RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.29□□□□□ -1.24
CD44-218ENST00000525469 SLC52A1Q9NWF4 448 aa7.29□□□□□ -1.24
CD44-218ENST00000525469 DCCP43146 1447 aa7.28□□□□□ -1.24
CD44-218ENST00000525469 DUOX2Q9NRD8 1548 aa7.28□□□□□ -1.24
CD44-218ENST00000525469 SENP3-EIF4A1A0A087X0R7 540 aa7.28□□□□□ -1.24
CD44-218ENST00000525469 BAG6P46379 1132 aa7.28□□□□□ -1.24
CD44-218ENST00000525469 MSS51Q4VC12 460 aa7.28□□□□□ -1.24
CD44-218ENST00000525469 PPARGC1BQ86YN6 1023 aaKnown RBP7.28□□□□□ -1.24
CD44-218ENST00000525469 DDX17Q92841 729 aaKnown RBP7.28□□□□□ -1.24
CD44-218ENST00000525469 GJD4Q96KN9 370 aaPredicted RBP7.28□□□□□ -1.24
CD44-218ENST00000525469 PTCH1Q13635 1447 aa7.27□□□□□ -1.24
CD44-218ENST00000525469 MARF1Q9Y4F3 1742 aaKnown RBP7.27□□□□□ -1.25
CD44-218ENST00000525469 THAP11Q96EK4 314 aa7.27□□□□□ -1.25
CD44-218ENST00000525469 AMOTL2Q9Y2J4 779 aa7.27□□□□□ -1.25
CD44-218ENST00000525469 PIK3R4Q99570 1358 aa7.27□□□□□ -1.25
CD44-218ENST00000525469 RIMS2Q9UQ26 1411 aa7.27□□□□□ -1.25
CD44-218ENST00000525469 GCC2Q8IWJ2 1684 aa7.26□□□□□ -1.25
CD44-218ENST00000525469 UNC13BO14795 1591 aa7.26□□□□□ -1.25
CD44-218ENST00000525469 BRICD5Q6PL45 260 aa7.26□□□□□ -1.25
CD44-218ENST00000525469 PARP9Q8IXQ6 854 aa7.26□□□□□ -1.25
CD44-218ENST00000525469 ANP32EQ9BTT0 268 aa7.26□□□□□ -1.25
CD44-218ENST00000525469 MST1RQ04912 1400 aa7.26□□□□□ -1.25
CD44-218ENST00000525469 SPHKAPQ2M3C7 1700 aa7.25□□□□□ -1.25
CD44-218ENST00000525469 SLC19A1P41440 591 aa7.25□□□□□ -1.25
CD44-218ENST00000525469 PDE4DQ08499 809 aa7.25□□□□□ -1.25
CD44-218ENST00000525469 USB1Q9BQ65 265 aaKnown RBP7.25□□□□□ -1.25
CD44-218ENST00000525469 BEGAINQ9BUH8 593 aa7.25□□□□□ -1.25
CD44-218ENST00000525469 SLC24A3Q9HC58 644 aa7.25□□□□□ -1.25
CD44-218ENST00000525469 TRPM2O94759 1503 aa7.25□□□□□ -1.25
CD44-218ENST00000525469 KIF15Q9NS87 1388 aa7.24□□□□□ -1.25
CD44-218ENST00000525469 R3HDM1Q15032 1099 aaKnown RBP7.24□□□□□ -1.25
CD44-218ENST00000525469 REPIN1Q9BWE0 567 aaKnown RBP7.24□□□□□ -1.25
CD44-218ENST00000525469 RRP7BPQ9NSQ0 103 aa7.24□□□□□ -1.25
CD44-218ENST00000525469 PPP1R1BQ9UD71 204 aaPredicted RBP7.24□□□□□ -1.25
CD44-218ENST00000525469 GTF3C3Q9Y5Q9 886 aa7.24□□□□□ -1.25
CD44-218ENST00000525469 ZFYVE9O95405 1425 aa7.24□□□□□ -1.25
CD44-218ENST00000525469 ERBINQ96RT1 1412 aa7.24□□□□□ -1.25
CD44-218ENST00000525469 RPRD2Q5VT52 1461 aaKnown RBP7.24□□□□□ -1.25
CD44-218ENST00000525469 ZBTB24O43167 697 aaPredicted RBP7.23□□□□□ -1.25
CD44-218ENST00000525469 FDX1P10109 184 aa7.23□□□□□ -1.25
CD44-218ENST00000525469 RNF19BQ6ZMZ0 732 aa7.23□□□□□ -1.25
CD44-218ENST00000525469 KRT27Q7Z3Y8 459 aa7.23□□□□□ -1.25
CD44-218ENST00000525469 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.23□□□□□ -1.25
CD44-218ENST00000525469 BCL9LQ86UU0 1499 aa7.23□□□□□ -1.25
CD44-218ENST00000525469 NOS1P29475 1434 aa7.22□□□□□ -1.25
CD44-218ENST00000525469 GJA5P36382 358 aa7.22□□□□□ -1.25
CD44-218ENST00000525469 RETREG3Q86VR2 466 aa7.22□□□□□ -1.25
CD44-218ENST00000525469 UNC5CLQ8IV45 518 aa7.22□□□□□ -1.25
CD44-218ENST00000525469 SEPT12Q8IYM1 358 aa7.22□□□□□ -1.25
CD44-218ENST00000525469 SPIRE2Q8WWL2 714 aa7.22□□□□□ -1.25
CD44-218ENST00000525469 FCF1Q9Y324 198 aaKnown RBP7.22□□□□□ -1.25
CD44-218ENST00000525469 CCDC9Q9Y3X0 531 aaKnown RBP7.22□□□□□ -1.25
CD44-218ENST00000525469 CHD4Q14839 1912 aa7.21□□□□□ -1.25
CD44-218ENST00000525469 ADAMTS13Q76LX8 1427 aa7.21□□□□□ -1.25
CD44-218ENST00000525469 TMEM131LA2VDJ0 1609 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 COL22A1Q8NFW1 1626 aaPredicted RBP7.21□□□□□ -1.26
CD44-218ENST00000525469 SPDYE5A6NIY4 337 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 C6orf229H3BNL8 230 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 PPEF1O14829 653 aaPredicted RBP7.21□□□□□ -1.26
CD44-218ENST00000525469 RPIAP49247 311 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 HOMEZQ8IX15 550 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 FAM160A2Q8N612 972 aaPredicted RBP7.21□□□□□ -1.26
CD44-218ENST00000525469 RALGAPBQ86X10 1494 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 SOS2Q07890 1332 aaPredicted RBP7.21□□□□□ -1.26
CD44-218ENST00000525469 LMTK2Q8IWU2 1503 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 RGPD1P0DJD0 1748 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 NALCNQ8IZF0 1738 aa7.21□□□□□ -1.26
CD44-218ENST00000525469 MYOM3Q5VTT5 1437 aa7.2□□□□□ -1.26
CD44-218ENST00000525469 NRG2O14511 850 aaPredicted RBP7.2□□□□□ -1.26
CD44-218ENST00000525469 CD2BP2O95400 341 aaKnown RBP7.2□□□□□ -1.26
CD44-218ENST00000525469 MMP16P51512 607 aa7.2□□□□□ -1.26
CD44-218ENST00000525469 SPRYD7Q5W111 196 aa7.2□□□□□ -1.26
CD44-218ENST00000525469 ZNF598Q86UK7 904 aaKnown RBP7.2□□□□□ -1.26
CD44-218ENST00000525469 GLI3P10071 1580 aa7.2□□□□□ -1.26
CD44-218ENST00000525469 LAMC1P11047 1609 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 PTPRUQ92729 1446 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 ADGRL3Q9HAR2 1447 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 C1orf167Q5SNV9 1468 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 GFRA3O60609 400 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 DXOO77932 396 aaKnown RBP7.19□□□□□ -1.26
CD44-218ENST00000525469 C1QTNF8P60827 252 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 ZNF697Q5TEC3 545 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 TBC1D2Q9BYX2 928 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 RSPH6AQ9H0K4 717 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 PRDM9Q9NQV7 894 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 PDZRN3Q9UPQ7 1066 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 CROCC2H7BZ55 1655 aa7.19□□□□□ -1.26
CD44-218ENST00000525469 XRN1Q8IZH2 1706 aaKnown RBP7.18□□□□□ -1.26
CD44-218ENST00000525469 MS4A1P11836 297 aa7.18□□□□□ -1.26
CD44-218ENST00000525469 JUNDP17535 347 aa7.18□□□□□ -1.26
CD44-218ENST00000525469 GUCA2AQ02747 115 aa7.18□□□□□ -1.26
CD44-218ENST00000525469 MTMR2Q13614 643 aa7.18□□□□□ -1.26
CD44-218ENST00000525469 Q6ZNB5 142 aa7.18□□□□□ -1.26
CD44-218ENST00000525469 ZNF784Q8NCA9 323 aaPredicted RBP7.18□□□□□ -1.26
CD44-218ENST00000525469 HLA-CQ95604 372 aa7.18□□□□□ -1.26
CD44-218ENST00000525469 ORAI2Q96SN7 254 aa7.18□□□□□ -1.26
CD44-218ENST00000525469 NPHP3Q7Z494 1330 aa7.18□□□□□ -1.26
CD44-218ENST00000525469 MYOM2P54296 1465 aa7.17□□□□□ -1.26
CD44-218ENST00000525469 MOXD2PA6NHM9 499 aa7.17□□□□□ -1.26
CD44-218ENST00000525469 PRR20EP86478 221 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms