 589 aa27.98■■■□□ 2.07
SMPD1-204ENST00000530395 DDR1Q08345 913 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms