RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 HOXC9P31274 260 aa13.62□□□□□ -0.23
HDAC9-228ENST00000524023 GAS2L3Q86XJ1 694 aa13.62□□□□□ -0.23
HDAC9-228ENST00000524023 TUBGCP6Q96RT7 1819 aa13.62□□□□□ -0.23
HDAC9-228ENST00000524023 NWD1Q149M9 1564 aa13.61□□□□□ -0.23
HDAC9-228ENST00000524023 ST18O60284 1047 aa13.61□□□□□ -0.23
HDAC9-228ENST00000524023 GNAI3P08754 354 aa13.61□□□□□ -0.23
HDAC9-228ENST00000524023 NUCB2P80303 420 aa13.61□□□□□ -0.23
HDAC9-228ENST00000524023 FKBP5Q13451 457 aaPredicted RBP13.61□□□□□ -0.23
HDAC9-228ENST00000524023 EXOC6BQ9Y2D4 811 aa13.61□□□□□ -0.23
HDAC9-228ENST00000524023 SALL3Q9BXA9 1300 aa13.61□□□□□ -0.23
HDAC9-228ENST00000524023 CYP2E1P05181 493 aaPredicted RBP13.61□□□□□ -0.23
HDAC9-228ENST00000524023 ANKARQ7Z5J8 1434 aa13.61□□□□□ -0.23
HDAC9-228ENST00000524023 N4BP2Q86UW6 1770 aaPredicted RBP13.61□□□□□ -0.23
HDAC9-228ENST00000524023 USP54Q70EL1 1684 aa13.6□□□□□ -0.23
HDAC9-228ENST00000524023 SOS1Q07889 1333 aaPredicted RBP13.6□□□□□ -0.23
HDAC9-228ENST00000524023 MAP3K5Q99683 1374 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 ATP8B2P98198 1209 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 KLHL40Q2TBA0 621 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 IL17REQ8NFR9 667 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 LRRCC1Q9C099 1032 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 CWC22Q9HCG8 908 aaKnown RBP13.59□□□□□ -0.23
HDAC9-228ENST00000524023 PNMA6EA0A0J9YXQ4 647 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 NUTM2GQ5VZR2 741 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 THEMISQ8N1K5 641 aaPredicted RBP13.59□□□□□ -0.23
HDAC9-228ENST00000524023 NECTIN2Q92692 538 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 BABAM1Q9NWV8 329 aa13.59□□□□□ -0.23
HDAC9-228ENST00000524023 TAF7Q15545 349 aaPredicted RBP13.58□□□□□ -0.24
HDAC9-228ENST00000524023 TSHZ3Q63HK5 1081 aa13.58□□□□□ -0.24
HDAC9-228ENST00000524023 PLPPR3Q6T4P5 718 aa13.58□□□□□ -0.24
HDAC9-228ENST00000524023 DDX49Q9Y6V7 483 aaKnown RBP13.58□□□□□ -0.24
HDAC9-228ENST00000524023 IBTKQ9P2D0 1353 aaPredicted RBP13.57□□□□□ -0.24
HDAC9-228ENST00000524023 MX1P20591 662 aa13.57□□□□□ -0.24
HDAC9-228ENST00000524023 PKP1Q13835 747 aa13.57□□□□□ -0.24
HDAC9-228ENST00000524023 ZGPATQ8N5A5 531 aaKnown RBP13.57□□□□□ -0.24
HDAC9-228ENST00000524023 PXDNLA1KZ92 1463 aa13.57□□□□□ -0.24
HDAC9-228ENST00000524023 MCTP1Q6DN14 999 aa13.56□□□□□ -0.24
HDAC9-228ENST00000524023 ABTB2Q8N961 1025 aa13.56□□□□□ -0.24
HDAC9-228ENST00000524023 ESYT1Q9BSJ8 1104 aa13.56□□□□□ -0.24
HDAC9-228ENST00000524023 LRRFIP2Q9Y608 721 aaKnown RBP13.56□□□□□ -0.24
HDAC9-228ENST00000524023 KCNA6P17658 529 aa13.56□□□□□ -0.24
HDAC9-228ENST00000524023 LTV1Q96GA3 475 aaPredicted RBP13.56□□□□□ -0.24
HDAC9-228ENST00000524023 FER1L4A9Z1Z3 1794 aa13.56□□□□□ -0.24
HDAC9-228ENST00000524023 CLCN1P35523 988 aa13.55□□□□□ -0.24
HDAC9-228ENST00000524023 USP44Q9H0E7 712 aa13.55□□□□□ -0.24
HDAC9-228ENST00000524023 LMBRD1Q9NUN5 540 aa13.55□□□□□ -0.24
HDAC9-228ENST00000524023 STAP2Q9UGK3 403 aa13.55□□□□□ -0.24
HDAC9-228ENST00000524023 LTN1O94822 1766 aa13.54□□□□□ -0.24
HDAC9-228ENST00000524023 CHMLP26374 656 aa13.54□□□□□ -0.24
HDAC9-228ENST00000524023 SRCIN1Q9C0H9 1055 aa13.54□□□□□ -0.24
HDAC9-228ENST00000524023 ZDHHC9Q9Y397 364 aa13.54□□□□□ -0.24
HDAC9-228ENST00000524023 UBTFL1P0CB47 393 aaPredicted RBP13.54□□□□□ -0.24
HDAC9-228ENST00000524023 NEK4P51957 841 aa13.54□□□□□ -0.24
HDAC9-228ENST00000524023 HDGFL1Q5TGJ6 251 aa13.54□□□□□ -0.24
HDAC9-228ENST00000524023 USHBP1Q8N6Y0 703 aa13.54□□□□□ -0.24
HDAC9-228ENST00000524023 TRIM6-TRIM34B2RNG4 842 aa13.53□□□□□ -0.24
HDAC9-228ENST00000524023 RILPL2Q969X0 211 aa13.53□□□□□ -0.24
HDAC9-228ENST00000524023 PHAXQ9H814 394 aaKnown RBP13.53□□□□□ -0.24
HDAC9-228ENST00000524023 CEMIPQ8WUJ3 1361 aa13.52□□□□□ -0.24
HDAC9-228ENST00000524023 MCCP23508 829 aa13.52□□□□□ -0.24
HDAC9-228ENST00000524023 SSH3Q8TE77 659 aa13.52□□□□□ -0.24
HDAC9-228ENST00000524023 AOX1Q06278 1338 aa13.52□□□□□ -0.24
HDAC9-228ENST00000524023 MCM2P49736 904 aa13.52□□□□□ -0.25
HDAC9-228ENST00000524023 ANAPC15P60006 121 aa13.52□□□□□ -0.25
HDAC9-228ENST00000524023 TMX3Q96JJ7 454 aa13.52□□□□□ -0.25
HDAC9-228ENST00000524023 PALD1Q9ULE6 856 aa13.52□□□□□ -0.25
HDAC9-228ENST00000524023 ZNF445P59923 1031 aa13.51□□□□□ -0.25
HDAC9-228ENST00000524023 C14orf37Q86TY3 774 aa13.51□□□□□ -0.25
HDAC9-228ENST00000524023 UNC5CLQ8IV45 518 aa13.51□□□□□ -0.25
HDAC9-228ENST00000524023 ANO2Q9NQ90 1003 aa13.51□□□□□ -0.25
HDAC9-228ENST00000524023 SETD1BQ9UPS6 1966 aaKnown RBP13.51□□□□□ -0.25
HDAC9-228ENST00000524023 ESPNB1AK53 854 aa13.51□□□□□ -0.25
HDAC9-228ENST00000524023 NASPP49321 788 aaPredicted RBP13.51□□□□□ -0.25
HDAC9-228ENST00000524023 CAVIN1Q6NZI2 390 aaKnown RBP13.51□□□□□ -0.25
HDAC9-228ENST00000524023 IP6K1Q92551 441 aa13.51□□□□□ -0.25
HDAC9-228ENST00000524023 TRIM44Q96DX7 344 aaPredicted RBP13.51□□□□□ -0.25
HDAC9-228ENST00000524023 MED1Q15648 1581 aaPredicted RBP13.51□□□□□ -0.25
HDAC9-228ENST00000524023 NCLP19338 710 aaKnown RBP13.5□□□□□ -0.25
HDAC9-228ENST00000524023 POLA2Q14181 598 aa13.5□□□□□ -0.25
HDAC9-228ENST00000524023 ZSCAN23Q3MJ62 389 aa13.5□□□□□ -0.25
HDAC9-228ENST00000524023 IL17RAQ96F46 866 aa13.5□□□□□ -0.25
HDAC9-228ENST00000524023 IL1RAPL2Q9NP60 686 aa13.5□□□□□ -0.25
HDAC9-228ENST00000524023 PHF8Q9UPP1 1060 aa13.5□□□□□ -0.25
HDAC9-228ENST00000524023 ERBB4Q15303 1308 aa13.5□□□□□ -0.25
HDAC9-228ENST00000524023 KDM3BQ7LBC6 1761 aa13.5□□□□□ -0.25
HDAC9-228ENST00000524023 RAB11FIP3O75154 756 aa13.49□□□□□ -0.25
HDAC9-228ENST00000524023 PRPF40AO75400 957 aaKnown RBP13.49□□□□□ -0.25
HDAC9-228ENST00000524023 EIF4A1P60842 406 aaKnown RBP13.49□□□□□ -0.25
HDAC9-228ENST00000524023 CCDC173Q0VFZ6 552 aa13.49□□□□□ -0.25
HDAC9-228ENST00000524023 CUL4AQ13619 759 aa13.49□□□□□ -0.25
HDAC9-228ENST00000524023 PPP1R42Q7Z4L9 355 aa13.49□□□□□ -0.25
HDAC9-228ENST00000524023 NFAT5O94916 1531 aa13.49□□□□□ -0.25
HDAC9-228ENST00000524023 NBPF6Q5VWK0 638 aa13.49□□□□□ -0.25
HDAC9-228ENST00000524023 NBPF4Q96M43 638 aa13.49□□□□□ -0.25
HDAC9-228ENST00000524023 PPP1R9BQ96SB3 815 aa13.49□□□□□ -0.25
HDAC9-228ENST00000524023 SURF6O75683 361 aaKnown RBP13.48□□□□□ -0.25
HDAC9-228ENST00000524023 HOXB7P09629 217 aa13.48□□□□□ -0.25
HDAC9-228ENST00000524023 EIF2S2P20042 333 aaKnown RBP13.48□□□□□ -0.25
HDAC9-228ENST00000524023 NUTM1Q86Y26 1132 aa13.48□□□□□ -0.25
HDAC9-228ENST00000524023 GPT2Q8TD30 523 aa13.48□□□□□ -0.25
HDAC9-228ENST00000524023 LGR6Q9HBX8 967 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms