RNA–Protein interactions for RNA: ENST00000527644.1

TSPAN4-217, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 968 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-217ENST00000527644 ATP6V1AP38606 617 aa35.29■■■■□ 3.24
TSPAN4-217ENST00000527644 LGR6Q9HBX8 967 aa35.28■■■■□ 3.24
TSPAN4-217ENST00000527644 RNMTO43148 476 aaKnown RBP35.27■■■■□ 3.24
TSPAN4-217ENST00000527644 U2AF1L5P0DN76 240 aaPredicted RBP35.27■■■■□ 3.24
TSPAN4-217ENST00000527644 U2AF1Q01081 240 aaKnown RBP eCLIP35.27■■■■□ 3.24
TSPAN4-217ENST00000527644 GAS2L2Q8NHY3 880 aa35.27■■■■□ 3.24
TSPAN4-217ENST00000527644 RSPH6AQ9H0K4 717 aa35.27■■■■□ 3.24
TSPAN4-217ENST00000527644 RALBP1Q15311 655 aa35.26■■■■□ 3.24
TSPAN4-217ENST00000527644 AK7Q96M32 723 aa35.26■■■■□ 3.24
TSPAN4-217ENST00000527644 C4BP0C0L5 1744 aa35.26■■■■□ 3.23
TSPAN4-217ENST00000527644 PRKAR2BP31323 418 aa35.25■■■■□ 3.23
TSPAN4-217ENST00000527644 LINC00116Q8NCU8 138 aa35.25■■■■□ 3.23
TSPAN4-217ENST00000527644 FLAD1Q8NFF5 587 aa35.25■■■■□ 3.23
TSPAN4-217ENST00000527644 SGIP1Q9BQI5 828 aa35.25■■■■□ 3.23
TSPAN4-217ENST00000527644 SLC52A2Q9HAB3 445 aa35.25■■■■□ 3.23
TSPAN4-217ENST00000527644 ITPK1Q13572 414 aa35.24■■■■□ 3.23
TSPAN4-217ENST00000527644 COL23A1Q86Y22 540 aaPredicted RBP35.24■■■■□ 3.23
TSPAN4-217ENST00000527644 RBM42Q9BTD8 480 aaKnown RBP35.24■■■■□ 3.23
TSPAN4-217ENST00000527644 FCHSD2O94868 740 aa35.23■■■■□ 3.23
TSPAN4-217ENST00000527644 MSH5O43196 834 aa35.22■■■■□ 3.23
TSPAN4-217ENST00000527644 SLC4A9Q96Q91 983 aa35.21■■■■□ 3.23
TSPAN4-217ENST00000527644 ZNF831Q5JPB2 1677 aa35.21■■■■□ 3.23
TSPAN4-217ENST00000527644 PHACTR3Q96KR7 559 aa35.2■■■■□ 3.23
TSPAN4-217ENST00000527644 MRC1P22897 1456 aa35.2■■■■□ 3.23
TSPAN4-217ENST00000527644 ADAMTS7Q9UKP4 1686 aa35.2■■■■□ 3.23
TSPAN4-217ENST00000527644 GNAT3A8MTJ3 354 aa35.19■■■■□ 3.22
TSPAN4-217ENST00000527644 MAP3K5Q99683 1374 aa35.19■■■■□ 3.22
TSPAN4-217ENST00000527644 PTCD1O75127 700 aaKnown RBP35.16■■■■□ 3.22
TSPAN4-217ENST00000527644 POLD1P28340 1107 aa35.16■■■■□ 3.22
TSPAN4-217ENST00000527644 ARXQ96QS3 562 aa35.16■■■■□ 3.22
TSPAN4-217ENST00000527644 VIRMAQ69YN4 1812 aaKnown RBP35.16■■■■□ 3.22
TSPAN4-217ENST00000527644 SSFA2P28290 1259 aa35.14■■■■□ 3.22
TSPAN4-217ENST00000527644 UBR3Q6ZT12 1888 aa35.14■■■■□ 3.22
TSPAN4-217ENST00000527644 COL24A1Q17RW2 1714 aa35.13■■■■□ 3.21
TSPAN4-217ENST00000527644 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP35.13■■■■□ 3.21
TSPAN4-217ENST00000527644 GNPATO15228 680 aa35.13■■■■□ 3.21
TSPAN4-217ENST00000527644 AMIGO3Q86WK7 504 aa35.13■■■■□ 3.21
TSPAN4-217ENST00000527644 IL17REQ8NFR9 667 aa35.13■■■■□ 3.21
TSPAN4-217ENST00000527644 RC3H1Q5TC82 1133 aaKnown RBP35.12■■■■□ 3.21
TSPAN4-217ENST00000527644 PHF14O94880 888 aa35.11■■■■□ 3.21
TSPAN4-217ENST00000527644 TEFQ10587 303 aa35.09■■■■□ 3.21
TSPAN4-217ENST00000527644 SLC39A6Q13433 755 aa35.09■■■■□ 3.21
TSPAN4-217ENST00000527644 MYBBP1AQ9BQG0 1328 aaKnown RBP35.08■■■■□ 3.21
TSPAN4-217ENST00000527644 CNTNAP4Q9C0A0 1308 aa35.08■■■■□ 3.21
TSPAN4-217ENST00000527644 FHDC1Q9C0D6 1143 aaPredicted RBP35.08■■■■□ 3.21
TSPAN4-217ENST00000527644 COL5A3P25940 1745 aaPredicted RBP35.07■■■■□ 3.2
TSPAN4-217ENST00000527644 SMIM5Q71RC9 77 aa35.07■■■■□ 3.2
TSPAN4-217ENST00000527644 RTCBQ9Y3I0 505 aaKnown RBP35.07■■■■□ 3.2
TSPAN4-217ENST00000527644 CEMIPQ8WUJ3 1361 aa35.06■■■■□ 3.2
TSPAN4-217ENST00000527644 NEFMP07197 916 aa35.06■■■■□ 3.2
TSPAN4-217ENST00000527644 SYT17Q9BSW7 474 aa35.06■■■■□ 3.2
TSPAN4-217ENST00000527644 MSL1Q68DK7 614 aa35.04■■■■□ 3.2
TSPAN4-217ENST00000527644 PNNQ9H307 717 aaKnown RBP35.04■■■■□ 3.2
TSPAN4-217ENST00000527644 CICQ96RK0 1608 aaPredicted RBP35.03■■■■□ 3.2
TSPAN4-217ENST00000527644 TRAPPC3LQ5T215 181 aa35.03■■■■□ 3.2
TSPAN4-217ENST00000527644 RTF1Q92541 710 aaKnown RBP35.03■■■■□ 3.2
TSPAN4-217ENST00000527644 RPS6KA4O75676 772 aa35.02■■■■□ 3.2
TSPAN4-217ENST00000527644 ADRA2BP18089 450 aa35.02■■■■□ 3.2
TSPAN4-217ENST00000527644 TTC5Q8N0Z6 440 aa35.02■■■■□ 3.2
TSPAN4-217ENST00000527644 HTATSF1O43719 755 aaKnown RBP35.01■■■■□ 3.2
TSPAN4-217ENST00000527644 VSIG10Q8N0Z9 540 aa35.01■■■■□ 3.2
TSPAN4-217ENST00000527644 PLEKHF1Q96S99 279 aa35.01■■■■□ 3.2
TSPAN4-217ENST00000527644 KCPQ6ZWJ8 1503 aa35.01■■■■□ 3.19
TSPAN4-217ENST00000527644 TJP1Q07157 1748 aa35.01■■■■□ 3.19
TSPAN4-217ENST00000527644 CRKLP46109 303 aaKnown RBP35■■■■□ 3.19
TSPAN4-217ENST00000527644 DNAJC10Q8IXB1 793 aa34.99■■■■□ 3.19
TSPAN4-217ENST00000527644 PRKRIP1Q9H875 184 aaPredicted RBP34.99■■■■□ 3.19
TSPAN4-217ENST00000527644 MYH14Q7Z406 1995 aaKnown RBP34.98■■■■□ 3.19
TSPAN4-217ENST00000527644 DCAF8L1A6NGE4 600 aa34.98■■■■□ 3.19
TSPAN4-217ENST00000527644 ZNF790Q6PG37 636 aa34.98■■■■□ 3.19
TSPAN4-217ENST00000527644 SIPA1L3O60292 1781 aaPredicted RBP34.97■■■■□ 3.19
TSPAN4-217ENST00000527644 MCM10Q7L590 875 aa34.96■■■■□ 3.19
TSPAN4-217ENST00000527644 ARHGEF1Q92888 912 aaKnown RBP34.96■■■■□ 3.19
TSPAN4-217ENST00000527644 UBR2Q8IWV8 1755 aa34.95■■■■□ 3.19
TSPAN4-217ENST00000527644 ZNF316A6NFI3 1004 aaPredicted RBP34.94■■■■□ 3.18
TSPAN4-217ENST00000527644 INTS5Q6P9B9 1019 aaKnown RBP34.94■■■■□ 3.18
TSPAN4-217ENST00000527644 MAPK8IP3Q9UPT6 1336 aa34.93■■■■□ 3.18
TSPAN4-217ENST00000527644 BTBD11A6QL63 1104 aa34.93■■■■□ 3.18
TSPAN4-217ENST00000527644 CYP19A1P11511 503 aaPredicted RBP34.93■■■■□ 3.18
TSPAN4-217ENST00000527644 KLHL34Q8N239 644 aa34.93■■■■□ 3.18
TSPAN4-217ENST00000527644 RFC4P35249 363 aa34.92■■■■□ 3.18
TSPAN4-217ENST00000527644 ZNF496Q96IT1 587 aaPredicted RBP34.92■■■■□ 3.18
TSPAN4-217ENST00000527644 CCDC87Q9NVE4 849 aa34.92■■■■□ 3.18
TSPAN4-217ENST00000527644 DCTN1Q14203 1278 aa34.91■■■■□ 3.18
TSPAN4-217ENST00000527644 NFE2L2Q16236 605 aa34.91■■■■□ 3.18
TSPAN4-217ENST00000527644 FMNL2Q96PY5 1086 aa34.89■■■■□ 3.18
TSPAN4-217ENST00000527644 HEG1Q9ULI3 1381 aa34.88■■■■□ 3.17
TSPAN4-217ENST00000527644 NLGN1Q8N2Q7 840 aa34.88■■■■□ 3.17
TSPAN4-217ENST00000527644 TEX13AQ9BXU3 409 aaPredicted RBP34.88■■■■□ 3.17
TSPAN4-217ENST00000527644 STARD3NLO95772 234 aa34.87■■■■□ 3.17
TSPAN4-217ENST00000527644 KCNQ3O43525 872 aa34.85■■■■□ 3.17
TSPAN4-217ENST00000527644 SOS1Q07889 1333 aaPredicted RBP34.84■■■■□ 3.17
TSPAN4-217ENST00000527644 GYS1P13807 737 aa34.84■■■■□ 3.17
TSPAN4-217ENST00000527644 WDR43Q15061 677 aaKnown RBP eCLIP34.84■■■■□ 3.17
TSPAN4-217ENST00000527644 TAF7Q15545 349 aaPredicted RBP34.84■■■■□ 3.17
TSPAN4-217ENST00000527644 CD2APQ9Y5K6 639 aa34.84■■■■□ 3.17
TSPAN4-217ENST00000527644 DLG5Q8TDM6 1919 aa34.84■■■■□ 3.17
TSPAN4-217ENST00000527644 ZBTB1Q9Y2K1 713 aa34.83■■■■□ 3.17
TSPAN4-217ENST00000527644 C4AP0C0L4 1744 aa34.82■■■■□ 3.16
TSPAN4-217ENST00000527644 MMP10P09238 476 aa34.82■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms