RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 KDRP35968 1356 aa32.47■■■□□ 2.79
CPSF1-202ENST00000527827 ADCY9O60503 1353 aa32.45■■■□□ 2.79
CPSF1-202ENST00000527827 PCGF6Q9BYE7 350 aa32.45■■■□□ 2.79
CPSF1-202ENST00000527827 ZNF831Q5JPB2 1677 aa32.45■■■□□ 2.79
CPSF1-202ENST00000527827 SLC4A9Q96Q91 983 aa32.44■■■□□ 2.78
CPSF1-202ENST00000527827 PANK3Q9H999 370 aa32.44■■■□□ 2.78
CPSF1-202ENST00000527827 WWC3Q9ULE0 1092 aa32.44■■■□□ 2.78
CPSF1-202ENST00000527827 ERVV-2B6SEH9 535 aa32.43■■■□□ 2.78
CPSF1-202ENST00000527827 HSPA5P11021 654 aaKnown RBP32.42■■■□□ 2.78
CPSF1-202ENST00000527827 EIF4G2P78344 907 aaKnown RBP eCLIP32.42■■■□□ 2.78
CPSF1-202ENST00000527827 COL5A3P25940 1745 aaPredicted RBP32.41■■■□□ 2.78
CPSF1-202ENST00000527827 KIF13BQ9NQT8 1826 aa32.4■■■□□ 2.78
CPSF1-202ENST00000527827 DCAF5Q96JK2 942 aa32.4■■■□□ 2.78
CPSF1-202ENST00000527827 MMP10P09238 476 aa32.39■■■□□ 2.78
CPSF1-202ENST00000527827 PLEKHO1Q53GL0 409 aaPredicted RBP32.39■■■□□ 2.78
CPSF1-202ENST00000527827 KDM6AO15550 1401 aaPredicted RBP32.39■■■□□ 2.78
CPSF1-202ENST00000527827 KIAA1551Q9HCM1 1747 aa32.38■■■□□ 2.77
CPSF1-202ENST00000527827 HSP90AB1P08238 724 aaKnown RBP32.38■■■□□ 2.77
CPSF1-202ENST00000527827 RTCBQ9Y3I0 505 aaKnown RBP32.38■■■□□ 2.77
CPSF1-202ENST00000527827 RBM42Q9BTD8 480 aaKnown RBP32.37■■■□□ 2.77
CPSF1-202ENST00000527827 GPBP1L1Q9HC44 474 aaPredicted RBP32.37■■■□□ 2.77
CPSF1-202ENST00000527827 TRAPPC3LQ5T215 181 aa32.36■■■□□ 2.77
CPSF1-202ENST00000527827 ZNF530Q6P9A1 599 aaPredicted RBP32.36■■■□□ 2.77
CPSF1-202ENST00000527827 RC3H1Q5TC82 1133 aaKnown RBP32.35■■■□□ 2.77
CPSF1-202ENST00000527827 MYH14Q7Z406 1995 aaKnown RBP32.34■■■□□ 2.77
CPSF1-202ENST00000527827 CICQ96RK0 1608 aaPredicted RBP32.34■■■□□ 2.77
CPSF1-202ENST00000527827 AMOTQ4VCS5 1084 aa32.34■■■□□ 2.77
CPSF1-202ENST00000527827 AEBP1Q8IUX7 1158 aa32.34■■■□□ 2.77
CPSF1-202ENST00000527827 PXDNLA1KZ92 1463 aa32.34■■■□□ 2.77
CPSF1-202ENST00000527827 CNTNAP4Q9C0A0 1308 aa32.33■■■□□ 2.77
CPSF1-202ENST00000527827 N4BP2Q86UW6 1770 aaPredicted RBP32.33■■■□□ 2.77
CPSF1-202ENST00000527827 ZNF526Q8TF50 670 aaPredicted RBP32.33■■■□□ 2.77
CPSF1-202ENST00000527827 ARHGEF1Q92888 912 aaKnown RBP32.33■■■□□ 2.77
CPSF1-202ENST00000527827 CEP350Q5VT06 3117 aa32.32■■■□□ 2.76
CPSF1-202ENST00000527827 ADRA2BP18089 450 aa32.31■■■□□ 2.76
CPSF1-202ENST00000527827 CABP4P57796 275 aa32.31■■■□□ 2.76
CPSF1-202ENST00000527827 MORC1Q86VD1 984 aa32.31■■■□□ 2.76
CPSF1-202ENST00000527827 NLGN1Q8N2Q7 840 aa32.31■■■□□ 2.76
CPSF1-202ENST00000527827 RPS6KA4O75676 772 aa32.3■■■□□ 2.76
CPSF1-202ENST00000527827 C4AP0C0L4 1744 aa32.3■■■□□ 2.76
CPSF1-202ENST00000527827 C10orf71Q711Q0 1435 aa32.29■■■□□ 2.76
CPSF1-202ENST00000527827 GYS1P13807 737 aa32.28■■■□□ 2.76
CPSF1-202ENST00000527827 MTHFSP49914 203 aa32.28■■■□□ 2.76
CPSF1-202ENST00000527827 TGFB2P61812 414 aa32.27■■■□□ 2.76
CPSF1-202ENST00000527827 A0A0G2JLW4 131 aa32.25■■■□□ 2.75
CPSF1-202ENST00000527827 RFC4P35249 363 aa32.25■■■□□ 2.75
CPSF1-202ENST00000527827 C1orf141Q5JVX7 400 aa32.25■■■□□ 2.75
CPSF1-202ENST00000527827 SULT6B1Q6IMI4 303 aa32.25■■■□□ 2.75
CPSF1-202ENST00000527827 PTCD1O75127 700 aaKnown RBP32.24■■■□□ 2.75
CPSF1-202ENST00000527827 NFATC2IPQ8NCF5 419 aa32.24■■■□□ 2.75
CPSF1-202ENST00000527827 SCN11AQ9UI33 1791 aa32.24■■■□□ 2.75
CPSF1-202ENST00000527827 TJP1Q07157 1748 aa32.23■■■□□ 2.75
CPSF1-202ENST00000527827 BRCA1P38398 1863 aaKnown RBP32.23■■■□□ 2.75
CPSF1-202ENST00000527827 IL13P35225 146 aa32.23■■■□□ 2.75
CPSF1-202ENST00000527827 CCDC87Q9NVE4 849 aa32.22■■■□□ 2.75
CPSF1-202ENST00000527827 BCS1LQ9Y276 419 aa32.21■■■□□ 2.75
CPSF1-202ENST00000527827 KNSTRNQ9Y448 316 aa32.21■■■□□ 2.75
CPSF1-202ENST00000527827 DPEP1P16444 411 aa32.2■■■□□ 2.75
CPSF1-202ENST00000527827 CRKLP46109 303 aaKnown RBP32.2■■■□□ 2.75
CPSF1-202ENST00000527827 KIF3CO14782 793 aa32.19■■■□□ 2.74
CPSF1-202ENST00000527827 PARP3Q9Y6F1 533 aa32.19■■■□□ 2.74
CPSF1-202ENST00000527827 HSPA6P17066 643 aa32.18■■■□□ 2.74
CPSF1-202ENST00000527827 AMER1Q5JTC6 1135 aaPredicted RBP32.16■■■□□ 2.74
CPSF1-202ENST00000527827 SRP68Q9UHB9 627 aaKnown RBP32.16■■■□□ 2.74
CPSF1-202ENST00000527827 ADAMTS7Q9UKP4 1686 aa32.15■■■□□ 2.74
CPSF1-202ENST00000527827 KCNA3P22001 575 aa32.15■■■□□ 2.74
CPSF1-202ENST00000527827 USP42Q9H9J4 1324 aaKnown RBP32.14■■■□□ 2.74
CPSF1-202ENST00000527827 FKBP8Q14318 412 aa32.13■■■□□ 2.73
CPSF1-202ENST00000527827 ARFGEF1Q9Y6D6 1849 aa32.13■■■□□ 2.73
CPSF1-202ENST00000527827 VIRMAQ69YN4 1812 aaKnown RBP32.12■■■□□ 2.73
CPSF1-202ENST00000527827 FCHSD2O94868 740 aa32.12■■■□□ 2.73
CPSF1-202ENST00000527827 AKAP4Q5JQC9 854 aa32.12■■■□□ 2.73
CPSF1-202ENST00000527827 INTS5Q6P9B9 1019 aaKnown RBP32.12■■■□□ 2.73
CPSF1-202ENST00000527827 ARHGAP27Q6ZUM4 889 aa32.12■■■□□ 2.73
CPSF1-202ENST00000527827 DDR1Q08345 913 aa32.11■■■□□ 2.73
CPSF1-202ENST00000527827 CCER1Q8TC90 406 aaPredicted RBP32.11■■■□□ 2.73
CPSF1-202ENST00000527827 LGR6Q9HBX8 967 aa32.11■■■□□ 2.73
CPSF1-202ENST00000527827 SLC52A2Q9HAB3 445 aa32.1■■■□□ 2.73
CPSF1-202ENST00000527827 DNAJC10Q8IXB1 793 aa32.08■■■□□ 2.73
CPSF1-202ENST00000527827 MRC1P22897 1456 aa32.08■■■□□ 2.73
CPSF1-202ENST00000527827 KIF7Q2M1P5 1343 aa32.07■■■□□ 2.72
CPSF1-202ENST00000527827 RNMTO43148 476 aaKnown RBP32.06■■■□□ 2.72
CPSF1-202ENST00000527827 HMOX1P09601 288 aa32.05■■■□□ 2.72
CPSF1-202ENST00000527827 PIM2Q9P1W9 311 aa32.05■■■□□ 2.72
CPSF1-202ENST00000527827 TM4SF1P30408 202 aa32.04■■■□□ 2.72
CPSF1-202ENST00000527827 POLRMTO00411 1230 aaKnown RBP32.03■■■□□ 2.72
CPSF1-202ENST00000527827 SLC39A6Q13433 755 aa32.03■■■□□ 2.72
CPSF1-202ENST00000527827 KCPQ6ZWJ8 1503 aa32.03■■■□□ 2.72
CPSF1-202ENST00000527827 SOS1Q07889 1333 aaPredicted RBP32.02■■■□□ 2.72
CPSF1-202ENST00000527827 CYP19A1P11511 503 aaPredicted RBP32.01■■■□□ 2.71
CPSF1-202ENST00000527827 USPL1Q5W0Q7 1092 aa32.01■■■□□ 2.71
CPSF1-202ENST00000527827 PER1O15534 1290 aaPredicted RBP32■■■□□ 2.71
CPSF1-202ENST00000527827 CHRNA5P30532 468 aa32■■■□□ 2.71
CPSF1-202ENST00000527827 MTHFSDQ2M296 383 aaKnown RBP32■■■□□ 2.71
CPSF1-202ENST00000527827 DALRD3Q5D0E6 543 aaKnown RBP32■■■□□ 2.71
CPSF1-202ENST00000527827 IFFO2Q5TF58 517 aa32■■■□□ 2.71
CPSF1-202ENST00000527827 C9orf131Q5VYM1 1079 aa32■■■□□ 2.71
CPSF1-202ENST00000527827 NMRK2Q9NPI5 230 aa32■■■□□ 2.71
CPSF1-202ENST00000527827 ZPR1O75312 459 aa31.99■■■□□ 2.71
CPSF1-202ENST00000527827 TOMM70O94826 608 aa31.99■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms