RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TMOD3Q9NYL9 352 aa14.44□□□□□ -0.1
CD44-227ENST00000528086 MRC1P22897 1456 aa14.43□□□□□ -0.1
CD44-227ENST00000528086 SMARCC1Q92922 1105 aaPredicted RBP14.42□□□□□ -0.1
CD44-227ENST00000528086 PHACTR3Q96KR7 559 aa14.42□□□□□ -0.1
CD44-227ENST00000528086 TJP1Q07157 1748 aa14.41□□□□□ -0.1
CD44-227ENST00000528086 NFATC2IPQ8NCF5 419 aa14.41□□□□□ -0.1
CD44-227ENST00000528086 RSPH6AQ9H0K4 717 aa14.41□□□□□ -0.1
CD44-227ENST00000528086 TFCP2L1Q9NZI6 479 aa14.41□□□□□ -0.1
CD44-227ENST00000528086 SIPA1L3O60292 1781 aaPredicted RBP14.41□□□□□ -0.1
CD44-227ENST00000528086 HSP90AB1P08238 724 aaKnown RBP14.4□□□□□ -0.1
CD44-227ENST00000528086 AKAP4Q5JQC9 854 aa14.4□□□□□ -0.1
CD44-227ENST00000528086 CICQ96RK0 1608 aaPredicted RBP14.4□□□□□ -0.1
CD44-227ENST00000528086 UTRNP46939 3433 aa14.39□□□□□ -0.11
CD44-227ENST00000528086 RNMTO43148 476 aaKnown RBP14.39□□□□□ -0.11
CD44-227ENST00000528086 UBR2Q8IWV8 1755 aa14.38□□□□□ -0.11
CD44-227ENST00000528086 KCPQ6ZWJ8 1503 aa14.38□□□□□ -0.11
CD44-227ENST00000528086 U2SURPO15042 1029 aaKnown RBP14.38□□□□□ -0.11
CD44-227ENST00000528086 CABP4P57796 275 aa14.38□□□□□ -0.11
CD44-227ENST00000528086 C1orf141Q5JVX7 400 aa14.38□□□□□ -0.11
CD44-227ENST00000528086 IL17REQ8NFR9 667 aa14.38□□□□□ -0.11
CD44-227ENST00000528086 SLC16A10Q8TF71 515 aa14.38□□□□□ -0.11
CD44-227ENST00000528086 FHDC1Q9C0D6 1143 aaPredicted RBP14.38□□□□□ -0.11
CD44-227ENST00000528086 ATP6V1AP38606 617 aa14.37□□□□□ -0.11
CD44-227ENST00000528086 DDX10Q13206 875 aaKnown RBP14.37□□□□□ -0.11
CD44-227ENST00000528086 SYT17Q9BSW7 474 aa14.37□□□□□ -0.11
CD44-227ENST00000528086 SLC52A2Q9HAB3 445 aa14.37□□□□□ -0.11
CD44-227ENST00000528086 GOLGB1Q14789 3259 aaKnown RBP14.36□□□□□ -0.11
CD44-227ENST00000528086 SLC39A6Q13433 755 aa14.36□□□□□ -0.11
CD44-227ENST00000528086 MSL1Q68DK7 614 aa14.36□□□□□ -0.11
CD44-227ENST00000528086 ARXQ96QS3 562 aa14.36□□□□□ -0.11
CD44-227ENST00000528086 PPP1R1BQ9UD71 204 aaPredicted RBP14.36□□□□□ -0.11
CD44-227ENST00000528086 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.35□□□□□ -0.11
CD44-227ENST00000528086 PRKAR2BP31323 418 aa14.35□□□□□ -0.11
CD44-227ENST00000528086 C4AP0C0L4 1744 aa14.35□□□□□ -0.11
CD44-227ENST00000528086 DLG5Q8TDM6 1919 aa14.35□□□□□ -0.11
CD44-227ENST00000528086 MAP3K5Q99683 1374 aa14.34□□□□□ -0.11
CD44-227ENST00000528086 PTCD1O75127 700 aaKnown RBP14.34□□□□□ -0.11
CD44-227ENST00000528086 RBM42Q9BTD8 480 aaKnown RBP14.34□□□□□ -0.11
CD44-227ENST00000528086 CEMIPQ8WUJ3 1361 aa14.34□□□□□ -0.11
CD44-227ENST00000528086 PHF14O94880 888 aa14.33□□□□□ -0.12
CD44-227ENST00000528086 GNPATO15228 680 aa14.32□□□□□ -0.12
CD44-227ENST00000528086 U2AF1L5P0DN76 240 aaPredicted RBP14.32□□□□□ -0.12
CD44-227ENST00000528086 SSFA2P28290 1259 aa14.32□□□□□ -0.12
CD44-227ENST00000528086 U2AF1Q01081 240 aaKnown RBP eCLIP14.32□□□□□ -0.12
CD44-227ENST00000528086 RC3H1Q5TC82 1133 aaKnown RBP14.32□□□□□ -0.12
CD44-227ENST00000528086 INTS5Q6P9B9 1019 aaKnown RBP14.32□□□□□ -0.12
CD44-227ENST00000528086 AK7Q96M32 723 aa14.32□□□□□ -0.12
CD44-227ENST00000528086 CFAP53Q96M91 514 aa14.32□□□□□ -0.12
CD44-227ENST00000528086 PLEKHF1Q96S99 279 aa14.32□□□□□ -0.12
CD44-227ENST00000528086 CNTNAP4Q9C0A0 1308 aa14.32□□□□□ -0.12
CD44-227ENST00000528086 KCNQ3O43525 872 aa14.31□□□□□ -0.12
CD44-227ENST00000528086 DNAJC10Q8IXB1 793 aa14.31□□□□□ -0.12
CD44-227ENST00000528086 NLGN2Q8NFZ4 835 aa14.31□□□□□ -0.12
CD44-227ENST00000528086 GNAT3A8MTJ3 354 aa14.3□□□□□ -0.12
CD44-227ENST00000528086 MSH5O43196 834 aa14.3□□□□□ -0.12
CD44-227ENST00000528086 FCHSD2O94868 740 aa14.3□□□□□ -0.12
CD44-227ENST00000528086 ARHGEF1Q92888 912 aaKnown RBP14.3□□□□□ -0.12
CD44-227ENST00000528086 RPS6KA4O75676 772 aa14.29□□□□□ -0.12
CD44-227ENST00000528086 CRKLP46109 303 aaKnown RBP14.29□□□□□ -0.12
CD44-227ENST00000528086 FLAD1Q8NFF5 587 aa14.29□□□□□ -0.12
CD44-227ENST00000528086 GAS2L2Q8NHY3 880 aa14.29□□□□□ -0.12
CD44-227ENST00000528086 KIAA1551Q9HCM1 1747 aa14.29□□□□□ -0.12
CD44-227ENST00000528086 CYP19A1P11511 503 aaPredicted RBP14.28□□□□□ -0.12
CD44-227ENST00000528086 DCTN1Q14203 1278 aa14.28□□□□□ -0.12
CD44-227ENST00000528086 ZNF496Q96IT1 587 aaPredicted RBP14.28□□□□□ -0.12
CD44-227ENST00000528086 NUDCQ9Y266 331 aa14.28□□□□□ -0.12
CD44-227ENST00000528086 RALBP1Q15311 655 aa14.27□□□□□ -0.13
CD44-227ENST00000528086 MCM10Q7L590 875 aa14.27□□□□□ -0.13
CD44-227ENST00000528086 KIF13BQ9NQT8 1826 aa14.27□□□□□ -0.13
CD44-227ENST00000528086 GYS1P13807 737 aa14.26□□□□□ -0.13
CD44-227ENST00000528086 POLD1P28340 1107 aa14.26□□□□□ -0.13
CD44-227ENST00000528086 SRP68Q9UHB9 627 aaKnown RBP14.26□□□□□ -0.13
CD44-227ENST00000528086 RTCBQ9Y3I0 505 aaKnown RBP14.26□□□□□ -0.13
CD44-227ENST00000528086 SOS1Q07889 1333 aaPredicted RBP14.25□□□□□ -0.13
CD44-227ENST00000528086 ZNF790Q6PG37 636 aa14.25□□□□□ -0.13
CD44-227ENST00000528086 PRAMEF22A3QJZ6 481 aa14.24□□□□□ -0.13
CD44-227ENST00000528086 TRAPPC3LQ5T215 181 aa14.24□□□□□ -0.13
CD44-227ENST00000528086 ZBTB1Q9Y2K1 713 aa14.24□□□□□ -0.13
CD44-227ENST00000528086 HEG1Q9ULI3 1381 aa14.23□□□□□ -0.13
CD44-227ENST00000528086 YBX3P16989 372 aaKnown RBP eCLIP14.23□□□□□ -0.13
CD44-227ENST00000528086 ADRA2BP18089 450 aa14.23□□□□□ -0.13
CD44-227ENST00000528086 HMGB2P26583 209 aaKnown RBP14.23□□□□□ -0.13
CD44-227ENST00000528086 VSIG10Q8N0Z9 540 aa14.23□□□□□ -0.13
CD44-227ENST00000528086 PRKRIP1Q9H875 184 aaPredicted RBP14.23□□□□□ -0.13
CD44-227ENST00000528086 BCL2L12Q9HB09 334 aa14.23□□□□□ -0.13
CD44-227ENST00000528086 CCDC87Q9NVE4 849 aa14.23□□□□□ -0.13
CD44-227ENST00000528086 KDM3BQ7LBC6 1761 aa14.23□□□□□ -0.13
CD44-227ENST00000528086 MYBBP1AQ9BQG0 1328 aaKnown RBP14.22□□□□□ -0.13
CD44-227ENST00000528086 USP42Q9H9J4 1324 aaKnown RBP14.22□□□□□ -0.13
CD44-227ENST00000528086 CHD4Q14839 1912 aa14.22□□□□□ -0.13
CD44-227ENST00000528086 MMP10P09238 476 aa14.22□□□□□ -0.13
CD44-227ENST00000528086 TEFQ10587 303 aa14.22□□□□□ -0.13
CD44-227ENST00000528086 FKBP8Q14318 412 aa14.22□□□□□ -0.13
CD44-227ENST00000528086 KLHL34Q8N239 644 aa14.22□□□□□ -0.13
CD44-227ENST00000528086 THUMPD2Q9BTF0 503 aaKnown RBP14.22□□□□□ -0.13
CD44-227ENST00000528086 N4BP2Q86UW6 1770 aaPredicted RBP14.22□□□□□ -0.13
CD44-227ENST00000528086 DDR1Q08345 913 aa14.21□□□□□ -0.13
CD44-227ENST00000528086 MIS18AQ9NYP9 233 aa14.21□□□□□ -0.13
CD44-227ENST00000528086 CD2APQ9Y5K6 639 aa14.21□□□□□ -0.13
CD44-227ENST00000528086 BRCA1P38398 1863 aaKnown RBP14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms