RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PHF8Q9UPP1 1060 aa26.14■■□□□ 1.77
VPS28-205ENST00000526204 ERC2O15083 957 aa26.12■■□□□ 1.77
VPS28-205ENST00000526204 ATP8B2P98198 1209 aa26.12■■□□□ 1.77
VPS28-205ENST00000526204 CLEC17AQ6ZS10 378 aa26.12■■□□□ 1.77
VPS28-205ENST00000526204 FAM43AQ8N2R8 423 aa26.12■■□□□ 1.77
VPS28-205ENST00000526204 LRRCC1Q9C099 1032 aa26.12■■□□□ 1.77
VPS28-205ENST00000526204 PXDNLA1KZ92 1463 aa26.11■■□□□ 1.77
VPS28-205ENST00000526204 LTV1Q96GA3 475 aaPredicted RBP26.11■■□□□ 1.77
VPS28-205ENST00000526204 FOXD4L1Q9NU39 408 aa26.11■■□□□ 1.77
VPS28-205ENST00000526204 FAM208AQ9UK61 1670 aaKnown RBP26.11■■□□□ 1.77
VPS28-205ENST00000526204 IP6K1Q92551 441 aa26.11■■□□□ 1.77
VPS28-205ENST00000526204 ST18O60284 1047 aa26.1■■□□□ 1.77
VPS28-205ENST00000526204 CHMP4AQ9BY43 222 aa26.1■■□□□ 1.77
VPS28-205ENST00000526204 XRCC6P12956 609 aaKnown RBP eCLIP26.09■■□□□ 1.777e-6■□□□□ 8.8
VPS28-205ENST00000526204 C14orf37Q86TY3 774 aa26.09■■□□□ 1.77
VPS28-205ENST00000526204 MRE11P49959 708 aa26.09■■□□□ 1.77
VPS28-205ENST00000526204 EXOC6BQ9Y2D4 811 aa26.09■■□□□ 1.77
VPS28-205ENST00000526204 GOLGA6L22H0YM25 854 aa26.08■■□□□ 1.77
VPS28-205ENST00000526204 SALL3Q9BXA9 1300 aa26.08■■□□□ 1.77
VPS28-205ENST00000526204 NECTIN2Q92692 538 aa26.07■■□□□ 1.76
VPS28-205ENST00000526204 CACNA1FO60840 1977 aa26.07■■□□□ 1.76
VPS28-205ENST00000526204 CEMIPQ8WUJ3 1361 aa26.07■■□□□ 1.76
VPS28-205ENST00000526204 IBTKQ9P2D0 1353 aaPredicted RBP26.07■■□□□ 1.76
VPS28-205ENST00000526204 HDGFL1Q5TGJ6 251 aa26.06■■□□□ 1.76
VPS28-205ENST00000526204 ANKLE2Q86XL3 938 aa26.06■■□□□ 1.76
VPS28-205ENST00000526204 SRCIN1Q9C0H9 1055 aa26.06■■□□□ 1.76
VPS28-205ENST00000526204 CWC22Q9HCG8 908 aaKnown RBP26.06■■□□□ 1.76
VPS28-205ENST00000526204 NUCB2P80303 420 aa26.06■■□□□ 1.76
VPS28-205ENST00000526204 PNMA6EA0A0J9YXQ4 647 aa26.05■■□□□ 1.76
VPS28-205ENST00000526204 KCNH5Q8NCM2 988 aa26.05■■□□□ 1.76
VPS28-205ENST00000526204 HOXB7P09629 217 aa26.05■■□□□ 1.76
VPS28-205ENST00000526204 MX1P20591 662 aa26.05■■□□□ 1.76
VPS28-205ENST00000526204 UBTFL1P0CB47 393 aaPredicted RBP26.04■■□□□ 1.76
VPS28-205ENST00000526204 SSFA2P28290 1259 aa26.04■■□□□ 1.76
VPS28-205ENST00000526204 USP44Q9H0E7 712 aa26.04■■□□□ 1.76
VPS28-205ENST00000526204 STAP2Q9UGK3 403 aa26.03■■□□□ 1.76
VPS28-205ENST00000526204 LRRFIP2Q9Y608 721 aaKnown RBP26.03■■□□□ 1.76
VPS28-205ENST00000526204 USHBP1Q8N6Y0 703 aa26.03■■□□□ 1.76
VPS28-205ENST00000526204 N4BP2Q86UW6 1770 aaPredicted RBP26.01■■□□□ 1.76
VPS28-205ENST00000526204 NFAT5O94916 1531 aa26.01■■□□□ 1.75
VPS28-205ENST00000526204 AOX1Q06278 1338 aa26.01■■□□□ 1.75
VPS28-205ENST00000526204 PSME1Q06323 249 aa26.01■■□□□ 1.75
VPS28-205ENST00000526204 NBPF6Q5VWK0 638 aa26■■□□□ 1.75
VPS28-205ENST00000526204 SSH3Q8TE77 659 aa26■■□□□ 1.75
VPS28-205ENST00000526204 NBPF4Q96M43 638 aa26■■□□□ 1.75
VPS28-205ENST00000526204 ARXQ96QS3 562 aa26■■□□□ 1.75
VPS28-205ENST00000526204 ESYT1Q9BSJ8 1104 aa26■■□□□ 1.75
VPS28-205ENST00000526204 CHD2O14647 1828 aaKnown RBP25.99■■□□□ 1.75
VPS28-205ENST00000526204 BAG4O95429 457 aaKnown RBP25.99■■□□□ 1.75
VPS28-205ENST00000526204 GRPEL1Q9HAV7 217 aa25.99■■□□□ 1.75
VPS28-205ENST00000526204 RAB11FIP3O75154 756 aa25.99■■□□□ 1.75
VPS28-205ENST00000526204 EIF4A1P60842 406 aaKnown RBP25.99■■□□□ 1.75
VPS28-205ENST00000526204 LTN1O94822 1766 aa25.98■■□□□ 1.75
VPS28-205ENST00000526204 MED1Q15648 1581 aaPredicted RBP25.98■■□□□ 1.75
VPS28-205ENST00000526204 CYP2E1P05181 493 aaPredicted RBP25.97■■□□□ 1.75
VPS28-205ENST00000526204 MCCP23508 829 aa25.97■■□□□ 1.75
VPS28-205ENST00000526204 PHAXQ9H814 394 aaKnown RBP25.97■■□□□ 1.75
VPS28-205ENST00000526204 ADGRL3Q9HAR2 1447 aa25.97■■□□□ 1.75
VPS28-205ENST00000526204 MCM2P49736 904 aa25.97■■□□□ 1.75
VPS28-205ENST00000526204 ESCO1Q5FWF5 840 aa25.97■■□□□ 1.75
VPS28-205ENST00000526204 AKAP4Q5JQC9 854 aa25.96■■□□□ 1.75
VPS28-205ENST00000526204 CHMLP26374 656 aa25.95■■□□□ 1.74
VPS28-205ENST00000526204 ANAPC15P60006 121 aa25.95■■□□□ 1.74
VPS28-205ENST00000526204 PLEKHO1Q53GL0 409 aaPredicted RBP25.95■■□□□ 1.74
VPS28-205ENST00000526204 TSHZ3Q63HK5 1081 aa25.95■■□□□ 1.74
VPS28-205ENST00000526204 TRIM6-TRIM34B2RNG4 842 aa25.94■■□□□ 1.74
VPS28-205ENST00000526204 EPB41L2O43491 1005 aaKnown RBP25.94■■□□□ 1.74
VPS28-205ENST00000526204 POLA2Q14181 598 aa25.94■■□□□ 1.74
VPS28-205ENST00000526204 KLHL40Q2TBA0 621 aa25.94■■□□□ 1.74
VPS28-205ENST00000526204 AMOTQ4VCS5 1084 aa25.94■■□□□ 1.74
VPS28-205ENST00000526204 LGR6Q9HBX8 967 aa25.94■■□□□ 1.74
VPS28-205ENST00000526204 TEFQ10587 303 aa25.94■■□□□ 1.74
VPS28-205ENST00000526204 PANK2Q9BZ23 570 aa25.94■■□□□ 1.74
VPS28-205ENST00000526204 PHRF1Q9P1Y6 1649 aaKnown RBP25.93■■□□□ 1.74
VPS28-205ENST00000526204 EIF2S2P20042 333 aaKnown RBP25.93■■□□□ 1.74
VPS28-205ENST00000526204 RILPL2Q969X0 211 aa25.93■■□□□ 1.74
VPS28-205ENST00000526204 ZNF530Q6P9A1 599 aaPredicted RBP25.91■■□□□ 1.74
VPS28-205ENST00000526204 PPP1R42Q7Z4L9 355 aa25.91■■□□□ 1.74
VPS28-205ENST00000526204 DNAAF4Q8WXU2 420 aa25.91■■□□□ 1.74
VPS28-205ENST00000526204 BTBD11A6QL63 1104 aa25.91■■□□□ 1.74
VPS28-205ENST00000526204 NEK4P51957 841 aa25.91■■□□□ 1.74
VPS28-205ENST00000526204 IL17RAQ96F46 866 aa25.91■■□□□ 1.74
VPS28-205ENST00000526204 CHPF2Q9P2E5 772 aa25.91■■□□□ 1.74
VPS28-205ENST00000526204 DDX49Q9Y6V7 483 aaKnown RBP25.91■■□□□ 1.74
VPS28-205ENST00000526204 TUBGCP6Q96RT7 1819 aa25.9■■□□□ 1.74
VPS28-205ENST00000526204 SURF6O75683 361 aaKnown RBP25.9■■□□□ 1.74
VPS28-205ENST00000526204 BEND3Q5T5X7 828 aa25.9■■□□□ 1.74
VPS28-205ENST00000526204 NCAPD2Q15021 1401 aa25.89■■□□□ 1.74
VPS28-205ENST00000526204 ADAMTSL3P82987 1691 aa25.89■■□□□ 1.74
VPS28-205ENST00000526204 HSP90AB4PQ58FF6 505 aa25.89■■□□□ 1.74
VPS28-205ENST00000526204 KIF1BPQ96EK5 621 aa25.89■■□□□ 1.74
VPS28-205ENST00000526204 ANO2Q9NQ90 1003 aa25.89■■□□□ 1.74
VPS28-205ENST00000526204 RBM33Q96EV2 1170 aaKnown RBP25.88■■□□□ 1.73
VPS28-205ENST00000526204 ZNF142P52746 1687 aaPredicted RBP25.88■■□□□ 1.73
VPS28-205ENST00000526204 KDM3BQ7LBC6 1761 aa25.88■■□□□ 1.73
VPS28-205ENST00000526204 ZBTB7CA1YPR0 619 aa25.88■■□□□ 1.73
VPS28-205ENST00000526204 PI4KAP2A4QPH2 592 aa25.88■■□□□ 1.73
VPS28-205ENST00000526204 MCTP1Q6DN14 999 aa25.88■■□□□ 1.73
VPS28-205ENST00000526204 ARHGEF25Q86VW2 580 aa25.88■■□□□ 1.73
VPS28-205ENST00000526204 ZGPATQ8N5A5 531 aaKnown RBP25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms