RNA–Protein interactions for RNA: ENST00000527836.5

SCN3B-204, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

TSL 4

Gene SCN3B, Length 566 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-204ENST00000527836 RBM42Q9BTD8 480 aaKnown RBP16.79■□□□□ 0.28
SCN3B-204ENST00000527836 IL13P35225 146 aa16.78■□□□□ 0.28
SCN3B-204ENST00000527836 COL24A1Q17RW2 1714 aa16.78■□□□□ 0.28
SCN3B-204ENST00000527836 CHD4Q14839 1912 aa16.77■□□□□ 0.28
SCN3B-204ENST00000527836 ATG3Q9NT62 314 aa16.77■□□□□ 0.28
SCN3B-204ENST00000527836 UBR3Q6ZT12 1888 aa16.76■□□□□ 0.27
SCN3B-204ENST00000527836 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.76■□□□□ 0.27
SCN3B-204ENST00000527836 GNPATO15228 680 aa16.76■□□□□ 0.27
SCN3B-204ENST00000527836 LINC00116Q8NCU8 138 aa16.76■□□□□ 0.27
SCN3B-204ENST00000527836 PER1O15534 1290 aaPredicted RBP16.75■□□□□ 0.27
SCN3B-204ENST00000527836 DIAPH1O60610 1272 aaKnown RBP16.75■□□□□ 0.27
SCN3B-204ENST00000527836 HMOX1P09601 288 aa16.75■□□□□ 0.27
SCN3B-204ENST00000527836 SSFA2P28290 1259 aa16.75■□□□□ 0.27
SCN3B-204ENST00000527836 ITPK1Q13572 414 aa16.74■□□□□ 0.27
SCN3B-204ENST00000527836 KDRP35968 1356 aa16.74■□□□□ 0.27
SCN3B-204ENST00000527836 KDM6AO15550 1401 aaPredicted RBP16.72■□□□□ 0.27
SCN3B-204ENST00000527836 PTCD1O75127 700 aaKnown RBP16.72■□□□□ 0.27
SCN3B-204ENST00000527836 AKAP4Q5JQC9 854 aa16.72■□□□□ 0.27
SCN3B-204ENST00000527836 SMIM5Q71RC9 77 aa16.72■□□□□ 0.27
SCN3B-204ENST00000527836 NFATC2IPQ8NCF5 419 aa16.72■□□□□ 0.27
SCN3B-204ENST00000527836 NLGN2Q8NFZ4 835 aa16.72■□□□□ 0.27
SCN3B-204ENST00000527836 RTCBQ9Y3I0 505 aaKnown RBP16.72■□□□□ 0.27
SCN3B-204ENST00000527836 U2SURPO15042 1029 aaKnown RBP16.71■□□□□ 0.27
SCN3B-204ENST00000527836 TRAPPC3LQ5T215 181 aa16.71■□□□□ 0.27
SCN3B-204ENST00000527836 SCN11AQ9UI33 1791 aa16.71■□□□□ 0.27
SCN3B-204ENST00000527836 NPC1L1Q9UHC9 1359 aa16.7■□□□□ 0.26
SCN3B-204ENST00000527836 AMIGO3Q86WK7 504 aa16.7■□□□□ 0.26
SCN3B-204ENST00000527836 VIRMAQ69YN4 1812 aaKnown RBP16.69■□□□□ 0.26
SCN3B-204ENST00000527836 CFAP53Q96M91 514 aa16.69■□□□□ 0.26
SCN3B-204ENST00000527836 CD2APQ9Y5K6 639 aa16.69■□□□□ 0.26
SCN3B-204ENST00000527836 GRIN3BO60391 1043 aa16.68■□□□□ 0.26
SCN3B-204ENST00000527836 ZNF831Q5JPB2 1677 aa16.68■□□□□ 0.26
SCN3B-204ENST00000527836 RFC4P35249 363 aa16.67■□□□□ 0.26
SCN3B-204ENST00000527836 CNTNAP4Q9C0A0 1308 aa16.67■□□□□ 0.26
SCN3B-204ENST00000527836 ADRA2BP18089 450 aa16.66■□□□□ 0.26
SCN3B-204ENST00000527836 COL5A3P25940 1745 aaPredicted RBP16.66■□□□□ 0.26
SCN3B-204ENST00000527836 MTHFSDQ2M296 383 aaKnown RBP16.66■□□□□ 0.26
SCN3B-204ENST00000527836 RC3H1Q5TC82 1133 aaKnown RBP16.66■□□□□ 0.26
SCN3B-204ENST00000527836 SLC4A9Q96Q91 983 aa16.66■□□□□ 0.26
SCN3B-204ENST00000527836 SLC52A2Q9HAB3 445 aa16.66■□□□□ 0.26
SCN3B-204ENST00000527836 NLGN1Q8N2Q7 840 aa16.65■□□□□ 0.26
SCN3B-204ENST00000527836 LGR6Q9HBX8 967 aa16.65■□□□□ 0.26
SCN3B-204ENST00000527836 UTRNP46939 3433 aa16.65■□□□□ 0.26
SCN3B-204ENST00000527836 RNMTO43148 476 aaKnown RBP16.64■□□□□ 0.25
SCN3B-204ENST00000527836 RPS6KA4O75676 772 aa16.64■□□□□ 0.25
SCN3B-204ENST00000527836 MMP10P09238 476 aa16.64■□□□□ 0.25
SCN3B-204ENST00000527836 ZNF784Q8NCA9 323 aaPredicted RBP16.64■□□□□ 0.25
SCN3B-204ENST00000527836 ARHGEF1Q92888 912 aaKnown RBP16.64■□□□□ 0.25
SCN3B-204ENST00000527836 NUDCQ9Y266 331 aa16.64■□□□□ 0.25
SCN3B-204ENST00000527836 CRKLP46109 303 aaKnown RBP16.63■□□□□ 0.25
SCN3B-204ENST00000527836 MYH14Q7Z406 1995 aaKnown RBP16.63■□□□□ 0.25
SCN3B-204ENST00000527836 YBX3P16989 372 aaKnown RBP eCLIP16.62■□□□□ 0.25
SCN3B-204ENST00000527836 GAS2L2Q8NHY3 880 aa16.62■□□□□ 0.25
SCN3B-204ENST00000527836 TEFQ10587 303 aa16.61■□□□□ 0.25
SCN3B-204ENST00000527836 SLC39A6Q13433 755 aa16.61■□□□□ 0.25
SCN3B-204ENST00000527836 TTC5Q8N0Z6 440 aa16.61■□□□□ 0.25
SCN3B-204ENST00000527836 WWC3Q9ULE0 1092 aa16.61■□□□□ 0.25
SCN3B-204ENST00000527836 PARP3Q9Y6F1 533 aa16.61■□□□□ 0.25
SCN3B-204ENST00000527836 GOLGB1Q14789 3259 aaKnown RBP16.6■□□□□ 0.25
SCN3B-204ENST00000527836 GNAT3A8MTJ3 354 aa16.6■□□□□ 0.25
SCN3B-204ENST00000527836 COL3A1P02461 1466 aaPredicted RBP16.6■□□□□ 0.25
SCN3B-204ENST00000527836 TJP1Q07157 1748 aa16.59■□□□□ 0.25
SCN3B-204ENST00000527836 DNAJC10Q8IXB1 793 aa16.59■□□□□ 0.25
SCN3B-204ENST00000527836 CCDC87Q9NVE4 849 aa16.59■□□□□ 0.25
SCN3B-204ENST00000527836 C4AP0C0L4 1744 aa16.59■□□□□ 0.25
SCN3B-204ENST00000527836 ZPR1O75312 459 aa16.58■□□□□ 0.24
SCN3B-204ENST00000527836 U2AF1L5P0DN76 240 aaPredicted RBP16.58■□□□□ 0.24
SCN3B-204ENST00000527836 GYS1P13807 737 aa16.58■□□□□ 0.24
SCN3B-204ENST00000527836 PPP2R1AP30153 589 aa16.58■□□□□ 0.24
SCN3B-204ENST00000527836 U2AF1Q01081 240 aaKnown RBP eCLIP16.58■□□□□ 0.24
SCN3B-204ENST00000527836 MRC1P22897 1456 aa16.58■□□□□ 0.24
SCN3B-204ENST00000527836 CICQ96RK0 1608 aaPredicted RBP16.58■□□□□ 0.24
SCN3B-204ENST00000527836 PRKAR2BP31323 418 aa16.57■□□□□ 0.24
SCN3B-204ENST00000527836 SRP68Q9UHB9 627 aaKnown RBP16.56■□□□□ 0.24
SCN3B-204ENST00000527836 STARD3NLO95772 234 aa16.55■□□□□ 0.24
SCN3B-204ENST00000527836 NEFMP07197 916 aa16.55■□□□□ 0.24
SCN3B-204ENST00000527836 INTS5Q6P9B9 1019 aaKnown RBP16.55■□□□□ 0.24
SCN3B-204ENST00000527836 RTF1Q92541 710 aaKnown RBP16.55■□□□□ 0.24
SCN3B-204ENST00000527836 ADAMTS7Q9UKP4 1686 aa16.55■□□□□ 0.24
SCN3B-204ENST00000527836 N4BP2Q86UW6 1770 aaPredicted RBP16.54■□□□□ 0.24
SCN3B-204ENST00000527836 USP42Q9H9J4 1324 aaKnown RBP16.54■□□□□ 0.24
SCN3B-204ENST00000527836 CYP19A1P11511 503 aaPredicted RBP16.54■□□□□ 0.24
SCN3B-204ENST00000527836 TGFB2P61812 414 aa16.54■□□□□ 0.24
SCN3B-204ENST00000527836 VSIG10Q8N0Z9 540 aa16.54■□□□□ 0.24
SCN3B-204ENST00000527836 CANXP27824 592 aaKnown RBP16.53■□□□□ 0.24
SCN3B-204ENST00000527836 FKBP8Q14318 412 aa16.53■□□□□ 0.24
SCN3B-204ENST00000527836 NPM2Q86SE8 214 aaKnown RBP16.53■□□□□ 0.24
SCN3B-204ENST00000527836 IL17REQ8NFR9 667 aa16.53■□□□□ 0.24
SCN3B-204ENST00000527836 RSPH6AQ9H0K4 717 aa16.53■□□□□ 0.24
SCN3B-204ENST00000527836 KIF13BQ9NQT8 1826 aa16.53■□□□□ 0.24
SCN3B-204ENST00000527836 KCPQ6ZWJ8 1503 aa16.52■□□□□ 0.24
SCN3B-204ENST00000527836 A0A0G2JLW4 131 aa16.52■□□□□ 0.24
SCN3B-204ENST00000527836 FCHSD2O94868 740 aa16.52■□□□□ 0.24
SCN3B-204ENST00000527836 USPL1Q5W0Q7 1092 aa16.52■□□□□ 0.24
SCN3B-204ENST00000527836 ZNF790Q6PG37 636 aa16.52■□□□□ 0.24
SCN3B-204ENST00000527836 PHACTR3Q96KR7 559 aa16.52■□□□□ 0.24
SCN3B-204ENST00000527836 TEX13AQ9BXU3 409 aaPredicted RBP16.52■□□□□ 0.24
SCN3B-204ENST00000527836 BCS1LQ9Y276 419 aa16.52■□□□□ 0.24
SCN3B-204ENST00000527836 ZNF330Q9Y3S2 320 aaPredicted RBP16.52■□□□□ 0.24
SCN3B-204ENST00000527836 UBR2Q8IWV8 1755 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms